50 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Smed_0045  CDS  NC_009636  47291  47710  +  420  XRE family transcriptional regulator  YP_001325740  decreased coverage  0.00000742068  hitchhiker  0.0000000000614145  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0101  CDS  NC_009636  111629  112858  -  1230  ROK family protein  YP_001325796  decreased coverage  0.00205324  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0248  CDS  NC_009636  271834  272481  -  648  flagellar motor switch protein FliN  YP_001325942  decreased coverage  0.00193923  normal  0.661473  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0251  CDS  NC_009636  274499  275278  +  780  hypothetical protein  YP_001325945  decreased coverage  0.00748902  normal  0.467575  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0353  CDS  NC_009636  378111  378878  -  768  protein of unknown function DUF899 thioredoxin family protein  YP_001326046  decreased coverage  0.00646248  normal  0.96044  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0393  CDS  NC_009636  421682  422578  -  897  LysR family transcriptional regulator  YP_001326085  decreased coverage  0.00156411  normal  0.514567  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0489  CDS  NC_009636  531702  533798  +  2097  methyl-accepting chemotaxis sensory transducer  YP_001326181  decreased coverage  0.000832175  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0628  CDS  NC_009636  674274  674609  -  336  hypothetical protein  YP_001326319  decreased coverage  0.00633801  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_0734  CDS  NC_009636  788168  789667  -  1500  replicative DNA helicase  YP_001326425  decreased coverage  0.00267216  normal  0.96044  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1003  CDS  NC_009636  1076377  1076946  +  570  30S ribosomal protein S5  YP_001326691  normal  0.0840798  decreased coverage  0.00550147  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1004  CDS  NC_009636  1076959  1077162  +  204  50S ribosomal protein L30  YP_001326692  normal  0.0620766  decreased coverage  0.00478074  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1015  CDS  NC_009636  1086000  1087310  +  1311  recombination factor protein RarA  YP_001326703  decreased coverage  0.00103733  normal  0.467953  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1028  CDS  NC_009636  1098221  1099537  +  1317  hypothetical protein  YP_001326716  decreased coverage  0.0000562968  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1201  CDS  NC_009636  1281258  1281884  +  627  hypothetical protein  YP_001326886  decreased coverage  0.0000232324  normal  0.882525  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1264  CDS  NC_009636  1358823  1359368  +  546  phosphopantetheine adenylyltransferase  YP_001326949  decreased coverage  0.00933319  normal  0.787413  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1325  CDS  NC_009636  1415302  1415718  -  417  gene transfer agent  YP_001327010  decreased coverage  0.00376041  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1437  CDS  NC_009636  1517409  1518161  -  753  short-chain dehydrogenase/reductase SDR  YP_001327118  normal  0.46093  decreased coverage  0.00000100027  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1438  CDS  NC_009636  1518158  1519807  -  1650  acyl-CoA synthetase  YP_001327119  normal  0.603543  decreased coverage  0.00000173613  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1439  CDS  NC_009636  1519804  1520973  -  1170  acetyl-CoA acetyltransferase  YP_001327120  normal  0.557152  decreased coverage  0.000000285125  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1443  CDS  NC_009636  1523785  1525653  -  1869  TRAP C4-dicarboxylate transport system permease DctM subunit  YP_001327124  decreased coverage  0.000367169  hitchhiker  0.000267752  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1444  CDS  NC_009636  1526132  1526383  +  252  hypothetical protein  YP_001327125  decreased coverage  0.0000367868  hitchhiker  0.00032465  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1452  CDS  NC_009636  1532678  1534480  -  1803  single-stranded-DNA-specific exonuclease RecJ  YP_001327132  decreased coverage  0.00256801  hitchhiker  0.00132955  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1575  CDS  NC_009636  1672262  1674157  -  1896  hypothetical protein  YP_001327251  decreased coverage  0.00305451  normal  0.645388  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1614  CDS  NC_009636  1709504  1709893  +  390  thioesterase superfamily protein  YP_001327290  decreased coverage  0.00678446  normal  0.171125  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1728  CDS  NC_009636  1808944  1810179  -  1236  extracellular solute-binding protein  YP_001327398  decreased coverage  0.00458236  normal  0.504509  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1795  CDS  NC_009636  1877988  1878812  -  825  response regulator receiver protein  YP_001327465  decreased coverage  0.00918371  hitchhiker  0.000651153  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1799  CDS  NC_009636  1882263  1882901  +  639  integral membrane protein TerC  YP_001327469  normal  0.916732  decreased coverage  0.000172581  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1863  CDS  NC_009636  1936118  1936855  +  738  necrosis-inducing protein  YP_001327532  decreased coverage  0.00488772  normal  0.370608  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_1925  CDS  NC_009636  1980412  1981419  +  1008  phage recombination protein Bet  YP_001327594  decreased coverage  0.00134749  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2041  CDS  NC_009636  2093525  2094469  +  945  ABC transporter binding protein  YP_001327709  decreased coverage  0.00512093  normal  0.331849  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2084  CDS  NC_009636  2141181  2142572  -  1392  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_001327752  normal  0.0517095  decreased coverage  0.000454332  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2085  CDS  NC_009636  2142578  2143678  -  1101  phospho-N-acetylmuramoyl-pentapeptide- transferase  YP_001327753  normal  0.0499582  decreased coverage  0.000454332  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2170  CDS  NC_009636  2240929  2241747  +  819  binding-protein-dependent transport systems inner membrane component  YP_001327838  decreased coverage  0.00609739  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2179  CDS  NC_009636  2252422  2253531  +  1110  binding-protein-dependent transport systems inner membrane component  YP_001327847  decreased coverage  0.00925001  normal  0.561279  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2192  CDS  NC_009636  2268614  2270788  +  2175  ferrioxamine B receptor precursor protein  YP_001327860  normal  0.411084  decreased coverage  0.00773577  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2193  CDS  NC_009636  2270794  2271549  +  756  ferric iron reductase  YP_001327861  normal  0.544293  decreased coverage  0.00470622  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2343  CDS  NC_009636  2419789  2420220  +  432  hypothetical protein  YP_001328010  decreased coverage  0.00267953  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2352  CDS  NC_009636  2427810  2428478  -  669  HAD family hydrolase  YP_001328019  decreased coverage  0.00492029  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2395  CDS  NC_009636  2470532  2471419  -  888  ABC transporter related  YP_001328062  normal  1  decreased coverage  0.00705338  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2396  CDS  NC_009636  2471419  2472804  -  1386  inner-membrane translocator  YP_001328063  normal  1  decreased coverage  0.00825655  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2397  CDS  NC_009636  2472809  2473711  -  903  inner-membrane translocator  YP_001328064  normal  1  decreased coverage  0.00620383  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2507  CDS  NC_009636  2605432  2605860  -  429  hypothetical protein  YP_001328172  decreased coverage  0.00622099  normal  0.253692  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2836  CDS  NC_009636  2960806  2961918  +  1113  4-hydroxyphenylpyruvate dioxygenase  YP_001328501  decreased coverage  0.0000134458  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_2837  CDS  NC_009636  2961997  2962785  -  789  response regulator receiver protein  YP_001328502  decreased coverage  0.00000311945  normal  0.812847  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_3112  CDS  NC_009636  3259740  3260309  -  570  CarD family transcriptional regulator  YP_001328773  decreased coverage  0.0000522164  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_3481  CDS  NC_009636  3688834  3689454  -  621  transglutaminase family protein cysteine peptidase BTLCP  YP_001329134  decreased coverage  0.00539194  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_3572  CDS  NC_009636  3779120  3779896  -  777  ubiquinone/menaquinone biosynthesis methyltransferase  YP_001329222  normal  1  decreased coverage  0.0000345623  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_3573  CDS  NC_009636  3780080  3781000  +  921  formamidopyrimidine-DNA glycosylase  YP_001329223  normal  1  decreased coverage  0.0000376379  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_3574  CDS  NC_009636  3781073  3781846  +  774  enoyl-CoA hydratase  YP_001329224  normal  1  decreased coverage  0.0000415637  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
Smed_R0032  tRNA  NC_009636  1532539  1532614  +  76  tRNA-Glu    decreased coverage  0.00151707  hitchhiker  0.000680514  Sinorhizobium medicae WSM419  Bacteria 
 
 
-
 
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