200 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Cphy_0054  CDS  NC_010001  72635  73597  963  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase  YP_001557183  decreased coverage  6.03646e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0072  CDS  NC_010001  102256  103299  1044  hypothetical protein  YP_001557201  decreased coverage  1.40127e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0097  CDS  NC_010001  129389  129880  492  XRE family transcriptional regulator  YP_001557226  decreased coverage  7.70328e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0098  CDS  NC_010001  130233  131072  840  MerR family transcriptional regulator  YP_001557227  decreased coverage  2.52188e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0127  CDS  NC_010001  170160  170705  546  AbrB family transcriptional regulator  YP_001557255  decreased coverage  4.12675e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0128  CDS  NC_010001  170950  172281  1332  amino acid permease-associated region  YP_001557256  decreased coverage  3.57804e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0141  CDS  NC_010001  184253  186082  1830  ATP-dependent metalloprotease FtsH  YP_001557269  decreased coverage  2.37353e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0213  CDS  NC_010001  262309  262965  657  FMN-binding domain-containing protein  YP_001557339  decreased coverage  5.85453e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0214  CDS  NC_010001  262958  263719  762  electron transport complex, RnfABCDGE type, E subunit  YP_001557340  decreased coverage  1.78696e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0258  CDS  NC_010001  319531  319989  459  CheW protein  YP_001557384  decreased coverage  5.34163e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0344  CDS  NC_010001  437841  438587  747  membrane protein-like protein  YP_001557470  decreased coverage  0.00594365  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0345  CDS  NC_010001  438772  439278  507  hypothetical protein  YP_001557471  decreased coverage  0.00894056  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0364  CDS  NC_010001  464091  464651  561  GPR1/FUN34/yaaH family protein  YP_001557490  decreased coverage  4.85253e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0378  CDS  NC_010001  480918  482219  1302  ATP-dependent protease ATP-binding subunit ClpX  YP_001557504  decreased coverage  1.66116e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0379  CDS  NC_010001  482373  484802  2430  ATP-dependent protease La  YP_001557505  decreased coverage  0.00242685  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0380  CDS  NC_010001  485065  485670  606  GTP-binding protein HSR1-related  YP_001557506  decreased coverage  0.000322823  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0422  CDS  NC_010001  536737  537597  861  hypothetical protein  YP_001557548  decreased coverage  2.26876e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0455  CDS  NC_010001  579149  580342  1194  aminotransferase class I and II  YP_001557581  decreased coverage  5.48039e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0456  CDS  NC_010001  580553  581356  804  hypothetical protein  YP_001557582  decreased coverage  8.13872e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0475  CDS  NC_010001  604922  606331  1410  TPR repeat-containing protein  YP_001557601  decreased coverage  2.69672e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0504  CDS  NC_010001  645905  646405  501  hypothetical protein  YP_001557630  decreased coverage  2.96754e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0505  CDS  NC_010001  646539  647039  501  hypothetical protein  YP_001557631  decreased coverage  3.23975e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0520  CDS  NC_010001  660574  660999  426  beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ  YP_001557646  decreased coverage  0.00689323  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0534  CDS  NC_010001  679533  680795  1263  GTP-binding proten HflX  YP_001557660  decreased coverage  1.87355e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0535  CDS  NC_010001  681064  683466  2403  anaerobic ribonucleoside triphosphate reductase  YP_001557661  decreased coverage  2.1031e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0568  CDS  NC_010001  731604  732623  1020  LacI family transcription regulator  YP_001557694  decreased coverage  8.65309e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0581  CDS  NC_010001  749024  750025  1002  monosaccharide-transporting ATPase  YP_001557707  decreased coverage  5.66626e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0591  CDS  NC_010001  767507  769447  1941  hypothetical protein  YP_001557717  decreased coverage  7.70924e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0592  CDS  NC_010001  769518  770888  1371  extracellular solute-binding protein  YP_001557718  decreased coverage  0.000165278  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0594  CDS  NC_010001  771976  772857  882  binding-protein-dependent transport systems inner membrane component  YP_001557720  decreased coverage  7.40706e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0612  CDS  NC_010001  796578  797663  1086  VanZ family protein  YP_001557738  decreased coverage  5.42073e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0617  CDS  NC_010001  802351  804156  1806  signal transduction histidine kinase, LytS  YP_001557743  decreased coverage  0.000118268  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0618  CDS  NC_010001  804146  804922  777  two component AraC family transcriptional regulator  YP_001557744  decreased coverage  6.05397e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0619  CDS  NC_010001  805147  806538  1392  extracellular solute-binding protein  YP_001557745  decreased coverage  3.7115e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0627  CDS  NC_010001  814818  815546  729  phosphotransferase domain-containing protein  YP_001557753  decreased coverage  1.35059e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0659  CDS  NC_010001  859616  860446  831  hypothetical protein  YP_001557785  decreased coverage  2.25162e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0695  CDS  NC_010001  900644  901510  867  binding-protein-dependent transport systems inner membrane component  YP_001557821  decreased coverage  2.07262e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0696  CDS  NC_010001  901526  902437  912  binding-protein-dependent transport systems inner membrane component  YP_001557822  decreased coverage  0.000104269  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0706  CDS  NC_010001  914234  914629  396  LrgA family protein  YP_001557832  decreased coverage  1.56699e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0707  CDS  NC_010001  914626  915318  693  LrgB family protein  YP_001557833  decreased coverage  9.04549e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0713  CDS  NC_010001  925284  926060  777  zinc/iron permease  YP_001557839  decreased coverage  2.33647e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0714  CDS  NC_010001  926191  926694  504  GreA/GreB family elongation factor  YP_001557840  decreased coverage  6.38599e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0760  CDS  NC_010001  981285  982148  864  hypothetical protein  YP_001557886  decreased coverage  4.55591e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0764  CDS  NC_010001  986994  988166  1173  basic membrane lipoprotein  YP_001557890  decreased coverage  1.34233e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0765  CDS  NC_010001  988605  990140  1536  ABC transporter related  YP_001557891  decreased coverage  1.01087e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0772  CDS  NC_010001  996904  998826  1923  integral membrane sensor signal transduction histidine kinase  YP_001557898  decreased coverage  7.85951e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0804  CDS  NC_010001  1028119  1029336  1218  hypothetical protein  YP_001557930  decreased coverage  1.15275e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0848  CDS  NC_010001  1082551  1083258  708  polar amino acid ABC transporter, inner membrane subunit  YP_001557973  decreased coverage  4.04744e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0853  CDS  NC_010001  1087601  1089319  1719  putative signal transduction histidine kinase  YP_001557978  decreased coverage  0.000112347  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0854  CDS  NC_010001  1089598  1090047  450  transcriptional regulator, TrmB  YP_001557979  decreased coverage  5.8861e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0855  CDS  NC_010001  1090050  1092317  2268  ABC transporter related  YP_001557980  decreased coverage  3.35378e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0875  CDS  NC_010001  1123806  1125716  1911  glycoside hydrolase family protein  YP_001558000  decreased coverage  4.12559e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0882  CDS  NC_010001  1132706  1133635  930  orotidine 5'-phosphate decarboxylase  YP_001558007  decreased coverage  4.14792e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0883  CDS  NC_010001  1133655  1135010  1356  MATE efflux family protein  YP_001558008  decreased coverage  2.30192e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0909  CDS  NC_010001  1161882  1162484  603  hypothetical protein  YP_001558033  decreased coverage  1.49992e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0910  CDS  NC_010001  1162542  1163021  480  rRNA large subunit methyltransferase  YP_001558034  decreased coverage  7.42092e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0935  CDS  NC_010001  1193390  1195306  1917  HD superfamily phosphohydrolase-like protein  YP_001558058  decreased coverage  5.71801e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0959  CDS  NC_010001  1225473  1226627  1155  hypothetical protein  YP_001558080  decreased coverage  4.80271e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_0988  CDS  NC_010001  1253183  1253779  597  NAD(P)H dehydrogenase (quinone)  YP_001558107  decreased coverage  1.05649e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1022  CDS  NC_010001  1292305  1293624  1320  Na+/H+ antiporter NhaC  YP_001558141  decreased coverage  0.000105643  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1030  CDS  NC_010001  1303422  1303622  201  hypothetical protein  YP_001558149  decreased coverage  1.06194e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1052  CDS  NC_010001  1323957  1324958  1002  hypothetical protein  YP_001558171  decreased coverage  2.9525e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1053  CDS  NC_010001  1325075  1326331  1257  methyl-accepting chemotaxis sensory transducer  YP_001558172  decreased coverage  1.93482e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1054  CDS  NC_010001  1326734  1327660  927  hypothetical protein  YP_001558173  decreased coverage  4.26139e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1072    NC_010001  1357464  1358208  745      decreased coverage  4.64883e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1134  CDS  NC_010001  1427155  1428675  1521  ABC transporter related  YP_001558251  decreased coverage  4.97905e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1141  CDS  NC_010001  1439136  1440095  960  hypothetical protein  YP_001558258  decreased coverage  4.54744e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1142  CDS  NC_010001  1440284  1440844  561  hypothetical protein  YP_001558259  decreased coverage  6.05466e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1148  CDS  NC_010001  1447986  1448957  972  AraC family transcriptional regulator  YP_001558265  decreased coverage  0.00767065  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1177  CDS  NC_010001  1493642  1494436  795  class II aldolase/adducin family protein  YP_001558294  decreased coverage  9.51199e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1219  CDS  NC_010001  1538568  1539884  1317  xylose isomerase  YP_001558336  decreased coverage  3.57804e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1283  CDS  NC_010001  1611686  1612924  1239  hypothetical protein  YP_001558400  decreased coverage  2.25003e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1284  CDS  NC_010001  1613051  1613686  636  hypothetical protein  YP_001558401  decreased coverage  1.13492e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1292  CDS  NC_010001  1620790  1621257  468  hypothetical protein  YP_001558409  decreased coverage  4.3347e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1319  CDS  NC_010001  1651275  1651745  471  hypothetical protein  YP_001558435  decreased coverage  1.44039e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1327  CDS  NC_010001  1658810  1659997  1188  acetate kinase  YP_001558443  decreased coverage  2.37028e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1329  CDS  NC_010001  1660735  1660920  186  ribosomal protein L32  YP_001558445  decreased coverage  1.50645e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1330  CDS  NC_010001  1661074  1662252  1179  exonuclease-like protein  YP_001558446  decreased coverage  1.56681e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1331  CDS  NC_010001  1662522  1664081  1560  phospholipase D/transphosphatidylase  YP_001558447  decreased coverage  1.12238e-06  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1393  CDS  NC_010001  1733168  1734928  1761  histidine kinase internal region  YP_001558507  decreased coverage  0.000217072  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1428  CDS  NC_010001  1764393  1765940  1548  acetaldehyde dehydrogenase (acetylating)  YP_001558542  decreased coverage  0.00173922  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1469  CDS  NC_010001  1811778  1812542  765  ABC-2 type transporter  YP_001558582  decreased coverage  9.52101e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1511  CDS  NC_010001  1860368  1860739  372  hypothetical protein  YP_001558624  decreased coverage  1.28946e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1512  CDS  NC_010001  1860777  1861352  576  rhomboid family protein  YP_001558625  decreased coverage  3.53415e-09  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1519  CDS  NC_010001  1868957  1869568  612  hypothetical protein  YP_001558632  decreased coverage  0.000161709  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1547  CDS  NC_010001  1899632  1901068  1437  binding-protein-dependent transport systems inner membrane component  YP_001558660  decreased coverage  2.65018e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1582  CDS  NC_010001  1946429  1947925  1497  signal transduction histidine kinase, LytS  YP_001558695  decreased coverage  0.0045193  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1588  CDS  NC_010001  1954999  1956150  1152  SecC motif-containing protein  YP_001558701  decreased coverage  0.000121054  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1601  CDS  NC_010001  1975622  1976962  1341  signal transduction histidine kinase regulating citrate/malate metabolism  YP_001558714  decreased coverage  0.00658825  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1608  CDS  NC_010001  1981367  1981924  558  CDP-alcohol phosphatidyltransferase  YP_001558721  decreased coverage  0.00805747  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1618  CDS  NC_010001  1995126  1997270  2145  hypothetical protein  YP_001558729  decreased coverage  1.40855e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1658  CDS  NC_010001  2040473  2041585  1113  aldo/keto reductase  YP_001558769  decreased coverage  1.89792e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1663  CDS  NC_010001  2044731  2045111  381  glyoxalase/bleomycin resistance protein/dioxygenase  YP_001558774  decreased coverage  3.63775e-07  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1668  CDS  NC_010001  2048730  2049575  846  phosphate ABC transporter, inner membrane subunit PstC  YP_001558779  decreased coverage  3.5104e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1669  CDS  NC_010001  2049583  2050419  837  phosphate ABC transporter, inner membrane subunit PstA  YP_001558780  decreased coverage  3.31352e-08  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1745  CDS  NC_010001  2148570  2149625  1056  methylated-DNA--protein-cysteine methyltransferase  YP_001558856  decreased coverage  0.00607574  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1802  CDS  NC_010001  2221794  2223398  1605  ATPase, P-type (transporting), HAD superfamily, subfamily IC  YP_001558910  decreased coverage  0.00239291  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1809  CDS  NC_010001  2233626  2234207  582  ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5  YP_001558917  decreased coverage  0.00140749  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1860  CDS  NC_010001  2288762  2289757  996  hypothetical protein  YP_001558968  decreased coverage  0.000102596  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
Cphy_1884  CDS  NC_010001  2325318  2326274  957  dihydrouridine synthase DuS  YP_001558992  decreased coverage  2.36711e-05  n/a    Clostridium phytofermentans ISDg  Bacteria 
 
 
-
 
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