13 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Smed_5113  CDS  NC_009621  62783  65998  3216  diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)  YP_001313823  normal  decreased coverage  0.00592248  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5114  CDS  NC_009621  66185  66877  693  two component LuxR family transcriptional regulator  YP_001313824  normal  decreased coverage  0.00554548  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5456  CDS  NC_009621  422750  423856  1107  alanine racemase  YP_001314150  decreased coverage  0.000537083  normal  0.747323  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5711  CDS  NC_009621  684593  684901  309  hypothetical protein  YP_001314367  decreased coverage  0.00260452  normal  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5793  CDS  NC_009621  764776  765744  969  binding-protein-dependent transport systems inner membrane component  YP_001314430  hitchhiker  0.000255832  decreased coverage  0.000142665  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5794  CDS  NC_009621  765805  767367  1563  extracellular solute-binding protein  YP_001314431  decreased coverage  0.000436692  decreased coverage  0.000177852  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5795    NC_009621  767635  769120  1486      decreased coverage  0.000250107  decreased coverage  0.000209549  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6005  CDS  NC_009621  961354  962661  1308  glutamine synthetase catalytic region  YP_001314611  normal  0.0483742  decreased coverage  0.00440887  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6007  CDS  NC_009621  964091  964777  687  glutamate synthase alpha subunit  YP_001314613  normal  0.607641  decreased coverage  0.00322278  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6008  CDS  NC_009621  964811  965716  906  glutamine amidotransferase class-II  YP_001314614  normal  0.362161  decreased coverage  0.00354269  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6038    NC_009621  987596  987778  183      decreased coverage  0.00867154  normal  0.479159  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6039    NC_009621  987780  987914  135      decreased coverage  0.00791241  normal  0.468441  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_6159  CDS  NC_009621  1083205  1085574  2370  type IV secretion system protein VirB4  YP_001314718  decreased coverage  0.0089682  normal  Sinorhizobium medicae WSM419  Bacteria 
 
 
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