178 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
RoseRS_0077  CDS  NC_009523  92146  92619  474  transcription elongation factor GreA  YP_001274468  decreased coverage  0.00207801  normal  0.174892  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0101  CDS  NC_009523  121916  122973  1058  transposase, IS4 family protein  YP_001274492  decreased coverage  0.000553926  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0102    NC_009523  123128  123371  244      decreased coverage  4.09194e-05  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0156    NC_009523  200194  202012  1819      decreased coverage  0.00432374  normal  0.387266  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0157  CDS  NC_009523  200410  201467  1058  transposase, IS4 family protein  YP_001274543  decreased coverage  0.00114927  normal  0.566503  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0191  CDS  NC_009523  237364  238572  1209  RpoD family RNA polymerase sigma factor  YP_001274577  unclonable  1.66048e-07  decreased coverage  0.00192271  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0192  CDS  NC_009523  238834  239115  282  transcriptional coactivator/pterin dehydratase  YP_001274578  hitchhiker  0.00109054  decreased coverage  0.00158686  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0193  CDS  NC_009523  239267  239779  513  hypothetical protein  YP_001274579  hitchhiker  0.00635548  decreased coverage  0.00169669  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0296  CDS  NC_009523  377692  378372  681  hypothetical protein  YP_001274678  decreased coverage  8.54832e-05  normal  0.0172701  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0330  CDS  NC_009523  419550  421157  1608  phosphodiesterase  YP_001274712  decreased coverage  0.000340911  decreased coverage  0.00581399  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0427  CDS  NC_009523  545265  545996  732  SOS-response transcriptional repressor, LexA  YP_001274808  decreased coverage  0.000783758  normal  0.159781  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0445  CDS  NC_009523  564523  564984  462  hypothetical protein  YP_001274821  decreased coverage  1.09917e-05  normal  0.0348791  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0635  CDS  NC_009523  787048  788105  1058  transposase, IS4 family protein  YP_001275007  decreased coverage  0.000109907  normal  0.288835  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0662  CDS  NC_009523  827964  828494  531  hypothetical protein  YP_001275031  decreased coverage  7.68086e-06  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0663  CDS  NC_009523  828816  829745  930  LmbE family protein  YP_001275032  decreased coverage  0.000891678  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0679  CDS  NC_009523  845692  846234  543  hypothetical protein  YP_001275046  decreased coverage  0.00667306  normal  0.0312007  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0687  CDS  NC_009523  853491  860279  6789  TPR repeat-containing protein  YP_001275054  normal  decreased coverage  0.00419541  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0714  CDS  NC_009523  885704  886081  378  hypothetical protein  YP_001275080  decreased coverage  0.0074508  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0741  CDS  NC_009523  919228  919746  519  adenine phosphoribosyltransferase  YP_001275107  decreased coverage  5.00572e-05  hitchhiker  0.00412029  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0748  CDS  NC_009523  925617  926543  927  asparaginase  YP_001275114  normal  0.292894  decreased coverage  0.000158237  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0749  CDS  NC_009523  926540  927427  888  methyltransferase type 11  YP_001275115  normal  0.102381  decreased coverage  0.00014415  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0750  CDS  NC_009523  927411  928670  1260  beta-ketoacyl synthase  YP_001275116  hitchhiker  3.02137e-05  decreased coverage  0.000178697  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0866  CDS  NC_009523  1081386  1082372  987  uroporphyrinogen decarboxylase  YP_001275229  decreased coverage  0.00770341  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0892  CDS  NC_009523  1105992  1108082  2091  WD-40 repeat-containing protein  YP_001275252  decreased coverage  0.000103056  unclonable  2.05441e-05  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_0942  CDS  NC_009523  1161645  1163231  1587  magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase  YP_001275301  decreased coverage  0.00162998  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1135  CDS  NC_009523  1412804  1413889  1086  oxidoreductase domain-containing protein  YP_001275492  decreased coverage  0.00022586  normal  0.596478  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1146  CDS  NC_009523  1429027  1432302  3276  TPR repeat-containing protein  YP_001275503  normal  decreased coverage  0.000383652  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1147  CDS  NC_009523  1432456  1433247  792  IstB ATP binding domain-containing protein  YP_001275504  hitchhiker  9.71836e-05  decreased coverage  0.00111999  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1148  CDS  NC_009523  1433174  1433893  720  primosome, DnaD subunit  YP_001275505  unclonable  1.49796e-08  decreased coverage  0.00111014  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1220    NC_009523  1499589  1501543  1955      decreased coverage  9.04356e-05  normal  0.888185  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1221  CDS  NC_009523  1499936  1500993  1058  transposase, IS4 family protein  YP_001275577  decreased coverage  2.0949e-06  normal  0.773505  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1258  CDS  NC_009523  1545046  1546530  1485  periplasmic solute binding protein  YP_001275613  decreased coverage  0.00438687  decreased coverage  0.000164305  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1259  CDS  NC_009523  1546822  1548213  1392  protein kinase  YP_001275614  hitchhiker  0.00720505  decreased coverage  0.00014415  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1260  CDS  NC_009523  1548441  1549184  744  silent information regulator protein Sir2  YP_001275615  normal  0.0543594  decreased coverage  0.000122982  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1261  CDS  NC_009523  1549231  1550010  780  silent information regulator protein Sir2  YP_001275616  normal  decreased coverage  0.000136292  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1262  CDS  NC_009523  1550032  1550649  618  GCN5-related N-acetyltransferase  YP_001275617  normal  decreased coverage  0.000121828  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1383  CDS  NC_009523  1695409  1696466  1058  transposase, IS4 family protein  YP_001275733  decreased coverage  1.58375e-05  hitchhiker  0.00331132  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1392  CDS  NC_009523  1701958  1702581  624  hypothetical protein  YP_001275742  decreased coverage  9.86889e-08  unclonable  8.59412e-06  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1393  CDS  NC_009523  1702602  1703030  429  TadE family protein  YP_001275743  decreased coverage  4.26497e-08  unclonable  7.76129e-06  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1394  CDS  NC_009523  1703034  1703504  471  TadE family protein  YP_001275744  decreased coverage  3.83988e-08  unclonable  8.00451e-06  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1395  CDS  NC_009523  1703587  1703829  243  hypothetical protein  YP_001275745  decreased coverage  1.4782e-08  unclonable  7.60434e-06  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1419  CDS  NC_009523  1728115  1729542  1428  peptidase dimerisation domain-containing protein  YP_001275769  decreased coverage  0.0033169  normal  0.0160825  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1430  CDS  NC_009523  1741028  1743397  2370  DNA topoisomerase I  YP_001275778  decreased coverage  0.000308935  decreased coverage  0.00155997  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1470  CDS  NC_009523  1790728  1791576  849  hypothetical protein  YP_001275816  decreased coverage  2.09311e-05  normal  0.694143  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1476  CDS  NC_009523  1795733  1796476  744  hypothetical protein  YP_001275822  decreased coverage  3.17669e-06  normal  0.706918  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1477  CDS  NC_009523  1796590  1797647  1058  transposase, IS4 family protein  YP_001275823  decreased coverage  1.36224e-05  normal  0.749326  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1507  CDS  NC_009523  1832781  1834175  1395  hypothetical protein  YP_001275851  decreased coverage  6.60776e-05  normal  0.36544  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1520  CDS  NC_009523  1852866  1856063  3198  FHA domain-containing protein  YP_001275863  decreased coverage  0.00810345  decreased coverage  0.000340593  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1577  CDS  NC_009523  1928999  1929409  411  hypothetical protein  YP_001275919  decreased coverage  1.29101e-06  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1578  CDS  NC_009523  1929592  1930314  723  hypothetical protein  YP_001275920  decreased coverage  0.000507242  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1617  CDS  NC_009523  1981527  1982939  1413  UDP-glucose/GDP-mannose dehydrogenase  YP_001275959  decreased coverage  0.00988833  normal  0.440114  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1654  CDS  NC_009523  2030058  2032982  2925  peptidoglycan binding domain-containing protein  YP_001275996  decreased coverage  0.00486103  normal  0.0226395  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1786  CDS  NC_009523  2206959  2208347  1389  cyclic nucleotide-binding protein  YP_001276126  normal  decreased coverage  0.00355982  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1873  CDS  NC_009523  2320562  2321619  1058  transposase, IS4 family protein  YP_001276212  decreased coverage  0.00916179  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1885  CDS  NC_009523  2340454  2340882  429  hypothetical protein  YP_001276224  decreased coverage  2.68985e-05  normal  0.937272  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1886  CDS  NC_009523  2340894  2342627  1734  hypothetical protein  YP_001276225  decreased coverage  0.00247487  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_1978  CDS  NC_009523  2458355  2459107  753  WecB/TagA/CpsF family glycosyl transferase  YP_001276315  decreased coverage  2.39664e-05  normal  0.455092  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2004  CDS  NC_009523  2483934  2485853  1920  acetate--CoA ligase  YP_001276340  normal  decreased coverage  0.00145816  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2005  CDS  NC_009523  2486032  2486364  333  hypothetical protein  YP_001276341  normal  decreased coverage  0.000940003  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2006  CDS  NC_009523  2487092  2487793  702  DNA polymerase III, epsilon subunit  YP_001276342  normal  0.473172  decreased coverage  0.00101697  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2007  CDS  NC_009523  2487795  2489666  1872  CBS domain-containing protein  YP_001276343  normal  0.232416  decreased coverage  0.00139706  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2008  CDS  NC_009523  2489678  2491396  1719  single-stranded-DNA-specific exonuclease RecJ  YP_001276344  hitchhiker  0.00291083  decreased coverage  0.00122076  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2009  CDS  NC_009523  2492925  2497433  4509  TPR repeat-containing protein  YP_001276345  normal  0.0574678  decreased coverage  0.000390887  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2022  CDS  NC_009523  2509920  2510546  627  hypothetical protein  YP_001276357  normal  decreased coverage  0.000948143  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2023  CDS  NC_009523  2510543  2511529  987  prephenate dehydrogenase  YP_001276358  normal  decreased coverage  0.000998915  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2024  CDS  NC_009523  2511542  2511946  405  cobalamin B12-binding domain-containing protein  YP_001276359  normal  decreased coverage  0.000794891  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2025  CDS  NC_009523  2511951  2512889  939  LAO/AO transport system ATPase  YP_001276360  normal  0.82524  decreased coverage  0.000989669  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2061  CDS  NC_009523  2552900  2553550  651  hypothetical protein  YP_001276394  normal  decreased coverage  0.000898687  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2062  CDS  NC_009523  2553547  2554479  933  hypothetical protein  YP_001276395  normal  decreased coverage  0.00103487  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2063  CDS  NC_009523  2554466  2555464  999  hypothetical protein  YP_001276396  normal  0.0829013  decreased coverage  0.00107186  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2064  CDS  NC_009523  2555540  2555953  414  hypothetical protein  YP_001276397  decreased coverage  0.00822944  decreased coverage  0.000882907  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2065  CDS  NC_009523  2555950  2557248  1299  hypothetical protein  YP_001276398  normal  0.126756  decreased coverage  0.00107186  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2066  CDS  NC_009523  2557245  2558681  1437  hypothetical protein  YP_001276399  normal  0.380444  decreased coverage  0.00122076  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2248  CDS  NC_009523  2769154  2770137  984  UbiA prenyltransferase  YP_001276577  decreased coverage  9.28316e-07  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2410  CDS  NC_009523  2981401  2981874  474  hypothetical protein  YP_001276737  decreased coverage  0.0046806  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2411  CDS  NC_009523  2981841  2982422  582  sigma 54 modulation protein/ribosomal protein S30EA  YP_001276738  decreased coverage  0.00273718  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2431  CDS  NC_009523  3004717  3005457  741  ABC transporter related  YP_001276758  hitchhiker  0.000823093  decreased coverage  0.000192607  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2432  CDS  NC_009523  3005628  3006233  606  hypothetical protein  YP_001276759  decreased coverage  1.62129e-07  decreased coverage  0.000168969  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2433  CDS  NC_009523  3006495  3007988  1494  TPR repeat-containing protein  YP_001276760  decreased coverage  8.60113e-06  decreased coverage  0.000244863  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2490  CDS  NC_009523  3077865  3079406  1542  hypothetical protein  YP_001276817  decreased coverage  9.05236e-05  normal  0.0736854  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2539  CDS  NC_009523  3134439  3137348  2910  helicase domain-containing protein  YP_001276865  unclonable  0.000371025  decreased coverage  0.000313651  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2546  CDS  NC_009523  3149427  3151457  2031  hypothetical protein  YP_001276872  decreased coverage  0.000686535  normal  0.24215  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2695  CDS  NC_009523  3351335  3351697  363  50S ribosomal protein L21  YP_001277019  decreased coverage  1.71739e-07  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2696  CDS  NC_009523  3351687  3351944  258  50S ribosomal protein L27  YP_001277020  decreased coverage  1.36289e-06  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2697  CDS  NC_009523  3351955  3352257  303  ribosomal protein L31  YP_001277021  decreased coverage  1.95547e-06  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2772  CDS  NC_009523  3456432  3457265  834  hypothetical protein  YP_001277094  decreased coverage  0.00186592  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2837  CDS  NC_009523  3540203  3540577  375  hypothetical protein  YP_001277156  decreased coverage  0.00762998  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2838  CDS  NC_009523  3540606  3541610  1005  amidohydrolase 2  YP_001277157  decreased coverage  0.0085644  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_2998  CDS  NC_009523  3762199  3763884  1686  proton-translocating NADH-quinone oxidoreductase, chain M  YP_001277312  decreased coverage  0.00848252  normal  0.769914  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3010  CDS  NC_009523  3788537  3788812  276  CRISPR-associated Cas2 family protein  YP_001277324  decreased coverage  7.64596e-05  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3045  CDS  NC_009523  3824487  3824933  447  PilT domain-containing protein  YP_001277359  decreased coverage  0.000198213  normal  0.569575  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3051  CDS  NC_009523  3831188  3831718  531  hypothetical protein  YP_001277365  decreased coverage  0.00459419  normal  0.0958603  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3054  CDS  NC_009523  3834991  3837036  2046  hypothetical protein  YP_001277368  decreased coverage  0.000100223  hitchhiker  0.00791247  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3055  CDS  NC_009523  3837147  3838109  963  inner-membrane translocator  YP_001277369  decreased coverage  1.00154e-06  hitchhiker  0.00643024  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3066    NC_009523  3852421  3853587  1167      normal  0.13129  decreased coverage  0.000989669  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3119  CDS  NC_009523  3918777  3919685  909  peptidase C60, sortase A and B  YP_001277432  decreased coverage  1.20301e-05  unclonable  1.60759e-05  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3166  CDS  NC_009523  3987718  3989166  1449  cyclic nucleotide-binding protein  YP_001277477  decreased coverage  0.00363184  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3204  CDS  NC_009523  4038224  4039771  1548  aldehyde dehydrogenase  YP_001277515  normal  decreased coverage  0.00521927  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3274  CDS  NC_009523  4124721  4125778  1058  transposase, IS4 family protein  YP_001277585  decreased coverage  0.000259909  normal  0.167835  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
RoseRS_3293  CDS  NC_009523  4141859  4142371  513  GCN5-related N-acetyltransferase  YP_001277604  decreased coverage  0.00428954  normal  Roseiflexus sp. RS-1  Bacteria 
 
 
-
 
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