56 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Amuc_0057  CDS  NC_010655  76349  76885  537  UvrB/UvrC protein  YP_001876684  decreased coverage  0.00323429  normal  0.240627  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0058  CDS  NC_010655  76891  77946  1056  ATP:guanido phosphotransferase  YP_001876685  decreased coverage  0.00335671  normal  0.178856  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0270  CDS  NC_010655  332656  333210  555  Shikimate kinase  YP_001876894  decreased coverage  2.87272e-07  normal  0.701055  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0280  CDS  NC_010655  339969  340853  885  ribonuclease HIII  YP_001876903  decreased coverage  7.20364e-06  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0282  CDS  NC_010655  341610  342113  504  hypothetical protein  YP_001876905  decreased coverage  2.54697e-06  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0307  CDS  NC_010655  363308  363781  474  30S ribosomal protein S7  YP_001876930  decreased coverage  2.18135e-07  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0326  CDS  NC_010655  383783  384898  1116  hypothetical protein  YP_001876947  normal  0.0150032  decreased coverage  6.38047e-07  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0327  CDS  NC_010655  384905  385492  588  hypothetical protein  YP_001876948  decreased coverage  0.00725297  decreased coverage  3.20851e-07  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0328  CDS  NC_010655  385486  387501  2016  hypothetical protein  YP_001876949  decreased coverage  0.00012649  hitchhiker  3.71301e-06  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0386  CDS  NC_010655  462976  464607  1632  hypothetical protein  YP_001877006  decreased coverage  0.00110205  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0436  CDS  NC_010655  520258  521025  768  HAD-superfamily subfamily IB hydrolase, TIGR01490  YP_001877055  decreased coverage  4.08173e-07  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0545  CDS  NC_010655  646473  647093  621  hypothetical protein  YP_001877164  decreased coverage  0.000789801  normal  0.125212  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0717  CDS  NC_010655  845810  847114  1305  amino acid permease-associated region  YP_001877335  decreased coverage  1.67398e-06  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0718  CDS  NC_010655  847267  847932  666  HAD-superfamily hydrolase, subfamily IA, variant 1  YP_001877336  decreased coverage  2.86264e-06  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0824  CDS  NC_010655  969353  973147  3795  glycoside hydrolase family 2 TIM barrel  YP_001877438  unclonable  9.54733e-05  decreased coverage  0.00757756  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0889  CDS  NC_010655  1058478  1059632  1155  efflux transporter, RND family, MFP subunit  YP_001877503  decreased coverage  7.56331e-07  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0925  CDS  NC_010655  1106907  1107134  228  KOW domain protein  YP_001877538  decreased coverage  6.00412e-07  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0926  CDS  NC_010655  1107201  1107782  582  ribosomal protein L5  YP_001877539  decreased coverage  2.08834e-06  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_0970  CDS  NC_010655  1157874  1160171  2298  SSS sodium solute transporter superfamily  YP_001877583  decreased coverage  0.000363528  normal  0.258421  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1046  CDS  NC_010655  1248961  1249530  570  NusG antitermination factor  YP_001877653  decreased coverage  1.49181e-07  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1047  CDS  NC_010655  1249560  1249787  228  preprotein translocase, SecE subunit  YP_001877654  decreased coverage  5.68369e-08  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1085  CDS  NC_010655  1296592  1297809  1218  Carbohydrate-selective porin OprB  YP_001877692  unclonable  1.16954e-07  decreased coverage  8.02155e-19  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1095  CDS  NC_010655  1306359  1308284  1926  heavy metal translocating P-type ATPase  YP_001877702  decreased coverage  1.23465e-05  hitchhiker  1.22053e-07  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1096  CDS  NC_010655  1308450  1309874  1425  transcription termination factor Rho  YP_001877703  decreased coverage  2.20234e-06  hitchhiker  1.28314e-05  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1147  CDS  NC_010655  1375379  1376257  879  hypothetical protein  YP_001877754  normal  0.409203  decreased coverage  1.75606e-05  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1148  CDS  NC_010655  1376515  1376718  204  hypothetical protein  YP_001877755  normal  0.380994  decreased coverage  9.95372e-06  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1189  CDS  NC_010655  1425427  1425690  264  50S ribosomal protein L28  YP_001877795  decreased coverage  4.38944e-08  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1234  CDS  NC_010655  1483238  1483666  429  ribosomal protein L13  YP_001877840  decreased coverage  0.00635155  normal  0.252185  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1352  CDS  NC_010655  1625276  1626028  753  hypothetical protein  YP_001877957  decreased coverage  0.000463404  hitchhiker  2.62795e-09  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1396  CDS  NC_010655  1667480  1669273  1794  aspartyl-tRNA synthetase  YP_001878001  decreased coverage  0.000259545  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1411  CDS  NC_010655  1688582  1689256  675  hypothetical protein  YP_001878015  decreased coverage  2.37297e-05  normal  0.940904  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1516  CDS  NC_010655  1810066  1811703  1638  putative PAS/PAC sensor protein  YP_001878118  hitchhiker  0.00955123  decreased coverage  2.36227e-09  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1517  CDS  NC_010655  1811834  1812520  687  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_001878119  hitchhiker  0.000360016  decreased coverage  6.80487e-10  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1519  CDS  NC_010655  1814271  1817507  3237  helicase domain protein  YP_001878121  decreased coverage  0.00298818  hitchhiker  1.96773e-06  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1520  CDS  NC_010655  1817510  1818112  603  hypothetical protein  YP_001878122  decreased coverage  3.78207e-06  hitchhiker  8.06607e-06  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1686  CDS  NC_010655  2048214  2050556  2343  Beta-galactosidase  YP_001878285  decreased coverage  0.00233252  normal  0.321684  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1794  CDS  NC_010655  2181989  2182795  807  peptidase S24 and S26 domain protein  YP_001878393  normal  0.854647  decreased coverage  0.00408927  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1795  CDS  NC_010655  2182897  2183223  327  hypothetical protein  YP_001878394  normal  0.352874  decreased coverage  0.00302013  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1797  CDS  NC_010655  2184205  2185077  873  hypothetical protein  YP_001878396  normal  0.227958  decreased coverage  0.00253593  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1798  CDS  NC_010655  2185074  2186279  1206  aminotransferase class I and II  YP_001878397  normal  0.231865  decreased coverage  0.00490187  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1829  CDS  NC_010655  2222637  2223452  816  class II aldolase/adducin family protein  YP_001878428  decreased coverage  0.00738652  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1917  CDS  NC_010655  2327545  2328507  963  PfkB domain protein  YP_001878511  normal  decreased coverage  0.000761128  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1918  CDS  NC_010655  2328690  2330006  1317  bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase  YP_001878512  normal  decreased coverage  0.000565023  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1921  CDS  NC_010655  2331792  2333681  1890  apolipoprotein N-acyltransferase  YP_001878515  normal  decreased coverage  0.0008443  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1922  CDS  NC_010655  2333819  2334052  234  putative ferredoxin  YP_001878516  normal  0.871908  decreased coverage  0.000431531  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1924  CDS  NC_010655  2334650  2336644  1995  Beta-N-acetylhexosaminidase  YP_001878518  normal  0.234624  decreased coverage  0.00104389  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1925  CDS  NC_010655  2336696  2337652  957  hypothetical protein  YP_001878519  normal  0.401553  decreased coverage  0.000801317  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1970  CDS  NC_010655  2389617  2393159  3543  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  YP_001878564  normal  0.23883  decreased coverage  0.000751585  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2015  CDS  NC_010655  2447996  2448610  615  thiamine-phosphate pyrophosphorylase  YP_001878606  decreased coverage  0.0030252  normal  0.0171267  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2034  CDS  NC_010655  2469820  2471343  1524  Methylmalonyl-CoA carboxytransferase  YP_001878625  hitchhiker  0.00118828  decreased coverage  7.27606e-07  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2035  CDS  NC_010655  2471413  2472168  756  hypothetical protein  YP_001878626  hitchhiker  0.000129798  decreased coverage  3.70745e-07  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2036  CDS  NC_010655  2472372  2473766  1395  MATE efflux family protein  YP_001878627  hitchhiker  2.88761e-05  decreased coverage  4.85587e-08  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2155  CDS  NC_010655  2627640  2628326  687  hypothetical protein  YP_001878744  normal  0.541096  decreased coverage  0.00429622  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2157  CDS  NC_010655  2629441  2630022  582  NADH dehydrogenase subunit B  YP_001878745  normal  decreased coverage  0.00451511  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_R0006  tRNA  NC_010655  96989  97074  86  tRNA-Leu    decreased coverage  5.31495e-08  normal  0.328026  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_R0033  tRNA  NC_010655  1249821  1249896  76  tRNA-Trp    decreased coverage  3.98886e-08  normal  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>