108 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dred_0001  CDS  NC_009253  365  1690  1326  chromosomal replication initiation protein  YP_001111378  decreased coverage  0.000247534  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0014  CDS  NC_009253  21449  23029  1581  D-3-phosphoglycerate dehydrogenase  YP_001111391  decreased coverage  0.00744014  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0029  CDS  NC_009253  38097  38462  366  hypothetical protein  YP_001111404  decreased coverage  4.35584e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0042  CDS  NC_009253  52517  54139  1623  DNA polymerase III, subunits gamma and tau  YP_001111417  decreased coverage  0.000215305  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0064  CDS  NC_009253  71256  71516  261  AbrB family transcriptional regulator  YP_001111439  decreased coverage  4.48918e-08  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0077  CDS  NC_009253  83197  84078  882  dimethyladenosine transferase  YP_001111452  decreased coverage  3.77526e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0128  CDS  NC_009253  134678  135067  390  hypothetical protein  YP_001111503  decreased coverage  2.27024e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0129  CDS  NC_009253  135083  136786  1704  formate--tetrahydrofolate ligase  YP_001111504  decreased coverage  1.26752e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0170  CDS  NC_009253  178120  178776  657  nitrite and sulphite reductase 4Fe-4S region  YP_001111544  decreased coverage  5.62275e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0175  CDS  NC_009253  182675  184207  1533  lysyl-tRNA synthetase  YP_001111549  decreased coverage  1.27982e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0209  CDS  NC_009253  227137  227388  252  ribosomal protein L7ae family protein  YP_001111583  decreased coverage  3.43834e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0215  CDS  NC_009253  232169  232798  630  50S ribosomal protein L3  YP_001111589  decreased coverage  3.70606e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0229  CDS  NC_009253  238516  238914  399  30S ribosomal protein S8  YP_001111603  decreased coverage  7.64714e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0293  CDS  NC_009253  305059  306063  1005  YbbR family protein  YP_001111667  decreased coverage  1.88911e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0294  CDS  NC_009253  306235  307569  1335  phosphoglucosamine mutase  YP_001111668  decreased coverage  8.94137e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0307  CDS  NC_009253  322287  322688  402  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  YP_001111680  decreased coverage  5.21553e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0308  CDS  NC_009253  322805  323239  435  MarR family transcriptional regulator  YP_001111681  decreased coverage  0.000768175  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0347  CDS  NC_009253  363990  366413  2424  3-hydroxyacyl-CoA dehydrogenase, NAD-binding  YP_001111720  decreased coverage  0.0028421  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0348  CDS  NC_009253  366426  367604  1179  acetyl-CoA acetyltransferase  YP_001111721  decreased coverage  0.000894654  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0480  CDS  NC_009253  522903  524072  1170  hypothetical protein  YP_001111851  decreased coverage  2.08075e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0683  CDS  NC_009253  736912  737889  978  cell division protein FtsA  YP_001112047  decreased coverage  0.000240724  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0684  CDS  NC_009253  737934  738986  1053  cell division protein FtsZ  YP_001112048  decreased coverage  7.45989e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0718  CDS  NC_009253  770239  773034  2796  isoleucyl-tRNA synthetase  YP_001112082  decreased coverage  0.00194665  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0732  CDS  NC_009253  786786  787304  519  adenine phosphoribosyltransferase  YP_001112096  decreased coverage  1.71863e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_0756  CDS  NC_009253  808283  809542  1260  histidyl-tRNA synthetase  YP_001112119  decreased coverage  0.000330653  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1091  CDS  NC_009253  1163335  1164171  837  hypothetical protein  YP_001112451  decreased coverage  0.000523541  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1092  CDS  NC_009253  1164302  1165435  1134  peptidase T-like protein  YP_001112452  decreased coverage  0.00341854  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1131  CDS  NC_009253  1203299  1206022  2724  polynucleotide adenylyltransferase region  YP_001112490  decreased coverage  0.00727527  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1148  CDS  NC_009253  1218445  1219632  1188  aspartate aminotransferase  YP_001112507  decreased coverage  0.000148908  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1158  CDS  NC_009253  1229861  1230025  165  hypothetical protein  YP_001112517  decreased coverage  0.000321768  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1166  CDS  NC_009253  1238861  1239766  906  homoserine kinase  YP_001112525  decreased coverage  1.88911e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1167  CDS  NC_009253  1239816  1241054  1239  aspartate kinase  YP_001112526  decreased coverage  8.35866e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1181  CDS  NC_009253  1256453  1258318  1866  methyl-accepting chemotaxis sensory transducer  YP_001112540  decreased coverage  0.00022904  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1198  CDS  NC_009253  1275423  1276787  1365  SNF2-related protein  YP_001112557  decreased coverage  5.24568e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1207  CDS  NC_009253  1285157  1286149  993  hypothetical protein  YP_001112566  decreased coverage  8.00275e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1229  CDS  NC_009253  1306171  1306647  477  hypothetical protein  YP_001112588  decreased coverage  1.17689e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1333  CDS  NC_009253  1430049  1431449  1401  Na+/solute symporter  YP_001112692  decreased coverage  0.000174463  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1343  CDS  NC_009253  1437011  1437895  885  Hsp33 protein  YP_001112702  decreased coverage  5.73361e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1351  CDS  NC_009253  1447070  1448353  1284  transposase IS116/IS110/IS902 family protein  YP_001112710  decreased coverage  7.96647e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1413  CDS  NC_009253  1528564  1529535  972  peptidoglycan-binding LysM  YP_001112768  decreased coverage  0.00299984  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1427  CDS  NC_009253  1547723  1549009  1287  hypothetical protein  YP_001112782  decreased coverage  4.25148e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1527  CDS  NC_009253  1657020  1659371  2352  heavy metal translocating P-type ATPase  YP_001112881  decreased coverage  0.00585098  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1528  CDS  NC_009253  1659419  1659781  363  regulatory protein, ArsR  YP_001112882  decreased coverage  3.097e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1583  CDS  NC_009253  1722035  1723468  1434  glucose-inhibited division protein A  YP_001112936  decreased coverage  8.27555e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1639  CDS  NC_009253  1786873  1788261  1389  cytochrome bd ubiquinol oxidase, subunit I  YP_001112992  decreased coverage  4.61914e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1647  CDS  NC_009253  1801389  1802612  1224  tyrosyl-tRNA synthetase  YP_001113000  decreased coverage  0.00531566  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1669  CDS  NC_009253  1824592  1825833  1242  preprotein translocase subunit SecD  YP_001113022  decreased coverage  2.93049e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1685  CDS  NC_009253  1841485  1842273  789  oxidoreductase FAD/NAD(P)-binding subunit  YP_001113037  decreased coverage  4.69959e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1736  CDS  NC_009253  1897624  1898547  924  thioredoxin reductase  YP_001113086  decreased coverage  1.41023e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1769  CDS  NC_009253  1936118  1936522  405  cobalamin B12-binding domain-containing protein  YP_001113119  decreased coverage  0.00734137  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1807  CDS  NC_009253  1981045  1981842  798  hypothetical protein  YP_001113157  decreased coverage  0.00162766  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1818  CDS  NC_009253  1995396  1996277  882  peptidase M50  YP_001113168  decreased coverage  4.22753e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1831  CDS  NC_009253  2011637  2012116  480  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001113181  decreased coverage  1.1696e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1832  CDS  NC_009253  2012265  2012897  633  regulatory protein RecX  YP_001113182  decreased coverage  2.37613e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1869  CDS  NC_009253  2054648  2056405  1758  succinate dehydrogenase flavoprotein subunit  YP_001113218  decreased coverage  0.000746215  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1910  CDS  NC_009253  2100411  2100968  558  adenosylcobinamide-phosphate guanylyltransferase  YP_001113256  decreased coverage  9.91771e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1949  CDS  NC_009253  2139379  2140053  675  cell wall hydrolase, SleB  YP_001113293  decreased coverage  2.01814e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1961  CDS  NC_009253  2151694  2152155  462  hypothetical protein  YP_001113304  decreased coverage  0.00677493  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1979  CDS  NC_009253  2172945  2173730  786  transcriptional repressor CodY  YP_001113322  decreased coverage  2.33439e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1980  CDS  NC_009253  2173752  2175152  1401  ATP-dependent protease ATP-binding subunit HslU  YP_001113323  decreased coverage  4.59444e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_1991  CDS  NC_009253  2188114  2189565  1452  anion transporter  YP_001113334  decreased coverage  3.56301e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2009  CDS  NC_009253  2209215  2210615  1401  hypothetical protein  YP_001113351  decreased coverage  9.64515e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2022  CDS  NC_009253  2226074  2226448  375  hypothetical protein  YP_001113364  decreased coverage  1.28299e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2048  CDS  NC_009253  2246755  2247609  855  GTP-binding protein, HSR1-related  YP_001113390  decreased coverage  3.91161e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2056  CDS  NC_009253  2251096  2252436  1341  signal recognition particle protein  YP_001113398  decreased coverage  6.90531e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2161  CDS  NC_009253  2364588  2365760  1173  radical SAM domain-containing protein  YP_001113503  decreased coverage  0.000156576  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2162  CDS  NC_009253  2365809  2367347  1539  uroporphyrin-III C-methyltransferase  YP_001113504  decreased coverage  0.000123773  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2227  CDS  NC_009253  2433659  2434675  1017  hypothetical protein  YP_001113565  decreased coverage  0.00471107  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2229  CDS  NC_009253  2436278  2437165  888  hypothetical protein  YP_001113567  decreased coverage  0.00351447  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2284  CDS  NC_009253  2497616  2497840  225  NifU domain-containing protein  YP_001113619  decreased coverage  2.78833e-07  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2285  CDS  NC_009253  2498067  2499149  1083  putative transmembrane anti-sigma factor  YP_001113620  decreased coverage  8.26117e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2301  CDS  NC_009253  2515505  2516377  873  extracellular solute-binding protein  YP_001113636  decreased coverage  8.29755e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2356  CDS  NC_009253  2576442  2577110  669  ATP phosphoribosyltransferase catalytic subunit  YP_001113691  decreased coverage  4.40945e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2376  CDS  NC_009253  2601442  2601981  540  hypoxanthine phosphoribosyltransferase  YP_001113711  decreased coverage  0.00118053  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2377  CDS  NC_009253  2602129  2602872  744  hypothetical protein  YP_001113712  decreased coverage  0.00177224  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2456  CDS  NC_009253  2672090  2672569  480  ribonuclease H  YP_001113791  decreased coverage  4.08734e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2474  CDS  NC_009253  2697117  2697566  450  hypothetical protein  YP_001113809  decreased coverage  6.87328e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2499  CDS  NC_009253  2719572  2720615  1044  heat-inducible transcription repressor HrcA  YP_001113834  decreased coverage  1.96344e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2536  CDS  NC_009253  2758683  2760362  1680  ribonuclease  YP_001113871  decreased coverage  0.00011944  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2675  CDS  NC_009253  2897102  2897827  726  hypothetical protein  YP_001114006  decreased coverage  0.00041222  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2683  CDS  NC_009253  2908175  2908780  606  nucleoside-triphosphatase  YP_001114014  decreased coverage  0.00341522  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2783  CDS  NC_009253  3019218  3020321  1104  phage integrase family protein  YP_001114112  decreased coverage  0.00148084  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2808  CDS  NC_009253  3046903  3047565  663  response regulator receiver/ANTAR domain-containing protein  YP_001114137  decreased coverage  0.00041222  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2810  CDS  NC_009253  3049312  3050610  1299  glutamate--ammonia ligase  YP_001114139  decreased coverage  7.80353e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2857  CDS  NC_009253  3100696  3102258  1563  methyl-accepting chemotaxis sensory transducer  YP_001114186  decreased coverage  0.000607785  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2865  CDS  NC_009253  3109957  3111069  1113  alanine racemase  YP_001114194  decreased coverage  0.000333192  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2873  CDS  NC_009253  3119860  3121488  1629  chaperonin GroEL  YP_001114202  decreased coverage  0.00235901  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2889  CDS  NC_009253  3135403  3136407  1005  thiamine-monophosphate kinase  YP_001114218  decreased coverage  2.02219e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2938  CDS  NC_009253  3181302  3182687  1386  hydroxylamine reductase  YP_001114266  decreased coverage  6.5218e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2939  CDS  NC_009253  3182797  3183969  1173  putative RNA methylase  YP_001114267  decreased coverage  3.22588e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2963  CDS  NC_009253  3216632  3218287  1656  AMP-dependent synthetase and ligase  YP_001114291  decreased coverage  1.91926e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_2980  CDS  NC_009253  3235914  3237377  1464  integral membrane sensor signal transduction histidine kinase  YP_001114308  decreased coverage  8.76727e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3114  CDS  NC_009253  3390906  3392114  1209  heat shock protein DnaJ domain-containing protein  YP_001114441  decreased coverage  3.58037e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3142  CDS  NC_009253  3421969  3424209  2241  copper amine oxidase domain-containing protein  YP_001114469  decreased coverage  0.000196448  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3171  CDS  NC_009253  3450393  3451271  879  hypothetical protein  YP_001114498  decreased coverage  1.04727e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3174  CDS  NC_009253  3453766  3455118  1353  transcription termination factor Rho  YP_001114501  decreased coverage  3.71975e-06  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3181  CDS  NC_009253  3460375  3461976  1602  CTP synthetase  YP_001114508  decreased coverage  1.27982e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3182  CDS  NC_009253  3462057  3462221  165  hypothetical protein  YP_001114509  decreased coverage  3.92757e-08  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3206  CDS  NC_009253  3486572  3486859  288  hypothetical protein  YP_001114533  decreased coverage  2.17743e-05  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
Dred_3307  CDS  NC_009253  3589204  3589626  423  single-strand binding protein  YP_001114632  decreased coverage  0.000227913  n/a    Desulfotomaculum reducens MI-1  Bacteria 
 
 
-
 
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