144 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Gura_0015  CDS  NC_009483  22609  23628  1020  uroporphyrinogen decarboxylase  YP_001228806  decreased coverage  0.00367491  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0211  CDS  NC_009483  272329  274236  1908  molecular chaperone DnaK  YP_001229000  decreased coverage  2.28003e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0341  CDS  NC_009483  403051  403614  564  elongation factor P  YP_001229130  decreased coverage  4.84075e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0347  CDS  NC_009483  408587  409600  1014  delta-aminolevulinic acid dehydratase  YP_001229136  decreased coverage  5.08114e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0380  CDS  NC_009483  447525  448286  762  hypothetical protein  YP_001229169  decreased coverage  6.4309e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0430  CDS  NC_009483  502225  502710  486  rubrerythrin  YP_001229219  decreased coverage  0.00579708  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0431  CDS  NC_009483  502718  502921  204  putative PAS/PAC sensor protein  YP_001229220  decreased coverage  0.00281975  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0450  CDS  NC_009483  518519  519895  1377  rhodanese domain-containing protein  YP_001229239  decreased coverage  1.89467e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0541  CDS  NC_009483  633551  635314  1764  integral membrane sensor signal transduction histidine kinase  YP_001229328  decreased coverage  9.47824e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0605  CDS  NC_009483  727272  727514  243  hypothetical protein  YP_001229390  decreased coverage  8.66139e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0686  CDS  NC_009483  817594  818427  834  hypothetical protein  YP_001229471  decreased coverage  5.04074e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0739  CDS  NC_009483  870137  871747  1611  Cna B domain-containing protein  YP_001229522  decreased coverage  0.000604676  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0759  CDS  NC_009483  898593  899246  654  two component LuxR family transcriptional regulator  YP_001229541  decreased coverage  3.56105e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0849  CDS  NC_009483  1007828  1008919  1092  putative transposase  YP_001229629  decreased coverage  2.1207e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0861  CDS  NC_009483  1021153  1022676  1524  hypothetical protein  YP_001229640  decreased coverage  1.62424e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0898  CDS  NC_009483  1063406  1063630  225  CopG/DNA-binding domain-containing protein  YP_001229677  decreased coverage  6.39023e-10  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0900  CDS  NC_009483  1064455  1064769  315  hypothetical protein  YP_001229679  decreased coverage  1.0682e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0950  CDS  NC_009483  1123525  1124490  966  hypothetical protein  YP_001229729  decreased coverage  1.90963e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_0966  CDS  NC_009483  1144550  1147480  2931  peptidase S9B dipeptidylpeptidase IV subunit  YP_001229745  decreased coverage  0.000198927  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1021  CDS  NC_009483  1216200  1218962  2763  RND efflux transporter  YP_001229800  decreased coverage  7.53999e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1048  CDS  NC_009483  1250158  1250892  735  tRNA pseudouridine synthase A  YP_001229827  decreased coverage  7.74285e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1071  CDS  NC_009483  1275822  1276103  282  30S ribosomal protein S19  YP_001229850  decreased coverage  1.20025e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1072  CDS  NC_009483  1276123  1276458  336  50S ribosomal protein L22  YP_001229851  decreased coverage  1.86157e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1108  CDS  NC_009483  1302185  1302478  294  hypothetical protein  YP_001229887  decreased coverage  7.79781e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1146  CDS  NC_009483  1344534  1345100  567  response regulator receiver/ANTAR domain-containing protein  YP_001229923  decreased coverage  3.56105e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1303  CDS  NC_009483  1537395  1537664  270  hypothetical protein  YP_001230077  decreased coverage  1.61444e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1318  CDS  NC_009483  1555055  1555345  291  plasmid stabilization system protein  YP_001230092  decreased coverage  6.83206e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1319  CDS  NC_009483  1555352  1555636  285  prevent-host-death family protein  YP_001230093  decreased coverage  5.82533e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1388  CDS  NC_009483  1631264  1632949  1686  hypothetical protein  YP_001230162  decreased coverage  2.98772e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1433  CDS  NC_009483  1669492  1669812  321  hypothetical protein  YP_001230207  decreased coverage  0.000304955  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1434  CDS  NC_009483  1669898  1670569  672  hypothetical protein  YP_001230208  decreased coverage  0.000122167  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1466  CDS  NC_009483  1698125  1698973  849  hydroxymethylbutenyl pyrophosphate reductase  YP_001230238  decreased coverage  4.5798e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1495  CDS  NC_009483  1741648  1742325  678  serine O-acetyltransferase  YP_001230267  decreased coverage  2.68046e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1571  CDS  NC_009483  1828496  1830274  1779  multi-sensor signal transduction histidine kinase  YP_001230340  decreased coverage  1.1549e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1606  CDS  NC_009483  1868795  1869622  828  protein of unknown function RIO1  YP_001230375  decreased coverage  5.19001e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1614  CDS  NC_009483  1877288  1877662  375  hypothetical protein  YP_001230383  decreased coverage  1.28573e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1628  CDS  NC_009483  1890058  1891368  1311  hypothetical protein  YP_001230396  decreased coverage  9.75742e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1629  CDS  NC_009483  1891365  1892513  1149  hypothetical protein  YP_001230397  decreased coverage  3.79081e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1630  CDS  NC_009483  1892562  1893194  633  hypothetical protein  YP_001230398  decreased coverage  5.24239e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1631  CDS  NC_009483  1893563  1894030  468  bacterioferritin  YP_001230399  decreased coverage  2.61591e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1638  CDS  NC_009483  1902494  1902883  390  hypothetical protein  YP_001230406  decreased coverage  8.46806e-10  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1639  CDS  NC_009483  1902990  1903715  726  hypothetical protein  YP_001230407  decreased coverage  4.99155e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1641  CDS  NC_009483  1905442  1905828  387  response regulator receiver protein  YP_001230409  decreased coverage  1.26042e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1642  CDS  NC_009483  1906005  1906160  156  hypothetical protein  YP_001230410  decreased coverage  3.82297e-10  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1713  CDS  NC_009483  1986798  1988876  2079  metal dependent phosphohydrolase  YP_001230481  decreased coverage  3.61253e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1739  CDS  NC_009483  2022155  2022745  591  isochorismatase hydrolase  YP_001230506  decreased coverage  0.00170664  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1741  CDS  NC_009483  2023099  2024274  1176  hypothetical protein  YP_001230507  decreased coverage  0.0012648  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1747  CDS  NC_009483  2031116  2031310  195  hypothetical protein  YP_001230513  decreased coverage  2.92761e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1780  CDS  NC_009483  2058855  2060144  1290  phosphopyruvate hydratase  YP_001230543  decreased coverage  8.60602e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1789  CDS  NC_009483  2069935  2071176  1242  hypothetical protein  YP_001230552  decreased coverage  8.91935e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1790  CDS  NC_009483  2071287  2071754  468  peptidylprolyl isomerase, FKBP-type  YP_001230553  decreased coverage  1.66077e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1803  CDS  NC_009483  2089186  2089968  783  hypothetical protein  YP_001230566  decreased coverage  7.6837e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1865  CDS  NC_009483  2165916  2166392  477  transcription elongation factor GreA  YP_001230628  decreased coverage  1.82493e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1871  CDS  NC_009483  2171718  2174726  3009  putative delta-1-pyrroline-5-carboxylate dehydrogenase  YP_001230634  decreased coverage  0.00392052  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1872  CDS  NC_009483  2174913  2175449  537  hypothetical protein  YP_001230635  decreased coverage  3.60622e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1891  CDS  NC_009483  2194799  2195482  684  hydrolase  YP_001230654  decreased coverage  7.08914e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1892  CDS  NC_009483  2195535  2196917  1383  threonine synthase  YP_001230655  decreased coverage  1.35451e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1912  CDS  NC_009483  2215332  2216180  849  patatin  YP_001230675  decreased coverage  1.88558e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1917  CDS  NC_009483  2220209  2222635  2427  ATP-dependent protease La  YP_001230680  decreased coverage  1.56821e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1918  CDS  NC_009483  2222740  2223015  276  histone family protein DNA-binding protein  YP_001230681  decreased coverage  8.97645e-10  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1974  CDS  NC_009483  2284443  2285759  1317  DEAD/DEAH box helicase domain-containing protein  YP_001230737  decreased coverage  5.65888e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1985  CDS  NC_009483  2298117  2299790  1674  Sel1 domain-containing protein  YP_001230748  decreased coverage  2.85463e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1998  CDS  NC_009483  2316872  2317390  519  Sel1 domain-containing protein  YP_001230761  decreased coverage  2.69346e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_1999  CDS  NC_009483  2317422  2317748  327  hypothetical protein  YP_001230762  decreased coverage  1.29843e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2089  CDS  NC_009483  2444604  2445776  1173  hypothetical protein  YP_001230852  decreased coverage  0.000268475  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2113  CDS  NC_009483  2467074  2469035  1962  hypothetical protein  YP_001230874  decreased coverage  2.21483e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2133  CDS  NC_009483  2490625  2491929  1305  phenylacetate--CoA ligase  YP_001230894  decreased coverage  0.00349267  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2135  CDS  NC_009483  2492571  2494322  1752  thiamine pyrophosphate binding domain-containing protein  YP_001230896  decreased coverage  0.00067173  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2140  CDS  NC_009483  2498208  2498636  429  hypothetical protein  YP_001230901  decreased coverage  0.000319999  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2154  CDS  NC_009483  2510133  2510753  621  phosphoribosylglycinamide formyltransferase  YP_001230915  decreased coverage  4.63189e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2155  CDS  NC_009483  2510783  2511226  444  TPR repeat-containing protein  YP_001230916  decreased coverage  1.55032e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2241  CDS  NC_009483  2600480  2601049  570  MucR family transcriptional regulator  YP_001230997  decreased coverage  4.75717e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2251  CDS  NC_009483  2611457  2612137  681  peptidase M50  YP_001231007  decreased coverage  6.94823e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2280  CDS  NC_009483  2639706  2640059  354  membrane protein of unknown function  YP_001231033  decreased coverage  1.12149e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2281  CDS  NC_009483  2640403  2643078  2676  PAS/PAC sensor signal transduction histidine kinase  YP_001231034  decreased coverage  0.00177504  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2302  CDS  NC_009483  2664290  2665264  975  NAD-dependent epimerase/dehydratase  YP_001231054  decreased coverage  0.00284498  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2309  CDS  NC_009483  2671044  2671871  828  dimethyladenosine transferase  YP_001231061  decreased coverage  2.65248e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2331  CDS  NC_009483  2697624  2698574  951  hypothetical protein  YP_001231083  decreased coverage  1.68007e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2332  CDS  NC_009483  2698634  2699458  825  hypothetical protein  YP_001231084  decreased coverage  1.03614e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2409  CDS  NC_009483  2790789  2791616  828  molybdopterin binding domain-containing protein  YP_001231161  decreased coverage  9.22318e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2410  CDS  NC_009483  2791810  2792088  279  hypothetical protein  YP_001231162  decreased coverage  7.75976e-10  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2426  CDS  NC_009483  2810407  2812365  1959  TonB-dependent receptor, plug  YP_001231178  decreased coverage  1.64352e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2449  CDS  NC_009483  2833679  2833948  270  alkylhydroperoxidase  YP_001231201  decreased coverage  0.00215332  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2450  CDS  NC_009483  2834172  2835581  1410  GntR family transcriptional regulator  YP_001231202  decreased coverage  0.00121397  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2479  CDS  NC_009483  2865152  2865877  726  hypothetical protein  YP_001231230  decreased coverage  6.81174e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2486  CDS  NC_009483  2875646  2876242  597  lytic transglycosylase, catalytic  YP_001231237  decreased coverage  4.27479e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2487  CDS  NC_009483  2876440  2878035  1596  L-aspartate oxidase  YP_001231238  decreased coverage  8.14089e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2506  CDS  NC_009483  2893730  2894686  957  acetyl-CoA carboxylase carboxyltransferase subunit alpha  YP_001231257  decreased coverage  2.07961e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2556  CDS  NC_009483  2960683  2961360  678  two component transcriptional regulator  YP_001231307  decreased coverage  4.4969e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2564  CDS  NC_009483  2968498  2969001  504  putative phosphohistidine phosphatase, SixA  YP_001231315  decreased coverage  2.28315e-09  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2617  CDS  NC_009483  3042895  3043905  1011  RpoD family RNA polymerase sigma factor  YP_001231367  decreased coverage  6.23193e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2618  CDS  NC_009483  3043987  3044640  654  protein-L-isoaspartate O-methyltransferase  YP_001231368  decreased coverage  7.59722e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2628  CDS  NC_009483  3052467  3054404  1938  threonyl-tRNA synthetase  YP_001231378  decreased coverage  2.55721e-06  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2687  CDS  NC_009483  3121607  3122443  837  Sec-independent protein translocase, TatC subunit  YP_001231434  decreased coverage  4.98053e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2688  CDS  NC_009483  3122633  3123685  1053  response regulator receiver modulated CheB methylesterase  YP_001231435  decreased coverage  1.12566e-07  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2744  CDS  NC_009483  3186995  3187423  429  response regulator receiver protein  YP_001231491  decreased coverage  1.11314e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2799  CDS  NC_009483  3259992  3261050  1059  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  YP_001231545  decreased coverage  0.000330305  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2846  CDS  NC_009483  3306942  3307544  603  flavin reductase domain-containing protein  YP_001231592  decreased coverage  5.00824e-05  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2892  CDS  NC_009483  3355595  3356230  636  hypothetical protein  YP_001231637  decreased coverage  7.01154e-08  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
Gura_2905  CDS  NC_009483  3368056  3370404  2349  putative GAF sensor protein  YP_001231650  decreased coverage  0.000121326  n/a    Geobacter uraniireducens Rf4  Bacteria 
 
 
-
 
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