48 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BURPS1106A_0088  CDS  NC_009076  82233  82385  153  hypothetical protein  YP_001064373  decreased coverage  0.00165829  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0342  CDS  NC_009076  315582  316463  882  hypothetical protein  YP_001064625  decreased coverage  0.00283447  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0442  CDS  NC_009076  407818  408297  480  hypothetical protein  YP_001064725  decreased coverage  0.00267919  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0443  CDS  NC_009076  408408  409274  867  hypothetical protein  YP_001064726  decreased coverage  0.00928843  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0899  CDS  NC_009076  884242  884745  504  AsnC family transcriptional regulator  YP_001065179  decreased coverage  0.00194159  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0903  CDS  NC_009076  888140  889360  1221  cyclopropane-fatty-acyl-phospholipid synthase  YP_001065184  decreased coverage  0.00630694  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0962  CDS  NC_009076  943298  943501  204  cold shock protein  YP_001065243  decreased coverage  0.000153995  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_0992  CDS  NC_009076  973595  974311  717  hydrophobic amino acid ABC transporter ATP-binding protein  YP_001065273  decreased coverage  0.00134652  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1042  CDS  NC_009076  1018107  1019159  1053  putative threonine-phosphate decarboxylase  YP_001065322  decreased coverage  0.0057725  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1243  CDS  NC_009076  1220216  1220995  780  short chain dehydrogenase/reductase family oxidoreductase  YP_001065522  decreased coverage  0.00809972  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1254  CDS  NC_009076  1231931  1232635  705  KDP operon transcriptional regulatory protein KdpE  YP_001065533  decreased coverage  0.00667548  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1794  CDS  NC_009076  1755704  1756639  936  TPR domain-containing protein  YP_001066063  decreased coverage  0.00170146  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1795  CDS  NC_009076  1756661  1757041  381  hypothetical protein  YP_001066064  decreased coverage  0.000175143  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1799  CDS  NC_009076  1761220  1761870  651  putative RNA chaperone Hfq  YP_001066068  decreased coverage  0.00326257  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1902  CDS  NC_009076  1854973  1855644  672  multidrug efflux operon transciptional regulator AmrR  YP_001066167  decreased coverage  0.00105547  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1903  CDS  NC_009076  1855788  1856987  1200  periplasmic multidrug efflux lipoprotein precursor  YP_001066168  decreased coverage  0.00844359  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1926  CDS  NC_009076  1881329  1882075  747  short chain dehydrogenase  YP_001066191  decreased coverage  0.00605891  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1927  CDS  NC_009076  1882156  1882287  132  hypothetical protein  YP_001066192  decreased coverage  0.00261238  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1966  CDS  NC_009076  1932825  1933451  627  precorrin-8X methylmutase  YP_001066231  decreased coverage  0.000701969  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_1983  CDS  NC_009076  1948156  1948950  795  short chain dehydrogenase  YP_001066248  decreased coverage  0.00829881  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_2151  CDS  NC_009076  2135624  2136601  978  gluconate 2-dehydrogenase  YP_001066416  decreased coverage  0.00341832  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_2540  tRNA  NC_009076  2492893  2492968  76  tRNA-Ala    decreased coverage  8.14865e-05  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_2546  CDS  NC_009076  2499806  2500846  1041  ABC transporter, permease protein  YP_001066800  decreased coverage  0.00426967  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_2637  CDS  NC_009076  2598836  2599624  789  putative deoxyribonuclease yjjV  YP_001066890  decreased coverage  0.00523609  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3106  CDS  NC_009076  3028086  3028949  864  putative amino acid ABC transporter, ATP-binding protein  YP_001067344  decreased coverage  0.00263887  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3221  CDS  NC_009076  3138919  3139722  804  IclR family transcriptional regulator  YP_001067459  decreased coverage  0.00625745  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3327  CDS  NC_009076  3250814  3250984  171  hypothetical protein  YP_001067564  decreased coverage  0.00460743  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3382  CDS  NC_009076  3299895  3300287  393  hypothetical protein  YP_001067619  decreased coverage  0.00775023  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3804  CDS  NC_009076  3704474  3705145  672  50S ribosomal protein L3  YP_001068034  decreased coverage  0.000896818  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_3958  CDS  NC_009076  3864014  3864235  222  putative acyl carrier protein  YP_001068178  decreased coverage  0.00426693  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A0080  CDS  NC_009078  67692  67859  168  hypothetical protein  YP_001074123  decreased coverage  0.000104568  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A0148  CDS  NC_009078  137434  138504  1071  ImpA-related N-terminal family protein  YP_001074191  decreased coverage  0.00537792  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A0854  CDS  NC_009078  850893  851135  243  hypothetical protein  YP_001074890  decreased coverage  0.0010217  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1354  CDS  NC_009078  1279971  1280105  135  pseudouridine synthase, Rsu  YP_001075388  decreased coverage  0.00821161  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1586  CDS  NC_009078  1541821  1541964  144  hypothetical protein  YP_001075620  decreased coverage  0.00446832  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1594  CDS  NC_009078  1556264  1557325  1062  syringomycin biosynthesis enzyme  YP_001075628  decreased coverage  0.00454586  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1682  CDS  NC_009078  1651547  1651687  141  hypothetical protein  YP_001075716  decreased coverage  0.000117883  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1727  CDS  NC_009078  1703212  1703529  318  hypothetical protein  YP_001075761  decreased coverage  0.00735481  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1760  CDS  NC_009078  1734616  1735350  735  protocatechuate 3,4-dioxygenase, beta subunit  YP_001075794  decreased coverage  0.00117633  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A1761  CDS  NC_009078  1735353  1735946  594  protocatechuate 3,4-dioxygenase, alpha subunit  YP_001075795  decreased coverage  0.00413537  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2067  CDS  NC_009078  2030244  2031029  786  putative guanine nucleotide exchange factor sopE  YP_001076100  decreased coverage  0.00850265  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2167  CDS  NC_009078  2121987  2122466  480  putative type IV pilus protein  YP_001076200  decreased coverage  0.00337132  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2168  CDS  NC_009078  2122506  2123096  591  putative type IV pilus protein  YP_001076201  decreased coverage  0.00445151  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2174  CDS  NC_009078  2129362  2129931  570  PilL domain-containing protein  YP_001076207  decreased coverage  0.000606761  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2305  CDS  NC_009078  2284218  2285033  816  tryptophan synthase subunit alpha  YP_001076338  decreased coverage  0.00651609  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A2901  CDS  NC_009078  2833649  2834551  903  oligopeptide ABC transporter, permease protein OppC  YP_001076930  decreased coverage  0.00914111  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A3089  CDS  NC_009078  3003181  3003522  342  hypothetical protein  YP_001077119  decreased coverage  0.00822781  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
BURPS1106A_A3176  CDS  NC_009078  3094549  3095211  663  CobQ/CobB/MinD/ParA nucleotide-binding domain-containing protein  YP_001077205  decreased coverage  0.00741579  n/a    Burkholderia pseudomallei 1106a  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>