25 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Rsph17025_0001  CDS  NC_009428  51  329  +  279  30S ribosomal protein S20  YP_001166218  hitchhiker  0.000133909  decreased coverage  0.0000000319383  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0668  CDS  NC_009428  671884  673158  +  1275  binding-protein-dependent transport systems inner membrane component  YP_001166879  normal  1  decreased coverage  0.00457285  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0669  CDS  NC_009428  673236  674144  +  909  binding-protein-dependent transport systems inner membrane component  YP_001166880  normal  0.703183  decreased coverage  0.00406326  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0671  CDS  NC_009428  674696  675436  -  741  hypothetical protein  YP_001166882  normal  0.435313  decreased coverage  0.00362929  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0672  CDS  NC_009428  675569  675799  -  231  hypothetical protein  YP_001166883  normal  0.348568  decreased coverage  0.00306948  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0673  CDS  NC_009428  675921  676853  +  933  LysR family transcriptional regulator  YP_001166884  normal  0.123933  decreased coverage  0.00380612  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0674  CDS  NC_009428  676858  677817  -  960  alcohol dehydrogenase  YP_001166885  normal  0.829367  decreased coverage  0.00401474  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0675  CDS  NC_009428  678181  678543  +  363  XRE family transcriptional regulator  YP_001166886  normal  1  decreased coverage  0.00325967  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0676  CDS  NC_009428  678633  679433  +  801  inositol monophosphatase  YP_001166887  normal  1  decreased coverage  0.00406326  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0677  CDS  NC_009428  679502  682966  -  3465  pyruvate carboxylase  YP_001166888  normal  1  decreased coverage  0.00418471  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1353  CDS  NC_009428  1386543  1386827  +  285  hypothetical protein  YP_001167555  decreased coverage  0.00391716  normal  0.382078  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1382  CDS  NC_009428  1410446  1412413  +  1968  TonB-dependent receptor  YP_001167584  decreased coverage  0.00890122  normal  0.0713693  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1674  CDS  NC_009428  1717519  1720191  -  2673  multi-sensor hybrid histidine kinase  YP_001167872  decreased coverage  0.00434081  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1812  CDS  NC_009428  1855924  1856640  +  717  hypothetical protein  YP_001168009  decreased coverage  0.00550856  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2171  CDS  NC_009428  2202147  2202953  -  807  binding-protein-dependent transport systems inner membrane component  YP_001168366  decreased coverage  0.0038105  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2230  CDS  NC_009428  2264376  2264720  -  345  CMP/dCMP deaminase, zinc-binding  YP_001168425  decreased coverage  0.000174043  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2231  CDS  NC_009428  2264989  2266389  +  1401  RNA-binding S4 domain-containing protein  YP_001168426  decreased coverage  0.00234161  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2232  CDS  NC_009428  2266544  2267422  +  879  hypothetical protein  YP_001168427  decreased coverage  0.000421575  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2340  CDS  NC_009428  2386556  2387149  -  594  RNA polymerase sigma factor  YP_001168534  decreased coverage  0.00121404  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2591  CDS  NC_009428  2631387  2632163  -  777  enoyl-CoA hydratase/isomerase  YP_001168784  decreased coverage  0.000604766  decreased coverage  0.0000000224287  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2592  CDS  NC_009428  2632224  2633075  -  852  formamidopyrimidine-DNA glycosylase  YP_001168785  normal  0.0171535  decreased coverage  0.0000000235348  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2593  CDS  NC_009428  2633169  2633921  +  753  ubiquinone/menaquinone biosynthesis methyltransferase  YP_001168786  hitchhiker  0.00547032  decreased coverage  0.0000000226487  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2931  CDS  NC_009428  2988635  2989981  +  1347  peptidase M16 domain-containing protein  YP_001169122  decreased coverage  0.00146664  normal  0.111067  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3022  CDS  NC_009428  3093489  3094178  -  690  ABC transporter related  YP_001169211  decreased coverage  0.000385784  normal  1  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3139  CDS  NC_009428  3216366  3217574  -  1209  hypothetical protein  YP_001169328  decreased coverage  0.0000634596  decreased coverage  0.0000000576575  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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