77 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
YpsIP31758_0021  CDS  NC_009708  22666  25464  2799  DNA polymerase I  YP_001399022  decreased coverage  0.00121039  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0061  CDS  NC_009708  68215  68883  669  DNA repair protein RadC  YP_001399062  decreased coverage  8.03057e-08  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0386  CDS  NC_009708  444762  445727  966  tRNA-dihydrouridine synthase B  YP_001399379  decreased coverage  8.79086e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0459  CDS  NC_009708  534047  534475  429  50S ribosomal protein L13  YP_001399452  decreased coverage  1.27467e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0461  CDS  NC_009708  534490  534882  393  30S ribosomal protein S9  YP_001399453  decreased coverage  1.40237e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0524  CDS  NC_009708  618288  619667  1380  hypothetical protein  YP_001399517  decreased coverage  0.00628478  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_0858  CDS  NC_009708  1037455  1037784  330  Z-ring-associated protein  YP_001399842  decreased coverage  2.48615e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1020  CDS  NC_009708  1222308  1223663  1356  zinc metallopeptidase RseP  YP_001400004  decreased coverage  7.3944e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1044  CDS  NC_009708  1246802  1247368  567  D,D-heptose 1,7-bisphosphate phosphatase  YP_001400028  decreased coverage  9.52997e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_1068  CDS  NC_009708  1273190  1273639  450  hypothetical protein  YP_001400049  decreased coverage  0.000789019  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1069  CDS  NC_009708  1273804  1274142  339  hypothetical protein  YP_001400050  decreased coverage  0.000610777  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1115  CDS  NC_009708  1317688  1318344  657  hypothetical protein  YP_001400096  decreased coverage  1.90238e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1116  CDS  NC_009708  1318338  1319288  951  biotin-dependent carboxylase domain-containing protein  YP_001400097  decreased coverage  3.09284e-12  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1134  CDS  NC_009708  1334507  1336306  1800  GTP-binding protein LepA  YP_001400115  decreased coverage  4.78112e-05  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1194  CDS  NC_009708  1406296  1407759  1464  inosine 5'-monophosphate dehydrogenase  YP_001400175  decreased coverage  1.11233e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1237  CDS  NC_009708  1459591  1460310  720  DNA replication initiation factor  YP_001400218  decreased coverage  3.22124e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1411  CDS  NC_009708  1650567  1651790  1224  3-oxoacyl-(acyl carrier protein) synthase I  YP_001400390  decreased coverage  3.4397e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1434  CDS  NC_009708  1674608  1675159  552  phosphodiesterase  YP_001400413  decreased coverage  4.39444e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1598  CDS  NC_009708  1854481  1857927  3447  transcription-repair coupling factor  YP_001400575  decreased coverage  1.29728e-07  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1671  CDS  NC_009708  1941191  1941904  714  putative solute/DNA competence effector  YP_001400648  decreased coverage  2.4891e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_1712  CDS  NC_009708  1980969  1982897  1929  threonyl-tRNA synthetase  YP_001400689  decreased coverage  7.03633e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1872  CDS  NC_009708  2168751  2169686  936  DNA replication terminus site-binding protein  YP_001400847  decreased coverage  0.00638426  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1901  CDS  NC_009708  2203822  2204463  642  endonuclease III  YP_001400876  decreased coverage  1.83349e-05  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1902  CDS  NC_009708  2204646  2205644  999  NAD dependent epimerase/dehydratase family protein  YP_001400877  decreased coverage  7.45281e-05  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1915  CDS  NC_009708  2217306  2218475  1170  tetratricopeptide repeat protein  YP_001400890  decreased coverage  4.81977e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1989  CDS  NC_009708  2289346  2290221  876  aldose 1-epimerase  YP_001400962  decreased coverage  2.39018e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_1990  CDS  NC_009708  2290294  2291064  771  MltA-interacting protein  YP_001400963  decreased coverage  1.89285e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2014  CDS  NC_009708  2318282  2319970  1689  long-chain-fatty-acid--CoA ligase  YP_001400987  decreased coverage  2.77435e-09  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2027  CDS  NC_009708  2334350  2335306  957  high-affinity zinc transporter periplasmic component  YP_001401000  decreased coverage  1.30529e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2028  CDS  NC_009708  2335379  2336140  762  high-affinity zinc transporter ATPase  YP_001401001  decreased coverage  4.63637e-11  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2029  CDS  NC_009708  2336137  2336922  786  high-affinity zinc transporter membrane component  YP_001401002  decreased coverage  7.22551e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2086  CDS  NC_009708  2396362  2396784  423  carboxymuconolactone decarboxylase family protein  YP_001401059  decreased coverage  6.41307e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2167  CDS  NC_009708  2493291  2494031  741  pili assembly chaperone  YP_001401140  decreased coverage  0.000797941  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2168  CDS  NC_009708  2494474  2494698  225  hypothetical protein  YP_001401141  decreased coverage  0.000393075  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2226  CDS  NC_009708  2540715  2540954  240  bifunctional antitoxin/transcriptional repressor RelB  YP_001401195  decreased coverage  0.0088475  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2393  CDS  NC_009708  2693473  2694489  1017  LacI family sugar-binding transcriptional regulator  YP_001401362  decreased coverage  7.93999e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2558  CDS  NC_009708  2897838  2899238  1401  asparaginyl-tRNA synthetase  YP_001401523  decreased coverage  1.21156e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2581  CDS  NC_009708  2927051  2927743  693  cytidylate kinase  YP_001401546  decreased coverage  5.68011e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2683  CDS  NC_009708  3038448  3039581  1134  bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein  YP_001401648  decreased coverage  8.35895e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_2719  CDS  NC_009708  3073674  3075431  1758  putative helicase  YP_001401684  decreased coverage  0.00330465  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3033  CDS  NC_009708  3413089  3414303  1215  fosmidomycin resistance protein  YP_001401993  decreased coverage  0.00068897  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3124  CDS  NC_009708  3514713  3515783  1071  S-adenosylmethionine:tRNA ribosyltransferase-isomerase  YP_001402084  decreased coverage  0.00113857  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3319  CDS  NC_009708  3729098  3731332  2235  GDP/GTP pyrophosphokinase  YP_001402276  decreased coverage  2.6158e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3358  CDS  NC_009708  3772752  3773111  360  hypothetical protein  YP_001402315  decreased coverage  5.32345e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3381  CDS  NC_009708  3800774  3801694  921  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_001402338  decreased coverage  6.92402e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3382  CDS  NC_009708  3801794  3802945  1152  cell division protein FtsZ  YP_001402339  decreased coverage  1.04455e-08  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3440  CDS  NC_009708  3877481  3878314  834  Dna-J like membrane chaperone protein  YP_001402395  decreased coverage  5.44251e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3466  CDS  NC_009708  3906276  3908186  1911  molecular chaperone DnaK  YP_001402421  decreased coverage  6.2983e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3541  CDS  NC_009708  4000767  4001843  1077  putative permease  YP_001402495  decreased coverage  3.98482e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3597  CDS  NC_009708  4062366  4063853  1488  transcription elongation factor NusA  YP_001402551  decreased coverage  1.79276e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3610  CDS  NC_009708  4076090  4077076  987  integral membrane protein  YP_001402564  decreased coverage  1.95591e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3611  CDS  NC_009708  4077164  4077421  258  50S ribosomal protein L27  YP_001402565  decreased coverage  7.11047e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3612  CDS  NC_009708  4077441  4077752  312  50S ribosomal protein L21  YP_001402566  decreased coverage  5.09393e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3659  CDS  NC_009708  4126442  4126555  114  hypothetical protein  YP_001402614  decreased coverage  7.59221e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3660  CDS  NC_009708  4125224  4126459  1236  iron-sulfur cluster-binding protein  YP_001402613  decreased coverage  2.46681e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3765  CDS  NC_009708  4242884  4244290  1407  replicative DNA helicase  YP_001402719  decreased coverage  2.721e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3786  CDS  NC_009708  4271163  4272200  1038  tellurite resistance protein  YP_001402740  decreased coverage  3.58727e-05  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_3787  CDS  NC_009708  4272222  4272677  456  tellurite resistance protein  YP_001402741  decreased coverage  1.80248e-07  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3892  CDS  NC_009708  4383535  4383924  390  30S ribosomal protein S11  YP_001402840  decreased coverage  1.47745e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3893  CDS  NC_009708  4383941  4384297  357  30S ribosomal protein S13  YP_001402841  decreased coverage  1.23367e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_3966  CDS  NC_009708  4448559  4449080  522  shikimate kinase I  YP_001402914  decreased coverage  1.60057e-17  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4193  rRNA  NC_009708  159777  161319  1543  16S ribosomal RNA    decreased coverage  1.41803e-10  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4199  tRNA  NC_009708  221179  221255  77  tRNA-Arg    decreased coverage  6.81521e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_4235  tRNA  NC_009708  2494338  2494415  78  tRNA-Asn    decreased coverage  0.000287726  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4240  tRNA  NC_009708  2693239  2693316  78  tRNA-Asn    decreased coverage  6.48867e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4244  tRNA  NC_009708  3111104  3111179  76  tRNA-Thr    decreased coverage  1.27626e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4245  tRNA  NC_009708  3111184  3111273  90  tRNA-Ser    decreased coverage  1.23139e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4269  tRNA  NC_009708  3642962  3643040  79  tRNA-Arg    decreased coverage  1.7764e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4270  tRNA  NC_009708  3643096  3643174  79  tRNA-Arg    decreased coverage  1.97355e-16  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4271  tRNA  NC_009708  3643181  3643275  95  tRNA-Ser    decreased coverage  9.70003e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4278  tRNA  NC_009708  4126771  4126846  76  tRNA-Gly    decreased coverage  5.82195e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_4279  tRNA  NC_009708  4126914  4126989  76  tRNA-Gly    decreased coverage  6.42412e-18  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_4304  misc_RNA  NC_009708  1037218  1037399  182  6S / SsrS RNA    decreased coverage  1.54886e-15  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_4306  misc_RNA  NC_009708  1200711  1200817  107  gcvB RNA    decreased coverage  4.6362e-09  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_B0036  CDS  NC_009705  43466  44107  642  hypothetical protein  YP_001393334  decreased coverage  9.51332e-13  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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YpsIP31758_B0037  CDS  NC_009705  44523  45080  558  hypothetical protein  YP_001393335  decreased coverage  6.504e-14  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
-
 
YpsIP31758_B0055  CDS  NC_009705  58563  59291  729  hypothetical protein  YP_001393353  decreased coverage  5.04638e-05  n/a    Yersinia pseudotuberculosis IP 31758  Bacteria 
 
 
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