57 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
CJJ81176_0036  CDS  NC_008787  15827  16402  576  ribonuclease HII  YP_999729  decreased coverage  0.00659063  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0070  CDS  NC_008787  59461  60903  1443  transglycosylase domain-containing protein  YP_999758  decreased coverage  0.000420554  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0167  CDS  NC_008787  145519  146403  885  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_999856  decreased coverage  5.32692e-08  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0171  CDS  NC_008787  147999  150614  2616  translation initiation factor IF-2  YP_999860  decreased coverage  0.00654664  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0417  CDS  NC_008787  364772  365401  630  pantothenate kinase  YP_001000105  decreased coverage  0.000353055  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0418  CDS  NC_008787  365388  365678  291  tram-like protein  YP_001000106  decreased coverage  0.000686182  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0421  CDS  NC_008787  367392  367676  285  aspartyl/glutamyl-tRNA amidotransferase subunit C  YP_001000109  decreased coverage  0.000446512  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0509  CDS  NC_008787  440665  444801  4137  DNA-directed RNA polymerase subunit beta  YP_001000185  decreased coverage  0.000831874  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0636  CDS  NC_008787  562535  564460  1926  macrolide-specific efflux protein macB  YP_001000309  decreased coverage  0.00901082  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0719  CDS  NC_008787  649668  650780  1113  cell division protein FtsZ  YP_001000392  decreased coverage  1.62013e-11  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0724  CDS  NC_008787  654960  656213  1254  U32 family peptidase  YP_001000397  decreased coverage  0.000627659  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0777  CDS  NC_008787  705504  706772  1269  type I restriction modification DNA specificity domain-containing protein  YP_001000445  decreased coverage  0.00318537  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0785  CDS  NC_008787  714901  716733  1833  arginine decarboxylase  YP_001000453  decreased coverage  0.00102058  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0866  CDS  NC_008787  797335  798522  1188  major facilitator family protein  YP_001000534  decreased coverage  0.00300213  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0924  CDS  NC_008787  852837  854948  2112  carbon starvation protein A  YP_001000591  decreased coverage  0.000573812  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0954  CDS  NC_008787  879618  880529  912  hypothetical protein  YP_001000620  decreased coverage  1.9077e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0955  CDS  NC_008787  880537  884049  3513  2-acyl-glycerophospho-ethanolamine acyltransferase  YP_001000621  decreased coverage  5.17979e-05  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0956  CDS  NC_008787  884094  884474  381  hypothetical protein  YP_001000622  decreased coverage  1.27838e-05  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0964  CDS  NC_008787  885274  886059  786  His/Glu/Gln/Arg/opine ABC transporter permease  YP_001000623  decreased coverage  8.18449e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0966  CDS  NC_008787  887284  889872  2589  preprotein translocase subunit SecA  YP_001000625  decreased coverage  0.00335629  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_0987  CDS  NC_008787  909207  910358  1152  hypothetical protein  YP_001000646  decreased coverage  0.00918344  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1018  CDS  NC_008787  936901  937782  882  LysR family transcriptional regulator  YP_001000679  decreased coverage  0.00162399  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1044  CDS  NC_008787  963293  963610  318  hypothetical protein  YP_001000704  decreased coverage  0.00311667  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1152  CDS  NC_008787  1070680  1072227  1548  lipooligosaccharide biosynthesis glycosyltransferase, putative  YP_001000812  decreased coverage  0.000783621  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1153  CDS  NC_008787  1072218  1073399  1182  galactosyltransferase  YP_001000813  decreased coverage  0.00265504  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1158  CDS  NC_008787  1076346  1077386  1041  sialic acid synthase  YP_001000818  decreased coverage  0.00143382  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1160  CDS  NC_008787  1078500  1079447  948  beta-1,4-N-acetylgalactosaminyltransferase  YP_001000820  decreased coverage  0.000939294  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1237  CDS  NC_008787  1154812  1155411  600  hemerythrin family non-heme iron protein  YP_001000898  decreased coverage  1.33018e-11  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1238  CDS  NC_008787  1155422  1155670  249  hypothetical protein  YP_001000899  decreased coverage  1.15747e-09  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1243  CDS  NC_008787  1159541  1160434  894  co-chaperone protein DnaJ  YP_001000903  decreased coverage  1.03422e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1282  CDS  NC_008787  1197155  1198870  1716  quinone-reactive Ni/Fe-hydrogenase, large subunit  YP_001000942  decreased coverage  0.00216082  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1285  CDS  NC_008787  1201970  1203949  1980  N-acetylmuramoyl-L-alanine amidase  YP_001000945  decreased coverage  3.81718e-09  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1288  CDS  NC_008787  1206254  1208425  2172  RelA/SpoT family protein  YP_001000948  decreased coverage  1.78094e-05  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1383  CDS  NC_008787  1307922  1308473  552  putative lipoprotein  YP_001001039  decreased coverage  0.000999244  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1389  CDS  NC_008787  1312122  1312778  657  hypothetical protein  YP_001001045  decreased coverage  1.07006e-08  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1390  CDS  NC_008787  1312946  1313308  363  endoribonuclease L-PSP, putative  YP_001001046  decreased coverage  4.83032e-11  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1391  CDS  NC_008787  1313312  1314751  1440  cryptic C4-dicarboxylate transporter DcuD, authentic frameshift  YP_001001047  decreased coverage  9.02807e-09  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1431  CDS  NC_008787  1350533  1352233  1701  putative sugar transferase  YP_001001087  decreased coverage  0.000354365  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1433  CDS  NC_008787  1353945  1355426  1482  putative sugar transferase  YP_001001089  decreased coverage  1.25132e-07  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1435  CDS  NC_008787  1356648  1358459  1812  putative sugar transferase  YP_001001091  decreased coverage  0.000134951  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1471  CDS  NC_008787  1392006  1392965  960  fibronectin-binding protein  YP_001001127  decreased coverage  4.79334e-05  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1474  CDS  NC_008787  1393992  1396757  2766  putative recombination protein RecB  YP_001001130  decreased coverage  0.000740501  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1535  CDS  NC_008787  1457223  1458989  1767  RloH  YP_001001190  decreased coverage  0.000290266  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1553  CDS  NC_008787  1474036  1475826  1791  NADH dehydrogenase subunit L  YP_001001208  decreased coverage  0.00128293  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1557  CDS  NC_008787  1477287  1478285  999  NADH dehydrogenase subunit H  YP_001001212  decreased coverage  6.61956e-08  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1734  tRNA  NC_008787  884541  884617  77  tRNA-Asp    decreased coverage  5.27786e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1735  tRNA  NC_008787  884669  884744  76  tRNA-Val    decreased coverage  5.39085e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_1736  tRNA  NC_008787  884751  884826  76  tRNA-Arg    decreased coverage  5.54415e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pTet0012  CDS  NC_008790  11155  12543  1389  cpp17  YP_001004016  decreased coverage  0.000347998  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pTet0014  CDS  NC_008790  13295  13576  282  cpp19  YP_001004018  decreased coverage  7.34938e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pTet0015  CDS  NC_008790  13605  14216  612  cpp20  YP_001004019  decreased coverage  3.11722e-06  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0022  CDS  NC_008770  15109  15516  408  hypothetical protein  YP_980081  decreased coverage  0.00345039  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0024  CDS  NC_008770  15919  16152  234  hypothetical protein  YP_980083  decreased coverage  0.000975013  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0032  CDS  NC_008770  23562  24815  1254  hypothetical protein  YP_980091  decreased coverage  0.000480252  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0039  CDS  NC_008770  27082  27492  411  hypothetical protein  YP_980098  decreased coverage  0.000322774  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0040  CDS  NC_008770  27489  27920  432  hypothetical protein  YP_980099  decreased coverage  0.000534719  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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CJJ81176_pVir0049  CDS  NC_008770  31903  33474  1572  hypothetical protein  YP_980108  decreased coverage  6.16443e-05  n/a    Campylobacter jejuni subsp. jejuni 81-176  Bacteria 
 
 
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