80 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mflv_0067  CDS  NC_009338  60036  61403  1368  glutamyl-tRNA reductase  YP_001131351  decreased coverage  0.00785406  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0261  CDS  NC_009338  247534  247956  423  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  YP_001131543  decreased coverage  0.00900094  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0287  CDS  NC_009338  280589  281335  747  hypothetical protein  YP_001131569  decreased coverage  4.1503e-05  normal  0.144658  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0288  CDS  NC_009338  281338  282672  1335  cytochrome P450  YP_001131570  decreased coverage  8.66708e-05  normal  0.107645  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0293  CDS  NC_009338  289390  290574  1185  filamentation induced by cAMP protein Fic  YP_001131575  normal  0.970284  decreased coverage  0.0093527  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0374  CDS  NC_009338  375855  376367  513  hypothetical protein  YP_001131656  normal  decreased coverage  0.00610442  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0378  CDS  NC_009338  378930  379826  897  urea amidolyase related protein  YP_001131660  normal  decreased coverage  0.00676966  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0379  CDS  NC_009338  379860  380402  543  GCN5-related N-acetyltransferase  YP_001131661  normal  decreased coverage  0.00623956  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0380  CDS  NC_009338  380523  381665  1143  bifunctional uroporphyrinogen-III synthetase/response regulator domain protein  YP_001131662  normal  decreased coverage  0.00848915  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0381  CDS  NC_009338  381662  382420  759  cobalamin (vitamin B12) biosynthesis CbiX protein  YP_001131663  normal  decreased coverage  0.00853901  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0466  CDS  NC_009338  491397  492641  1245  glycosyl transferase family protein  YP_001131748  decreased coverage  0.00234533  normal  0.19115  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0857  CDS  NC_009338  891479  892210  732  ABC transporter related  YP_001132129  normal  decreased coverage  0.00848915  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_0859  CDS  NC_009338  894029  894682  654  regulatory protein GntR, HTH  YP_001132131  normal  0.774142  decreased coverage  0.0091053  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1138  CDS  NC_009338  1181821  1182162  342  rhodanese domain-containing protein  YP_001132408  decreased coverage  7.73759e-05  normal  0.329269  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1139  CDS  NC_009338  1182177  1183172  996  hypothetical protein  YP_001132409  decreased coverage  0.00064964  normal  0.257581  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1243  CDS  NC_009338  1295458  1296738  1281  aminotransferase class-III  YP_001132513  decreased coverage  2.10523e-06  hitchhiker  1.2077e-05  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1244  CDS  NC_009338  1296944  1298485  1542  amino acid permease-associated region  YP_001132514  decreased coverage  6.42825e-07  decreased coverage  2.88489e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1245  CDS  NC_009338  1298499  1300739  2241  glycerol dehydratase  YP_001132515  hitchhiker  0.00307379  decreased coverage  4.39875e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1246  CDS  NC_009338  1300736  1301065  330  propanediol utilization: dehydratase, small subunit  YP_001132516  hitchhiker  0.00266444  decreased coverage  1.53373e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1247  CDS  NC_009338  1301062  1302765  1704  hypothetical protein  YP_001132517  normal  0.123893  decreased coverage  2.93359e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1248  CDS  NC_009338  1302746  1303393  648  hypothetical protein  YP_001132518  normal  0.0560994  decreased coverage  1.50811e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1249  CDS  NC_009338  1303528  1303833  306  hypothetical protein  YP_001132519  normal  0.0446071  decreased coverage  1.16399e-06  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1390  CDS  NC_009338  1444822  1445904  1083  hypothetical protein  YP_001132660  decreased coverage  0.000159415  normal  0.519221  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1549  CDS  NC_009338  1619637  1621175  1539  acyl-CoA synthetase  YP_001132819  decreased coverage  0.00257603  normal  0.272175  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1652  CDS  NC_009338  1719665  1720024  360  regulatory protein, ArsR  YP_001132922  decreased coverage  0.000800297  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_1653  CDS  NC_009338  1720123  1720605  483  glyoxalase/bleomycin resistance protein/dioxygenase  YP_001132923  decreased coverage  0.00264078  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2045  CDS  NC_009338  2124276  2124779  504  RDD domain-containing protein  YP_001133311  decreased coverage  0.000733999  normal  0.318359  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2079  CDS  NC_009338  2156470  2157471  1002  4-hydroxy-3-methylbut-2-enyl diphosphate reductase  YP_001133345  decreased coverage  0.00954639  normal  0.119575  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2145  CDS  NC_009338  2220777  2221205  429  hypothetical protein  YP_001133411  decreased coverage  0.0019685  normal  0.0895545  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2147  CDS  NC_009338  2221769  2222353  585  HhH-GPD family protein  YP_001133413  decreased coverage  0.00539859  normal  0.0545007  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2148  CDS  NC_009338  2222396  2222791  396  resolvase domain-containing protein  YP_001133414  decreased coverage  0.00363321  normal  0.0540104  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2155  CDS  NC_009338  2227626  2228882  1257  major facilitator transporter  YP_001133421  normal  0.178269  decreased coverage  0.00520105  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2184  CDS  NC_009338  2263493  2264056  564  hypothetical protein  YP_001133450  decreased coverage  0.000227609  normal  0.582537  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2266  CDS  NC_009338  2354814  2355563  750  two component transcriptional regulator  YP_001133532  decreased coverage  0.00896474  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2415  CDS  NC_009338  2516575  2517396  822  short-chain dehydrogenase/reductase SDR  YP_001133680  decreased coverage  0.00507131  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2416  CDS  NC_009338  2517396  2518139  744  TetR family transcriptional regulator  YP_001133681  decreased coverage  0.00485209  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_2885  CDS  NC_009338  3052549  3054258  1710  amidohydrolase 3  YP_001134150  decreased coverage  0.00571861  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3073  CDS  NC_009338  3252637  3253083  447  BadM/Rrf2 family transcriptional regulator  YP_001134338  decreased coverage  0.00965194  normal  0.580811  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3118  CDS  NC_009338  3304363  3305151  789  dolichyl-phosphate beta-D-mannosyltransferase  YP_001134383  decreased coverage  0.00360955  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3119  CDS  NC_009338  3305237  3305572  336  hypothetical protein  YP_001134384  decreased coverage  0.002605  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3120  CDS  NC_009338  3305812  3306093  282  hypothetical protein  YP_001134385  decreased coverage  0.00460635  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3214  CDS  NC_009338  3411779  3412420  642  alkylmercury lyase  YP_001134479  decreased coverage  0.00854121  normal  0.424714  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3298  CDS  NC_009338  3484622  3485413  792  ErfK/YbiS/YcfS/YnhG family protein  YP_001134563  decreased coverage  0.0078311  normal  0.0928852  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3420  CDS  NC_009338  3636785  3638029  1245  major facilitator transporter  YP_001134684  decreased coverage  0.00336809  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3844  CDS  NC_009338  4106080  4107807  1728  GAF sensor signal transduction histidine kinase  YP_001135104  decreased coverage  0.00743108  normal  0.0464921  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3847  CDS  NC_009338  4109754  4110404  651  two component LuxR family transcriptional regulator  YP_001135107  normal  0.118356  decreased coverage  0.00872558  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3848  CDS  NC_009338  4110423  4111412  990  hypothetical protein  YP_001135108  normal  0.572013  decreased coverage  0.00997799  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_3924  CDS  NC_009338  4185517  4186860  1344  pH-dependent sodium/proton antiporter  YP_001135183  decreased coverage  0.00452006  normal  0.998293  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4009  CDS  NC_009338  4263813  4264733  921  HpcH/HpaI aldolase  YP_001135267  normal  0.783796  decreased coverage  0.00557053  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4010  CDS  NC_009338  4264727  4265188  462  hypothetical protein  YP_001135268  normal  0.462572  decreased coverage  0.00523141  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4011  CDS  NC_009338  4265201  4265656  456  hypothetical protein  YP_001135269  normal  0.628439  decreased coverage  0.00529167  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4012  CDS  NC_009338  4265653  4266120  468  TPR repeat-containing protein  YP_001135270  normal  0.678483  decreased coverage  0.00532252  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4013  CDS  NC_009338  4266117  4266854  738  dihydrodipicolinate reductase  YP_001135271  normal  0.944692  decreased coverage  0.00563446  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4014  CDS  NC_009338  4266951  4268345  1395  hypothetical protein  YP_001135272  normal  decreased coverage  0.00728967  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4015  CDS  NC_009338  4268363  4268746  384  hypothetical protein  YP_001135273  normal  decreased coverage  0.00496862  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4016  CDS  NC_009338  4268750  4269265  516  AsnC family transcriptional regulator  YP_001135274  normal  decreased coverage  0.0056672  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4042  CDS  NC_009338  4294682  4295218  537  hypothetical protein  YP_001135300  decreased coverage  0.0029117  normal  0.607114  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4043  CDS  NC_009338  4295386  4295910  525  hypothetical protein  YP_001135301  decreased coverage  0.00936615  normal  0.611794  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4105  CDS  NC_009338  4357072  4357836  765  HpcH/HpaI aldolase  YP_001135363  decreased coverage  0.00950461  normal  0.23026  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4474  CDS  NC_009338  4759382  4762315  2934  regulatory protein, LuxR  YP_001135731  normal  decreased coverage  0.0017385  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4475  CDS  NC_009338  4762497  4764161  1665  GMC oxidoreductase  YP_001135732  normal  decreased coverage  0.00299763  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4479  CDS  NC_009338  4766174  4768771  2598  regulatory protein, LuxR  YP_001135736  normal  decreased coverage  0.00441631  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4480  CDS  NC_009338  4769027  4769437  411  response regulator receiver protein  YP_001135737  normal  decreased coverage  0.00179886  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4481  CDS  NC_009338  4769613  4769987  375  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3  YP_001135738  normal  decreased coverage  0.00182134  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4482  CDS  NC_009338  4769978  4770532  555  NADH dehydrogenase subunit B  YP_001135739  normal  decreased coverage  0.00198426  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4483  CDS  NC_009338  4770529  4771209  681  NADH dehydrogenase subunit C  YP_001135740  normal  decreased coverage  0.00208368  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4484  CDS  NC_009338  4771209  4772564  1356  NADH dehydrogenase subunit D  YP_001135741  normal  decreased coverage  0.00259323  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4534  CDS  NC_009338  4828553  4829752  1200  virulence factor Mce family protein  YP_001135790  decreased coverage  7.69864e-05  normal  0.186116  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4564  CDS  NC_009338  4859155  4860726  1572  hypothetical protein  YP_001135820  decreased coverage  0.00360175  normal  0.224392  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4701  CDS  NC_009338  5007299  5008156  858  hypothetical protein  YP_001135957  normal  0.44507  decreased coverage  0.00228171  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4702  CDS  NC_009338  5008149  5009900  1752  choline/carnitine/betaine transporter  YP_001135958  normal  0.911193  decreased coverage  0.0031512  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4703  CDS  NC_009338  5009961  5011370  1410  hypothetical protein  YP_001135959  normal  decreased coverage  0.00272283  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4812  CDS  NC_009338  5123565  5124488  924  hypothetical protein  YP_001136068  normal  decreased coverage  0.00673201  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_4883  CDS  NC_009338  5204131  5204694  564  TetR family transcriptional regulator  YP_001136137  normal  decreased coverage  0.00152311  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5031  CDS  NC_009338  5353744  5354154  411  50S ribosomal protein L18  YP_001136285  decreased coverage  6.97313e-06  normal  0.548641  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5032  CDS  NC_009338  5354158  5354697  540  50S ribosomal protein L6  YP_001136286  decreased coverage  3.33726e-06  normal  0.564685  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5235  CDS  NC_009338  5581261  5581935  675  hypothetical protein  YP_001136487  decreased coverage  0.00643586  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5236  CDS  NC_009338  5581968  5582537  570  CsbD family protein  YP_001136488  decreased coverage  0.00387932  normal  Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5576  CDS  NC_009340  993  2375  1383  hypothetical protein  YP_001136825  decreased coverage  1.30078e-08  n/a    Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
-
 
Mflv_5612  CDS  NC_009341  13987  15339  1353  hypothetical protein  YP_001136861  decreased coverage  5.86229e-07  n/a    Mycobacterium gilvum PYR-GCK  Bacteria 
 
 
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