66 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
SaurJH9_0002  CDS  NC_009487  2211  3344  1134  DNA polymerase III subunit beta  YP_001245392  decreased coverage  0.00213885  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0017  CDS  NC_009487  22503  23786  1284  adenylosuccinate synthetase  YP_001245407  decreased coverage  0.000177457  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0024  CDS  NC_009487  33747  34226  480  rRNA large subunit methyltransferase  YP_001245414  decreased coverage  0.000337367  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0121  CDS  NC_009487  143778  144533  756  regulatory protein GntR, HTH  YP_001245504  decreased coverage  4.30087e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0197  CDS  NC_009487  237269  237847  579  peptidase M23B  YP_001245580  decreased coverage  0.00125912  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0276  CDS  NC_009487  332384  334228  1845  hypothetical protein  YP_001245659  decreased coverage  0.000445544  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0314  CDS  NC_009487  366560  366823  264  hypothetical protein  YP_001245697  decreased coverage  0.00159523  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0398  CDS  NC_009487  431629  432342  714  hypothetical protein  YP_001245780  decreased coverage  0.00295424  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0399  CDS  NC_009487  432367  433209  843  ABC transporter related  YP_001245781  decreased coverage  0.00135528  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0500  CDS  NC_009487  539641  539958  318  hypothetical protein  YP_001245880  decreased coverage  0.00615814  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0501  CDS  NC_009487  539965  540561  597  recombination protein RecR  YP_001245881  decreased coverage  0.00457535  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0520  CDS  NC_009487  562064  562195  132  hypothetical protein  YP_001245900  decreased coverage  9.79561e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0521  CDS  NC_009487  562218  563570  1353  bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase  YP_001245901  decreased coverage  1.19793e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0568  CDS  NC_009487  627943  628356  414  30S ribosomal protein S12  YP_001245948  decreased coverage  1.32236e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0569  CDS  NC_009487  628422  628892  471  30S ribosomal protein S7  YP_001245949  decreased coverage  1.47883e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0570  CDS  NC_009487  629015  631096  2082  elongation factor G  YP_001245950  decreased coverage  0.000161061  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0571  CDS  NC_009487  631313  632497  1185  elongation factor Tu  YP_001245951  decreased coverage  2.09792e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0659  CDS  NC_009487  725597  726361  765  WecB/TagA/CpsF family glycosyl transferase  YP_001246038  decreased coverage  5.44734e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0687  CDS  NC_009487  755506  756123  618  hypothetical protein  YP_001246066  decreased coverage  0.00131316  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0688  CDS  NC_009487  756139  757146  1008  phosphate transporter  YP_001246067  decreased coverage  8.97538e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0770  CDS  NC_009487  841043  842113  1071  diguanylate cyclase  YP_001246149  decreased coverage  0.000555933  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0804  CDS  NC_009487  881898  882638  741  esterase/lipase-like protein  YP_001246182  decreased coverage  0.00548514  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0838  CDS  NC_009487  910458  911483  1026  ABC transporter related  YP_001246215  decreased coverage  0.00107302  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0885  CDS  NC_009487  936156  936578  423  RinA family phage transcriptional regulator  YP_001246262  decreased coverage  1.16331e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0886  CDS  NC_009487  936766  937260  495  terminase small subunit  YP_001246263  decreased coverage  1.33411e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_0961  CDS  NC_009487  1006448  1007653  1206  argininosuccinate synthase  YP_001246338  decreased coverage  0.00623477  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1008  CDS  NC_009487  1061051  1062895  1845  sodium/hydrogen exchanger  YP_001246385  decreased coverage  0.000272114  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1016  CDS  NC_009487  1071630  1073114  1485  UDP-N-acetylmuramoylalanyl-D-glutamate--L- lysine ligase  YP_001246393  decreased coverage  9.91914e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1026  CDS  NC_009487  1080171  1080407  237  hypothetical protein  YP_001246403  decreased coverage  0.000146793  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1124  CDS  NC_009487  1166246  1166728  483  phosphoribosylaminoimidazole carboxylase, catalytic subunit  YP_001246500  decreased coverage  0.000403664  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1157  CDS  NC_009487  1200474  1200749  276  hypothetical protein  YP_001246533  decreased coverage  4.42002e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1158  CDS  NC_009487  1200893  1201432  540  XRE family transcriptional regulator  YP_001246534  decreased coverage  1.19717e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1165  CDS  NC_009487  1207091  1208443  1353  manganese transport protein MntH  YP_001246541  decreased coverage  5.27226e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1166  CDS  NC_009487  1208627  1209241  615  hypothetical protein  YP_001246542  decreased coverage  3.94538e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1283  CDS  NC_009487  1331733  1331921  189  50S ribosomal protein L28  YP_001246658  decreased coverage  0.000317964  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1360  CDS  NC_009487  1423825  1425546  1722  aerobic glycerol-3-phosphate dehydrogenase  YP_001246732  decreased coverage  2.54105e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1361  CDS  NC_009487  1425693  1426610  918  alpha/beta hydrolase fold  YP_001246733  decreased coverage  0.000732277  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1409  CDS  NC_009487  1470711  1471073  363  large-conductance mechanosensitive channel  YP_001246779  decreased coverage  9.24927e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1410  CDS  NC_009487  1471277  1472923  1647  choline/carnitine/betaine transporter  YP_001246780  decreased coverage  2.12445e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1417  CDS  NC_009487  1480906  1483308  2403  DNA topoisomerase IV subunit A  YP_001246787  decreased coverage  0.000310751  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1418  CDS  NC_009487  1483558  1485018  1461  amino acid carrier protein  YP_001246788  decreased coverage  7.91908e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1619  CDS  NC_009487  1720161  1721267  1107  RNA polymerase sigma factor RpoD  YP_001246988  decreased coverage  3.24281e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1685  CDS  NC_009487  1782908  1784182  1275  recombination factor protein RarA  YP_001247051  decreased coverage  4.66548e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1702  CDS  NC_009487  1804839  1805123  285  50S ribosomal protein L27  YP_001247068  decreased coverage  3.26176e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1703  CDS  NC_009487  1805135  1805455  321  hypothetical protein  YP_001247069  decreased coverage  2.60315e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1704  CDS  NC_009487  1805461  1805769  309  50S ribosomal protein L21  YP_001247070  decreased coverage  2.76664e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1775  CDS  NC_009487  1885676  1886278  603  30S ribosomal protein S4  YP_001247141  decreased coverage  3.44809e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_1776  CDS  NC_009487  1886494  1887237  744  glycerophosphoryl diester phosphodiesterase  YP_001247142  decreased coverage  0.000170657  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2068  CDS  NC_009487  2180828  2181571  744  hypothetical protein  YP_001247427  decreased coverage  6.80357e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2069  CDS  NC_009487  2181596  2182855  1260  hypothetical protein  YP_001247428  decreased coverage  6.43074e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2070  CDS  NC_009487  2183052  2183678  627  hypothetical protein  YP_001247429  decreased coverage  2.67475e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2135  CDS  NC_009487  2258977  2259417  441  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001247493  decreased coverage  1.14205e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2136  CDS  NC_009487  2259451  2260716  1266  UDP-N-acetylglucosamine 1-carboxyvinyltransferase  YP_001247494  decreased coverage  4.492e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2201  CDS  NC_009487  2341135  2341818  684  hemolysin III family channel protein  YP_001247558  decreased coverage  0.000726691  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2202  CDS  NC_009487  2341837  2343024  1188  UTP--glucose-1-phosphate uridylyltransferase  YP_001247559  decreased coverage  0.00314503  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2318  CDS  NC_009487  2446867  2447703  837  urease accessory protein UreD  YP_001247674  decreased coverage  0.00527457  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2319  CDS  NC_009487  2447892  2448239  348  SarA family transcriptional regulator  YP_001247675  decreased coverage  0.00364368  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2428  CDS  NC_009487  2564442  2564624  183  hypothetical protein  YP_001247783  decreased coverage  6.17441e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2429  CDS  NC_009487  2564708  2565175  468  activator of Hsp90 ATPase 1 family protein  YP_001247784  decreased coverage  1.80595e-07  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2463  CDS  NC_009487  2598398  2599225  828  hypothetical protein  YP_001247816  decreased coverage  0.00247056  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2496  CDS  NC_009487  2635942  2636760  819  hypothetical protein  YP_001247849  decreased coverage  7.16186e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2497  CDS  NC_009487  2636771  2637592  822  hypothetical protein  YP_001247850  decreased coverage  1.89665e-06  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2714  CDS  NC_009487  2885730  2886368  639  pyrrolidone-carboxylate peptidase  YP_001248066  decreased coverage  0.000301131  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_2715  CDS  NC_009487  2886487  2887254  768  hypothetical protein  YP_001248067  decreased coverage  2.63441e-05  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_R0035  tRNA  NC_009487  2004669  2004744  76  tRNA-Asp    decreased coverage  4.29398e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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SaurJH9_R0036  tRNA  NC_009487  2004766  2004839  74  tRNA-Met    decreased coverage  3.82466e-08  n/a    Staphylococcus aureus subsp. aureus JH9  Bacteria 
 
 
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