39 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
CHAB381_0084  CDS  NC_009714  78324  78899  576  50S ribosomal protein L3  YP_001405697  decreased coverage  3.54525e-07  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0150  CDS  NC_009714  130587  131837  1251  Cpp17  YP_001405759  decreased coverage  8.47879e-05  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0151  CDS  NC_009714  131888  132112  225  hypothetical protein  YP_001405760  decreased coverage  5.51611e-06  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0154  CDS  NC_009714  133422  134429  1008  hypothetical protein  YP_001405763  decreased coverage  6.84092e-06  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0164  CDS  NC_009714  144392  146542  2151  DNA topoisomerase 3 (DNA topoisomerase III)  YP_001405772  decreased coverage  0.000863773  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0166  CDS  NC_009714  147910  148710  801  hypothetical protein  YP_001405774  decreased coverage  0.00531212  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0361  CDS  NC_009714  326302  326859  558  ribosome recycling factor  YP_001405963  decreased coverage  0.000245194  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0365  CDS  NC_009714  328790  329434  645  superoxide dismutase (Fe)  YP_001405967  decreased coverage  0.00134609  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0564  CDS  NC_009714  512736  515900  3165  AcrB protein  YP_001406152  decreased coverage  0.00145035  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0566  CDS  NC_009714  517084  517707  624  transcription regulator protein  YP_001406154  decreased coverage  4.11686e-07  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0567  CDS  NC_009714  517932  518195  264  co-chaperonin GroES  YP_001406155  decreased coverage  7.22404e-07  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0688  CDS  NC_009714  633409  633801  393  F0F1 ATP synthase subunit epsilon  YP_001406269  decreased coverage  0.00189916  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0689  CDS  NC_009714  633802  634380  579  ExbBTolQ family transport protein  YP_001406270  decreased coverage  0.00337  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0690  CDS  NC_009714  634380  634778  399  ExbDTolR family transport protein  YP_001406271  decreased coverage  0.00894494  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0691  CDS  NC_009714  634783  635649  867  putative periplasmic protein  YP_001406272  decreased coverage  0.00126831  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0692  CDS  NC_009714  635659  636912  1254  translocation protein TolB  YP_001406273  decreased coverage  0.00862547  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0753  CDS  NC_009714  698229  698417  189  hypothetical protein  YP_001406330  decreased coverage  0.00733423  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0774  CDS  NC_009714  715520  717202  1683  putative membrane-associated, metal-dependent hydrolase  YP_001406348  decreased coverage  0.000171309  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0788    NC_009714  729649  731463  1815      decreased coverage  0.00380184  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0794  CDS  NC_009714  735450  740000  4551  outer membrane protein  YP_001406365  decreased coverage  0.00112166  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0820  CDS  NC_009714  757422  758885  1464  putative peptidyl-prolyl cis-trans isomerase D-like protein  YP_001406386  decreased coverage  3.13553e-07  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0842  CDS  NC_009714  780356  781324  969  peptidyl-arginine deiminase family protein  YP_001406406  decreased coverage  0.00603168  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0844  CDS  NC_009714  782079  783353  1275  putative periplasmic protein  YP_001406408  decreased coverage  0.00267284  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0845  CDS  NC_009714  783347  784015  669  phosphoribosylformylglycinamidine synthase I  YP_001406409  decreased coverage  0.000370382  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0847  CDS  NC_009714  784259  784978  720  phosphoribosylaminoimidazole-succinocarboxamide synthase  YP_001406411  decreased coverage  0.00258122  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_0892  CDS  NC_009714  830962  831291  330  hypothetical protein  YP_001406454  decreased coverage  0.0096763  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1056  CDS  NC_009714  992807  994432  1626  type II and III secretion system protein  YP_001406614  decreased coverage  0.0036675  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1057  CDS  NC_009714  994410  994820  411  transformation system protein  YP_001406615  decreased coverage  0.000350779  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1060  CDS  NC_009714  997063  997932  870  GTP-binding protein Era  YP_001406618  decreased coverage  0.00411947  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1122  CDS  NC_009714  1057332  1058666  1335  sodium- and chloride-dependent transporter  YP_001406678  decreased coverage  9.4571e-06  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1344  CDS  NC_009714  1273200  1274495  1296  transcription termination factor Rho  YP_001406893  decreased coverage  2.88127e-05  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1345  CDS  NC_009714  1274621  1275400  780  CjaC  YP_001406894  decreased coverage  0.000213382  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1443    NC_009714  1387375  1388055  681      decreased coverage  0.000141206  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1475  CDS  NC_009714  1411663  1412808  1146  putative AcbV  YP_001407011  decreased coverage  1.78671e-05  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1525  CDS  NC_009714  1458365  1458793  429  hypothetical protein  YP_001407058  decreased coverage  0.000449848  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1532  CDS  NC_009714  1463306  1464580  1275  putative filamentous haemagglutinin, intein-containing protein  YP_001407065  decreased coverage  0.0092129  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1601  CDS  NC_009714  1525472  1529023  3552  pyruvate:ferredoxin (flavodoxin) oxidoreductase  YP_001407124  decreased coverage  0.00131984  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1672  CDS  NC_009714  1594183  1595382  1200  elongation factor Tu  YP_001407188  decreased coverage  9.90168e-07  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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CHAB381_1708  CDS  NC_009714  1624723  1625988  1266  major outer membrane protein  YP_001407220  decreased coverage  9.45947e-08  n/a    Campylobacter hominis ATCC BAA-381  Bacteria 
 
 
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