66 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
SaurJH9_0002  CDS  NC_009487  2211  3344  +  1134  DNA polymerase III subunit beta  YP_001245392  decreased coverage  0.00213885  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0017  CDS  NC_009487  22503  23786  +  1284  adenylosuccinate synthetase  YP_001245407  decreased coverage  0.000177457  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0024  CDS  NC_009487  33747  34226  +  480  rRNA large subunit methyltransferase  YP_001245414  decreased coverage  0.000337367  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0121  CDS  NC_009487  143778  144533  -  756  regulatory protein GntR, HTH  YP_001245504  decreased coverage  0.000000430087  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0197  CDS  NC_009487  237269  237847  +  579  peptidase M23B  YP_001245580  decreased coverage  0.00125912  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0276  CDS  NC_009487  332384  334228  +  1845  hypothetical protein  YP_001245659  decreased coverage  0.000445544  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0314  CDS  NC_009487  366560  366823  +  264  hypothetical protein  YP_001245697  decreased coverage  0.00159523  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0398  CDS  NC_009487  431629  432342  +  714  hypothetical protein  YP_001245780  decreased coverage  0.00295424  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0399  CDS  NC_009487  432367  433209  +  843  ABC transporter related  YP_001245781  decreased coverage  0.00135528  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0500  CDS  NC_009487  539641  539958  +  318  hypothetical protein  YP_001245880  decreased coverage  0.00615814  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0501  CDS  NC_009487  539965  540561  +  597  recombination protein RecR  YP_001245881  decreased coverage  0.00457535  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0520  CDS  NC_009487  562064  562195  +  132  hypothetical protein  YP_001245900  decreased coverage  0.0000000979561  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0521  CDS  NC_009487  562218  563570  +  1353  bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase  YP_001245901  decreased coverage  0.0000119793  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0568  CDS  NC_009487  627943  628356  +  414  30S ribosomal protein S12  YP_001245948  decreased coverage  0.0000132236  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0569  CDS  NC_009487  628422  628892  +  471  30S ribosomal protein S7  YP_001245949  decreased coverage  0.0000147883  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0570  CDS  NC_009487  629015  631096  +  2082  elongation factor G  YP_001245950  decreased coverage  0.000161061  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0571  CDS  NC_009487  631313  632497  +  1185  elongation factor Tu  YP_001245951  decreased coverage  0.0000209792  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0659  CDS  NC_009487  725597  726361  +  765  WecB/TagA/CpsF family glycosyl transferase  YP_001246038  decreased coverage  0.00000544734  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0687  CDS  NC_009487  755506  756123  +  618  hypothetical protein  YP_001246066  decreased coverage  0.00131316  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0688  CDS  NC_009487  756139  757146  +  1008  phosphate transporter  YP_001246067  decreased coverage  0.0000897538  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0770  CDS  NC_009487  841043  842113  -  1071  diguanylate cyclase  YP_001246149  decreased coverage  0.000555933  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0804  CDS  NC_009487  881898  882638  +  741  esterase/lipase-like protein  YP_001246182  decreased coverage  0.00548514  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0838  CDS  NC_009487  910458  911483  +  1026  ABC transporter related  YP_001246215  decreased coverage  0.00107302  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0885  CDS  NC_009487  936156  936578  +  423  RinA family phage transcriptional regulator  YP_001246262  decreased coverage  0.0000116331  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0886  CDS  NC_009487  936766  937260  +  495  terminase small subunit  YP_001246263  decreased coverage  0.0000133411  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0961  CDS  NC_009487  1006448  1007653  -  1206  argininosuccinate synthase  YP_001246338  decreased coverage  0.00623477  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1008  CDS  NC_009487  1061051  1062895  +  1845  sodium/hydrogen exchanger  YP_001246385  decreased coverage  0.000272114  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1016  CDS  NC_009487  1071630  1073114  +  1485  UDP-N-acetylmuramoylalanyl-D-glutamate--L- lysine ligase  YP_001246393  decreased coverage  0.00000991914  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1026  CDS  NC_009487  1080171  1080407  +  237  hypothetical protein  YP_001246403  decreased coverage  0.000146793  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1124  CDS  NC_009487  1166246  1166728  +  483  phosphoribosylaminoimidazole carboxylase, catalytic subunit  YP_001246500  decreased coverage  0.000403664  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1157  CDS  NC_009487  1200474  1200749  +  276  hypothetical protein  YP_001246533  decreased coverage  0.0000000442002  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1158  CDS  NC_009487  1200893  1201432  +  540  XRE family transcriptional regulator  YP_001246534  decreased coverage  0.00000119717  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1165  CDS  NC_009487  1207091  1208443  -  1353  manganese transport protein MntH  YP_001246541  decreased coverage  0.00000527226  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1166  CDS  NC_009487  1208627  1209241  -  615  hypothetical protein  YP_001246542  decreased coverage  0.000000394538  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1283  CDS  NC_009487  1331733  1331921  -  189  50S ribosomal protein L28  YP_001246658  decreased coverage  0.000317964  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1360  CDS  NC_009487  1423825  1425546  +  1722  aerobic glycerol-3-phosphate dehydrogenase  YP_001246732  decreased coverage  0.0000254105  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1361  CDS  NC_009487  1425693  1426610  +  918  alpha/beta hydrolase fold  YP_001246733  decreased coverage  0.000732277  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1409  CDS  NC_009487  1470711  1471073  -  363  large-conductance mechanosensitive channel  YP_001246779  decreased coverage  0.0000000924927  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1410  CDS  NC_009487  1471277  1472923  +  1647  choline/carnitine/betaine transporter  YP_001246780  decreased coverage  0.0000212445  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1417  CDS  NC_009487  1480906  1483308  +  2403  DNA topoisomerase IV subunit A  YP_001246787  decreased coverage  0.000310751  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1418  CDS  NC_009487  1483558  1485018  +  1461  amino acid carrier protein  YP_001246788  decreased coverage  0.00000791908  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1619  CDS  NC_009487  1720161  1721267  -  1107  RNA polymerase sigma factor RpoD  YP_001246988  decreased coverage  0.0000324281  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1685  CDS  NC_009487  1782908  1784182  +  1275  recombination factor protein RarA  YP_001247051  decreased coverage  0.00000466548  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1702  CDS  NC_009487  1804839  1805123  -  285  50S ribosomal protein L27  YP_001247068  decreased coverage  0.00000326176  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1703  CDS  NC_009487  1805135  1805455  -  321  hypothetical protein  YP_001247069  decreased coverage  0.00000260315  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1704  CDS  NC_009487  1805461  1805769  -  309  50S ribosomal protein L21  YP_001247070  decreased coverage  0.00000276664  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1775  CDS  NC_009487  1885676  1886278  +  603  30S ribosomal protein S4  YP_001247141  decreased coverage  0.000000344809  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_1776  CDS  NC_009487  1886494  1887237  -  744  glycerophosphoryl diester phosphodiesterase  YP_001247142  decreased coverage  0.000170657  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2068  CDS  NC_009487  2180828  2181571  +  744  hypothetical protein  YP_001247427  decreased coverage  0.000000680357  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2069  CDS  NC_009487  2181596  2182855  -  1260  hypothetical protein  YP_001247428  decreased coverage  0.00000643074  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2070  CDS  NC_009487  2183052  2183678  +  627  hypothetical protein  YP_001247429  decreased coverage  0.00000267475  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2135  CDS  NC_009487  2258977  2259417  -  441  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001247493  decreased coverage  0.000000114205  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_2136  CDS  NC_009487  2259451  2260716  -  1266  UDP-N-acetylglucosamine 1-carboxyvinyltransferase  YP_001247494  decreased coverage  0.000004492  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_2201  CDS  NC_009487  2341135  2341818  -  684  hemolysin III family channel protein  YP_001247558  decreased coverage  0.000726691  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2202  CDS  NC_009487  2341837  2343024  -  1188  UTP--glucose-1-phosphate uridylyltransferase  YP_001247559  decreased coverage  0.00314503  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2318  CDS  NC_009487  2446867  2447703  +  837  urease accessory protein UreD  YP_001247674  decreased coverage  0.00527457  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2319  CDS  NC_009487  2447892  2448239  -  348  SarA family transcriptional regulator  YP_001247675  decreased coverage  0.00364368  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2428  CDS  NC_009487  2564442  2564624  -  183  hypothetical protein  YP_001247783  decreased coverage  0.0000000617441  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_2429  CDS  NC_009487  2564708  2565175  -  468  activator of Hsp90 ATPase 1 family protein  YP_001247784  decreased coverage  0.000000180595  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2463  CDS  NC_009487  2598398  2599225  -  828  hypothetical protein  YP_001247816  decreased coverage  0.00247056  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2496  CDS  NC_009487  2635942  2636760  -  819  hypothetical protein  YP_001247849  decreased coverage  0.0000716186  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_2497  CDS  NC_009487  2636771  2637592  -  822  hypothetical protein  YP_001247850  decreased coverage  0.00000189665  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_2714  CDS  NC_009487  2885730  2886368  +  639  pyrrolidone-carboxylate peptidase  YP_001248066  decreased coverage  0.000301131  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2715  CDS  NC_009487  2886487  2887254  -  768  hypothetical protein  YP_001248067  decreased coverage  0.0000263441  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
-
 
SaurJH9_R0035  tRNA  NC_009487  2004669  2004744  -  76  tRNA-Asp    decreased coverage  0.0000000429398  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_R0036  tRNA  NC_009487  2004766  2004839  -  74  tRNA-Met    decreased coverage  0.0000000382466  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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