27 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Smed_3676  CDS  NC_009620  115816  116439  +  624  TetR family transcriptional regulator  YP_001312422  normal  0.508637  decreased coverage  0.00105541  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_3710  CDS  NC_009620  151577  152872  -  1296  extracellular solute-binding protein  YP_001312456  decreased coverage  0.00279907  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_3755  CDS  NC_009620  200255  201055  +  801  inositol-phosphate phosphatase  YP_001312501  decreased coverage  0.00081783  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_3888  CDS  NC_009620  345706  346827  +  1122  NAD-dependent epimerase/dehydratase  YP_001312633  decreased coverage  0.00197458  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_3906  CDS  NC_009620  359037  359438  +  402  cupin 2 domain-containing protein  YP_001312649  decreased coverage  0.000227782  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_3963  CDS  NC_009620  411388  413238  -  1851  binding-protein-dependent transport systems inner membrane component  YP_001312705  decreased coverage  0.0013556  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4196  CDS  NC_009620  677611  678135  -  525  hypothetical protein  YP_001312934  decreased coverage  0.00164803  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4197  CDS  NC_009620  678214  678885  -  672  RNA polymerase sigma factor  YP_001312935  decreased coverage  0.00284291  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4334  CDS  NC_009620  832116  834053  +  1938  asparagine synthase (glutamine-hydrolyzing)  YP_001313072  normal  0.969348  decreased coverage  0.00494377  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4350  CDS  NC_009620  847106  847948  -  843  HemK family modification methylase  YP_001313088  decreased coverage  0.00937671  normal  0.450648  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4469  CDS  NC_009620  950746  951738  -  993  oxidoreductase domain-containing protein  YP_001313202  decreased coverage  0.00179754  normal  1  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4666  CDS  NC_009620  1177390  1178352  -  963  phosphonate ABC transporter, inner membrane subunit  YP_001313396  normal  1  decreased coverage  0.00096025  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4667  CDS  NC_009620  1178508  1179413  -  906  phosphonate ABC transporter, periplasmic phosphonate-binding protein  YP_001313397  normal  0.263075  decreased coverage  0.00095425  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4668  CDS  NC_009620  1179501  1180403  -  903  phosphonate ABC transporter, ATPase subunit  YP_001313398  normal  0.621423  decreased coverage  0.000827837  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4671  CDS  NC_009620  1182856  1184043  +  1188  acyl-CoA dehydrogenase domain-containing protein  YP_001313401  decreased coverage  0.0018836  normal  0.0173504  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4740  CDS  NC_009620  1262311  1263294  -  984  periplasmic binding protein/LacI transcriptional regulator  YP_001313470  normal  1  decreased coverage  0.00130889  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4741  CDS  NC_009620  1263518  1264570  +  1053  periplasmic binding protein/LacI transcriptional regulator  YP_001313471  normal  1  decreased coverage  0.00115423  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4742  CDS  NC_009620  1264619  1264954  -  336  cupin 2 domain-containing protein  YP_001313472  normal  1  decreased coverage  0.000930389  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4743  CDS  NC_009620  1264964  1265728  -  765  2-deoxy-D-gluconate 3-dehydrogenase  YP_001313473  normal  1  decreased coverage  0.00112688  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4744  CDS  NC_009620  1265725  1266570  -  846  5-keto-4-deoxyuronate isomerase  YP_001313474  normal  1  decreased coverage  0.00116126  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4745  CDS  NC_009620  1266688  1267437  -  750  GntR domain-containing protein  YP_001313475  normal  1  decreased coverage  0.00100625  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4746  CDS  NC_009620  1267446  1268729  -  1284  TRAP dicarboxylate transporter, DctM subunit  YP_001313476  normal  1  decreased coverage  0.001349  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4748  CDS  NC_009620  1269479  1270456  -  978  TRAP dicarboxylate transporter, DctP subunit  YP_001313478  decreased coverage  0.00048921  hitchhiker  0.00325994  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4873  CDS  NC_009620  1377033  1378706  +  1674  Na+cotransporter  YP_001313590  decreased coverage  0.00339774  normal  0.833034  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_4936  CDS  NC_009620  1446421  1448241  +  1821  ABC transporter  YP_001313651  decreased coverage  0.00595955  normal  0.404726  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5002  CDS  NC_009620  1518056  1520416  +  2361  TPR repeat-containing protein  YP_001313716  normal  1  decreased coverage  0.000902541  Sinorhizobium medicae WSM419  Bacteria 
 
 
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Smed_5003  CDS  NC_009620  1520763  1521545  -  783  ABC-2 type transporter  YP_001313717  normal  0.501886  decreased coverage  0.000172705  Sinorhizobium medicae WSM419  Bacteria 
 
 
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