80 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
CCC13826_0150  CDS  NC_009802  864554  865894  1341  3-deoxy-7-phosphoheptulonate synthase  YP_001466726  decreased coverage  0.00571678  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0315  CDS  NC_009802  1923132  1924352  1221  30S ribosomal protein S15  YP_001467745  decreased coverage  0.00992142  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0323  CDS  NC_009802  1920998  1921522  525  thiol peroxidase (scavengase P20)  YP_001467743  decreased coverage  4.38204e-05  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0355  CDS  NC_009802  1047378  1047791  414  nickel responsive regulator  YP_001466894  decreased coverage  0.000375481  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0361  CDS  NC_009802  442824  443612  789  phosphomethylpyrimidine kinase  YP_001466336  decreased coverage  0.000143367  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0366  CDS  NC_009802  1371797  1372663  867  histidinol phosphatase  YP_001467215  decreased coverage  0.00129205  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0369  CDS  NC_009802  1374497  1375522  1026  DNA polymerase III gamma and tau subunits  YP_001467218  decreased coverage  0.000259471  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0370  CDS  NC_009802  1375519  1375998  480  3-dehydroquinate dehydratase  YP_001467219  decreased coverage  0.00140278  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0460  CDS  NC_009802  1466889  1469018  2130  hydroxylamine reductase (hybrid-cluster protein; HCP)  YP_001467301  decreased coverage  0.00649347  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0469  CDS  NC_009802  1476747  1477757  1011  large-conductance mechanosensitive channel  YP_001467310  decreased coverage  0.000368758  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0472  CDS  NC_009802  1479675  1480379  705  glycosyl transferase, group 2 family protein  YP_001467313  decreased coverage  0.0043058  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0617  CDS  NC_009795  24780  25769  990  phage integrase family site specific recombinase  YP_001456672  decreased coverage  7.98153e-05  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0665  CDS  NC_009802  750829  750954  126  2-dehydro-3-deoxyphosphooctonate aldolase  YP_001466612  decreased coverage  0.0042608  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0668  CDS  NC_009802  747390  747650  261  co-chaperonin GroES  YP_001466609  decreased coverage  0.000199289  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0745  CDS  NC_009802  288507  289229  723  TPR repeat-containing protein  YP_001466202  decreased coverage  0.000567772  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0746  CDS  NC_009802  287873  288514  642  putative deoxyribonucleotide triphosphate pyrophosphatase  YP_001466201  decreased coverage  0.000577745  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0821  CDS  NC_009802  362264  362890  627  two component transcriptional regulator  YP_001466262  decreased coverage  0.000794193  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0822  CDS  NC_009802  362887  364125  1239  polysulfide reductase chain C (sulfur reductase chain C)  YP_001466263  decreased coverage  0.000697352  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0823  CDS  NC_009802  365367  365972  606  hypothetical protein  YP_001466265  decreased coverage  0.000716411  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0825  CDS  NC_009802  366244  367062  819  anaerobic C4-dicarboxylate transporter DcuA  YP_001466266  decreased coverage  0.000209586  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0856  CDS  NC_009802  619409  619534  126  hypothetical protein  YP_001466502  decreased coverage  0.00253432  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0857  CDS  NC_009802  619686  619916  231  hypothetical protein  YP_001466503  decreased coverage  0.00289876  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0884  CDS  NC_009802  641705  642676  972  delta-aminolevulinic acid dehydratase  YP_001466525  decreased coverage  0.00634194  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0887  CDS  NC_009802  644070  645431  1362  coproporphyrinogen III oxidase  YP_001466528  decreased coverage  0.00571678  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0888  CDS  NC_009802  645545  647224  1680  ComEC/Rec2 family protein  YP_001466529  decreased coverage  0.00289662  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0890  CDS  NC_009802  647901  649850  1950  MadN protein  YP_001466531  decreased coverage  0.00448941  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0891  CDS  NC_009802  649854  651992  2139  hypothetical protein  YP_001466532  decreased coverage  0.00925255  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0892  CDS  NC_009802  651995  653461  1467  acriflavine resistance protein  YP_001466533  decreased coverage  0.00239109  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0916  CDS  NC_009802  449016  449903  888  F0F1 ATP synthase subunit gamma  YP_001466344  decreased coverage  0.00701907  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0917  CDS  NC_009802  449915  451312  1398  F0F1 ATP synthase subunit beta  YP_001466345  decreased coverage  0.00508196  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0966  CDS  NC_009802  394772  395443  672  His/Glu/Gln/Arg/opine amino acid ABC transporter permease  YP_001466290  decreased coverage  0.00233107  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0976  CDS  NC_009802  402287  403165  879  hypothetical protein  YP_001466299  decreased coverage  0.00690778  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0979  CDS  NC_009802  405597  406817  1221  prolipoprotein diacylglyceryl transferase  YP_001466302  decreased coverage  0.000424013  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_0980  CDS  NC_009802  406853  407524  672  response regulator receiver domain-containing protein  YP_001466303  decreased coverage  7.90444e-05  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1010  CDS  NC_009802  436368  437606  1239  hypothetical protein  YP_001466333  decreased coverage  0.00038301  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1022  CDS  NC_009802  1371439  1371783  345  hypothetical protein  YP_001467214  decreased coverage  0.000275041  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1049  CDS  NC_009802  832564  832995  432  hypothetical protein  YP_001466694  decreased coverage  0.00176579  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1066  CDS  NC_009802  819452  819826  375  cation-efflux system membrane protein  YP_001466679  decreased coverage  0.000356416  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1070    NC_009802  816806  817129  324      decreased coverage  0.00155461  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1073  CDS  NC_009802  812254  812766  513  outer-membrane lipoprotein carrier protein  YP_001466673  decreased coverage  0.00225889  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1074  CDS  NC_009802  811687  812226  540  putative periplasmic protein  YP_001466672  decreased coverage  0.00307724  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1075  CDS  NC_009802  810371  811690  1320  hypothetical protein  YP_001466671  decreased coverage  0.000929546  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1098  CDS  NC_009802  1045753  1047015  1263  hypothetical protein  YP_001466892  decreased coverage  0.00466748  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1285  CDS  NC_009802  1024799  1025812  1014  periplasmic binding protein  YP_001466871  decreased coverage  0.000393821  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1289  CDS  NC_009802  1028530  1030713  2184  TonB-dependent receptor domain-containing protein  YP_001466875  decreased coverage  0.00967025  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1306  CDS  NC_009802  1088099  1089439  1341  hypothetical protein  YP_001466921  decreased coverage  0.00236865  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1359  CDS  NC_009796  4010  4567  558  hypothetical protein  YP_001456685  decreased coverage  1.47809e-07  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1406  CDS  NC_009802  1126055  1126801  747  NAD-dependent epimerase/dehydratase family protein  YP_001466963  decreased coverage  0.000194485  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1407  CDS  NC_009802  1126810  1128021  1212  hypothetical protein  YP_001466964  decreased coverage  0.00365871  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1425  CDS  NC_009802  1146472  1147470  999  CRISPR-associated protein Cas1  YP_001466979  decreased coverage  0.00327845  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1468  CDS  NC_009802  688606  689901  1296  thiamine biosynthesis protein ThiC  YP_001466561  decreased coverage  0.000710454  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1512  CDS  NC_009802  495152  496507  1356  glycosyl transferase, group 1  YP_001466391  decreased coverage  0.00486794  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1513  CDS  NC_009802  496519  497013  495  peptidyl-prolyl cis-trans isomerase B (PPIase B; rotamase B)  YP_001466392  decreased coverage  0.00601404  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1633  CDS  NC_009802  794707  795747  1041  peptide methionine sulfoxide reductase family protein  YP_001466656  decreased coverage  0.00891353  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1635  CDS  NC_009802  796161  797351  1191  peptidase M50  YP_001466657  decreased coverage  0.000607454  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1735  CDS  NC_009802  1874596  1876506  1911  transketolase  YP_001467680  decreased coverage  0.00492424  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1736  CDS  NC_009802  1876614  1877513  900  geranyltranstransferase (farnesyl-diphosphate synthase; FPP synthase)  YP_001467681  decreased coverage  0.000234169  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1740  CDS  NC_009802  1879284  1880567  1284  UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase  YP_001467685  decreased coverage  0.000654144  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1743  CDS  NC_009802  1881498  1882418  921  nitrogenase cofactor biosynthesis protein NifB  YP_001467688  decreased coverage  0.00139756  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1745  CDS  NC_009802  1882494  1883186  693  putative ABC transporter, ATP-binding protein  YP_001467689  decreased coverage  0.00365459  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1747  CDS  NC_009802  1883929  1884540  612  hypothetical protein  YP_001467691  decreased coverage  0.00222307  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1752  CDS  NC_009802  1887939  1888565  627  30S ribosomal protein S4  YP_001467696  decreased coverage  6.8654e-05  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1763  CDS  NC_009802  1893931  1894326  396  30S ribosomal protein S8  YP_001467706  decreased coverage  0.00017341  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1877  CDS  NC_009802  2027560  2028102  543  hypothetical protein  YP_001467832  decreased coverage  0.00169743  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1878  CDS  NC_009802  2027105  2027563  459  NosL protein  YP_001467831  decreased coverage  0.00130265  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_1965  CDS  NC_009802  1348859  1349386  528  CRISPR-associated protein Cas2  YP_001467194  decreased coverage  0.00824387  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2016  CDS  NC_009802  1305483  1306574  1092  PepSY-associated TM helix family protein  YP_001467153  decreased coverage  0.00288913  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2019  CDS  NC_009802  1303217  1303756  540  hypothetical protein  YP_001467150  decreased coverage  0.00389044  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2021  CDS  NC_009802  1301460  1302599  1140  putative dihydropteroate synthase  YP_001467148  decreased coverage  0.000920733  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2022  CDS  NC_009802  1300576  1301436  861  hypothetical protein  YP_001467147  decreased coverage  0.00213305  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2025  CDS  NC_009802  1297029  1297922  894  bifunctional riboflavin kinase/FMN adenylyltransferase  YP_001467144  decreased coverage  0.00195986  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2052  CDS  NC_009802  1272966  1274429  1464  threonine synthase  YP_001467120  decreased coverage  0.00798394  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2119  CDS  NC_009802  1745829  1746509  681  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase  YP_001467563  decreased coverage  0.000748349  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2122  CDS  NC_009802  1743423  1743869  447  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001467560  decreased coverage  7.19345e-05  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2181  CDS  NC_009802  1248668  1249108  441  integral membrane protein  YP_001467094  decreased coverage  0.00541399  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2185  CDS  NC_009802  1250856  1251665  810  flagellar basal-body rod protein  YP_001467097  decreased coverage  0.00385896  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2186  CDS  NC_009802  1251816  1253669  1854  RNA polymerase sigma factor RpoD  YP_001467098  decreased coverage  0.00338141  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2191  CDS  NC_009802  1780499  1781461  963  putative two-component sensor  YP_001467595  decreased coverage  0.00189508  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2255  CDS  NC_009802  1047129  1047332  204  hypothetical protein  YP_001466893  decreased coverage  0.000208138  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
CCC13826_2264  CDS  NC_009802  1147647  1147808  162  hypothetical protein  YP_001466980  decreased coverage  0.000245586  n/a    Campylobacter concisus 13826  Bacteria 
 
 
-
 
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