48 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Acel_0154  CDS  NC_008578  161495  162346  852  formyltetrahydrofolate deformylase  YP_871915  decreased coverage  0.00603763  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0241  CDS  NC_008578  261727  262008  282  glutaredoxin 2  YP_872001  decreased coverage  0.00557847  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0243  CDS  NC_008578  262978  263076  99  hypothetical protein  YP_872003  decreased coverage  0.00312792  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0244  CDS  NC_008578  263201  263458  258  DNA binding domain-containing protein  YP_872004  decreased coverage  0.00265398  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0245  CDS  NC_008578  263734  264522  789  hypothetical protein  YP_872005  decreased coverage  0.00516721  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0326  CDS  NC_008578  340134  341447  1314  preprotein translocase subunit SecY  YP_872086  normal  decreased coverage  0.000568003  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0327  CDS  NC_008578  341463  342116  654  adenylate kinase  YP_872087  normal  decreased coverage  0.000417947  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0328  CDS  NC_008578  342202  343017  816  methionine aminopeptidase, type I  YP_872088  normal  0.276708  decreased coverage  0.000433341  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0329  CDS  NC_008578  343218  343439  222  translation initiation factor 1  YP_872089  normal  0.208578  decreased coverage  0.000347298  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0330  CDS  NC_008578  343479  343592  114  50S ribosomal protein L36  YP_872090  normal  0.121743  decreased coverage  0.000353679  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0331  CDS  NC_008578  343602  343982  381  30S ribosomal protein S13  YP_872091  normal  0.13028  decreased coverage  0.000403081  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0333  CDS  NC_008578  344495  345121  627  30S ribosomal protein S4  YP_872093  normal  0.0897396  decreased coverage  0.000428085  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0334  CDS  NC_008578  345197  346222  1026  DNA-directed RNA polymerase subunit alpha  YP_872094  normal  0.0665548  decreased coverage  0.000496522  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0335  CDS  NC_008578  346271  346939  669  50S ribosomal protein L17P  YP_872095  normal  0.194907  decreased coverage  0.000408041  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0336  CDS  NC_008578  346960  347853  894  tRNA pseudouridine synthase A  YP_872096  normal  0.0521282  decreased coverage  0.000493402  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0337  CDS  NC_008578  347864  348706  843  hypothetical protein  YP_872097  normal  0.0544392  decreased coverage  0.00047063  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0625  CDS  NC_008578  675868  676275  408  cupin 2 domain-containing protein  YP_872384  normal  0.285367  decreased coverage  0.00129861  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0626  CDS  NC_008578  677301  678476  1176  acetyl-CoA acetyltransferases  YP_872385  normal  0.0380375  decreased coverage  0.00188207  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0628  CDS  NC_008578  679126  680814  1689  arginyl-tRNA synthetase  YP_872387  normal  0.0559225  decreased coverage  0.00224273  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0629  CDS  NC_008578  680814  682316  1503  diaminopimelate decarboxylase  YP_872388  normal  0.0587531  decreased coverage  0.000745702  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0632  CDS  NC_008578  684850  685782  933  homoserine kinase  YP_872391  normal  0.305614  decreased coverage  0.0010744  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0633  CDS  NC_008578  686216  688246  2031  transcription termination factor Rho  YP_872392  normal  0.0304997  decreased coverage  0.0015914  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0635  CDS  NC_008578  689199  690614  1416  glycosyl transferase family protein  YP_872394  decreased coverage  0.00269925  normal  0.0269839  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0900  CDS  NC_008578  991828  993009  1182  hypothetical protein  YP_872659  decreased coverage  0.00277153  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_0976  CDS  NC_008578  1075536  1077383  1848  AMP-dependent synthetase and ligase  YP_872735  decreased coverage  0.00986526  normal  0.875047  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1006  CDS  NC_008578  1110961  1112382  1422  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase  YP_872765  decreased coverage  0.000549268  normal  0.0206005  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1025  CDS  NC_008578  1130540  1131514  975  hypothetical protein  YP_872784  normal  0.995963  decreased coverage  0.00250254  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1026  CDS  NC_008578  1131737  1132021  285  hypothetical protein  YP_872785  normal  0.249686  decreased coverage  0.00177157  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1027  CDS  NC_008578  1132056  1132964  909  DivIVA family protein  YP_872786  normal  0.681313  decreased coverage  0.00235736  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1028  CDS  NC_008578  1133253  1133753  501  hypothetical protein  YP_872787  normal  0.0549913  decreased coverage  0.00192246  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1029  CDS  NC_008578  1134070  1137216  3147  isoleucyl-tRNA synthetase  YP_872788  normal  0.0101306  decreased coverage  0.00249031  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1075  CDS  NC_008578  1185486  1186289  804  tryptophan synthase subunit alpha  YP_872833  decreased coverage  0.00681111  normal  0.362722  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1118  CDS  NC_008578  1242885  1243859  975  binding-protein-dependent transport systems inner membrane component  YP_872876  normal  0.588573  decreased coverage  0.00594817  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1119  CDS  NC_008578  1243856  1244968  1113  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_872877  normal  decreased coverage  0.00682246  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1120  CDS  NC_008578  1244971  1246023  1053  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_872878  normal  0.667973  decreased coverage  0.00637132  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1121  CDS  NC_008578  1246070  1246297  228  preprotein translocase, SecG subunit  YP_872879  normal  decreased coverage  0.0046107  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1122  CDS  NC_008578  1246287  1247051  765  6-phosphogluconolactonase  YP_872880  normal  decreased coverage  0.00568285  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1124  CDS  NC_008578  1247989  1249515  1527  glucose-6-phosphate 1-dehydrogenase  YP_872882  normal  decreased coverage  0.00734175  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1163  CDS  NC_008578  1290919  1291596  678  cell wall surface anchor family protein  YP_872921  decreased coverage  0.0024982  normal  0.538302  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1280  CDS  NC_008578  1427140  1428528  1389  FAD dependent oxidoreductase  YP_873038  decreased coverage  0.00857441  normal  0.15279  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1312  CDS  NC_008578  1460702  1461367  666  fimbrial assembly family protein  YP_873070  normal  0.714725  decreased coverage  0.0049251  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1313  CDS  NC_008578  1461364  1462428  1065  type IV pilus assembly protein PilM  YP_873071  normal  0.269732  decreased coverage  0.00550758  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1476  CDS  NC_008578  1655559  1658855  3297  vitamin B12-dependent ribonucleotide reductase  YP_873234  decreased coverage  0.00514202  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1503  CDS  NC_008578  1697685  1698611  927  dihydrodipicolinate synthase  YP_873261  decreased coverage  2.30491e-06  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1654  CDS  NC_008578  1859958  1860995  1038  ribonuclease BN  YP_873412  decreased coverage  0.00658785  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_1686  CDS  NC_008578  1897965  1898756  792  glutamate racemase  YP_873444  decreased coverage  0.000161224  hitchhiker  6.16393e-06  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_R0009  tRNA  NC_008578  160721  160793  73  tRNA-Arg    decreased coverage  0.000808777  normal  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
Acel_R0016  tRNA  NC_008578  677124  677195  72  tRNA-Arg    normal  0.0798603  decreased coverage  0.00114239  Acidothermus cellulolyticus 11B  Bacteria 
 
 
-
 
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