42 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Caul_0012  CDS  NC_010338  20020  21054  1035  tryptophanyl-tRNA synthetase  YP_001681648  decreased coverage  0.00178071  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_0138  CDS  NC_010338  151893  152516  624  hypothetical protein  YP_001681774  decreased coverage  0.00943945  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_0324  CDS  NC_010338  369308  371281  1974  N-6 DNA methylase  YP_001681959  decreased coverage  0.00528654  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1022  CDS  NC_010338  1082494  1082913  420  FliJ protein  YP_001682650  decreased coverage  0.00652021  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1266  CDS  NC_010338  1326288  1326599  312  hypothetical protein  YP_001682894  decreased coverage  0.00853794  normal  0.0139586  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1269  CDS  NC_010338  1328096  1329052  957  HxlR family transcriptional regulator  YP_001682897  normal  0.178567  decreased coverage  0.00270462  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1282  CDS  NC_010338  1347156  1348214  1059  aldo/keto reductase  YP_001682910  normal  decreased coverage  0.0039468  Caulobacter sp. K31  Bacteria 
 
 
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Caul_1787  CDS  NC_010338  1889144  1889683  540  protein tyrosine phosphatase  YP_001683414  normal  decreased coverage  0.00981569  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_1843  CDS  NC_010338  1960245  1963496  3252  TonB-dependent receptor  YP_001683470  unclonable  1.98025e-08  decreased coverage  0.000327731  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2043  CDS  NC_010338  2184131  2185108  978  tRNA-dihydrouridine synthase A  YP_001683669  decreased coverage  0.00353768  normal  0.913937  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2045  CDS  NC_010338  2185890  2186249  360  hypothetical protein  YP_001683671  decreased coverage  0.00159761  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_2092  CDS  NC_010338  2240584  2241003  420  putative general secretion pathway protein H  YP_001683718  decreased coverage  0.00990757  normal  0.860283  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_2142  CDS  NC_010338  2317924  2321028  3105  TonB-dependent receptor  YP_001683768  decreased coverage  1.42845e-05  normal  0.0159239  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2181  CDS  NC_010338  2371174  2371515  342  excinuclease ABC subunit C  YP_001683807  decreased coverage  0.00892068  normal  0.804262  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2409  CDS  NC_010338  2628457  2629491  1035  hypothetical protein  YP_001684034  decreased coverage  1.10953e-09  normal  0.355489  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2410  CDS  NC_010338  2629526  2631601  2076  Alpha-N-arabinofuranosidase  YP_001684035  decreased coverage  1.06036e-09  normal  0.27509  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2636  CDS  NC_010338  2858025  2858903  879  transglutaminase domain-containing protein  YP_001684261  decreased coverage  0.000217317  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2664  CDS  NC_010338  2897278  2897901  624  cysteine dioxygenase type I  YP_001684289  decreased coverage  0.000978077  normal  0.382452  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2735  CDS  NC_010338  2970604  2972529  1926  TonB-dependent receptor  YP_001684360  decreased coverage  0.00964506  normal  0.0993289  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2799  CDS  NC_010338  3039445  3040650  1206  1-deoxy-D-xylulose 5-phosphate reductoisomerase  YP_001684424  decreased coverage  0.00337328  normal  0.315561  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2839  CDS  NC_010338  3078070  3079302  1233  glycosyl transferase group 1  YP_001684464  decreased coverage  0.000929043  normal  0.0434623  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2895  CDS  NC_010338  3143093  3143950  858  hypothetical protein  YP_001684520  normal  0.068236  decreased coverage  0.0048069  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2896  CDS  NC_010338  3144096  3144467  372  hypothetical protein  YP_001684521  normal  0.039157  decreased coverage  0.00427012  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2897  CDS  NC_010338  3144495  3145307  813  UspA domain-containing protein  YP_001684522  normal  0.185015  decreased coverage  0.00487068  Caulobacter sp. K31  Bacteria 
 
 
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Caul_2940  CDS  NC_010338  3189411  3189722  312  phosphopantetheine-binding  YP_001684565  decreased coverage  0.00116995  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_3404  CDS  NC_010338  3677702  3678697  996  D-alanine--D-alanine ligase  YP_001685029  normal  0.115962  decreased coverage  0.00803245  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3669  CDS  NC_010338  3963749  3965158  1410  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_001685294  decreased coverage  0.00445508  normal  0.10958  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3797  CDS  NC_010338  4113202  4113567  366  hypothetical protein  YP_001685421  decreased coverage  3.71687e-07  hitchhiker  2.03227e-05  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3833  CDS  NC_010338  4152296  4153660  1365  conjugal transfer protein TrbL  YP_001685457  decreased coverage  0.00915506  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_3851  CDS  NC_010338  4166515  4167165  651  protocatechuate 3,4-dioxygenase, alpha subunit  YP_001685475  decreased coverage  0.00660482  normal  0.519144  Caulobacter sp. K31  Bacteria 
 
 
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Caul_4111  CDS  NC_010338  4467778  4468110  333  glutathione-dependent formaldehyde-activating GFA  YP_001685733  decreased coverage  0.000937447  normal  0.58926  Caulobacter sp. K31  Bacteria 
 
 
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Caul_4150  CDS  NC_010338  4501482  4503128  1647  chaperonin GroEL  YP_001685772  decreased coverage  0.00153421  normal  0.471865  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4663  CDS  NC_010338  5041201  5042373  1173  ABC-2 type transporter  YP_001686281  decreased coverage  0.000515456  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4732  CDS  NC_010338  5119652  5119975  324  small multidrug resistance protein  YP_001686350  normal  decreased coverage  0.00175948  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4733  CDS  NC_010338  5120157  5120897  741  hypothetical protein  YP_001686351  normal  decreased coverage  0.00188932  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4737  CDS  NC_010338  5122858  5124486  1629  F0F1 ATP synthase subunit beta  YP_001686355  normal  0.603739  decreased coverage  0.00210198  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4738  CDS  NC_010338  5124544  5125428  885  F0F1 ATP synthase subunit gamma  YP_001686356  normal  0.439609  decreased coverage  0.00190337  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_4809  CDS  NC_010338  5203721  5204830  1110  hypothetical protein  YP_001686427  decreased coverage  0.00137373  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_5019  CDS  NC_010338  5421889  5423310  1422  transcription termination factor Rho  YP_001686637  decreased coverage  0.000339489  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_5020  CDS  NC_010338  5423458  5424423  966  alcohol dehydrogenase  YP_001686638  decreased coverage  0.00109136  normal  Caulobacter sp. K31  Bacteria 
 
 
-
 
Caul_5021  CDS  NC_010338  5424430  5425137  708  carboxymethylenebutenolidase  YP_001686639  decreased coverage  0.0018188  normal  Caulobacter sp. K31  Bacteria 
 
 
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Caul_5081  CDS  NC_010335  1415  2725  1311  peptidase S10 serine carboxypeptidase  YP_001676515  decreased coverage  3.72495e-09  normal  0.0461552  Caulobacter sp. K31  Bacteria 
 
 
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