36 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rsph17025_0001  CDS  NC_009428  51  329  279  30S ribosomal protein S20  YP_001166218  hitchhiker  0.000133909  decreased coverage  3.19383e-08  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0668  CDS  NC_009428  671884  673158  1275  binding-protein-dependent transport systems inner membrane component  YP_001166879  normal  decreased coverage  0.00457285  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0669  CDS  NC_009428  673236  674144  909  binding-protein-dependent transport systems inner membrane component  YP_001166880  normal  0.703183  decreased coverage  0.00406326  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0671  CDS  NC_009428  674696  675436  741  hypothetical protein  YP_001166882  normal  0.435313  decreased coverage  0.00362929  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0672  CDS  NC_009428  675569  675799  231  hypothetical protein  YP_001166883  normal  0.348568  decreased coverage  0.00306948  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0673  CDS  NC_009428  675921  676853  933  LysR family transcriptional regulator  YP_001166884  normal  0.123933  decreased coverage  0.00380612  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0674  CDS  NC_009428  676858  677817  960  alcohol dehydrogenase  YP_001166885  normal  0.829367  decreased coverage  0.00401474  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0675  CDS  NC_009428  678181  678543  363  XRE family transcriptional regulator  YP_001166886  normal  decreased coverage  0.00325967  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0676  CDS  NC_009428  678633  679433  801  inositol monophosphatase  YP_001166887  normal  decreased coverage  0.00406326  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_0677  CDS  NC_009428  679502  682966  3465  pyruvate carboxylase  YP_001166888  normal  decreased coverage  0.00418471  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1353  CDS  NC_009428  1386543  1386827  285  hypothetical protein  YP_001167555  decreased coverage  0.00391716  normal  0.382078  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1382  CDS  NC_009428  1410446  1412413  1968  TonB-dependent receptor  YP_001167584  decreased coverage  0.00890122  normal  0.0713693  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1674  CDS  NC_009428  1717519  1720191  2673  multi-sensor hybrid histidine kinase  YP_001167872  decreased coverage  0.00434081  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_1812  CDS  NC_009428  1855924  1856640  717  hypothetical protein  YP_001168009  decreased coverage  0.00550856  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2171  CDS  NC_009428  2202147  2202953  807  binding-protein-dependent transport systems inner membrane component  YP_001168366  decreased coverage  0.0038105  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2230  CDS  NC_009428  2264376  2264720  345  CMP/dCMP deaminase, zinc-binding  YP_001168425  decreased coverage  0.000174043  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2231  CDS  NC_009428  2264989  2266389  1401  RNA-binding S4 domain-containing protein  YP_001168426  decreased coverage  0.00234161  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2232  CDS  NC_009428  2266544  2267422  879  hypothetical protein  YP_001168427  decreased coverage  0.000421575  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2340  CDS  NC_009428  2386556  2387149  594  RNA polymerase sigma factor  YP_001168534  decreased coverage  0.00121404  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2591  CDS  NC_009428  2631387  2632163  777  enoyl-CoA hydratase/isomerase  YP_001168784  decreased coverage  0.000604766  decreased coverage  2.24287e-08  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2592  CDS  NC_009428  2632224  2633075  852  formamidopyrimidine-DNA glycosylase  YP_001168785  normal  0.0171535  decreased coverage  2.35348e-08  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2593  CDS  NC_009428  2633169  2633921  753  ubiquinone/menaquinone biosynthesis methyltransferase  YP_001168786  hitchhiker  0.00547032  decreased coverage  2.26487e-08  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_2931  CDS  NC_009428  2988635  2989981  1347  peptidase M16 domain-containing protein  YP_001169122  decreased coverage  0.00146664  normal  0.111067  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3022  CDS  NC_009428  3093489  3094178  690  ABC transporter related  YP_001169211  decreased coverage  0.000385784  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3139  CDS  NC_009428  3216366  3217574  1209  hypothetical protein  YP_001169328  decreased coverage  6.34596e-05  decreased coverage  5.76575e-08  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3253  CDS  NC_009429  122102  122899  798  ABC transporter related  YP_001169442  decreased coverage  0.00665342  normal  0.245763  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3391  CDS  NC_009429  266651  267193  543  hypothetical protein  YP_001169573  decreased coverage  0.00597312  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3533  CDS  NC_009429  422289  422549  261  Type I restriction-modification system methyltransferase subunit-like protein  YP_001169708  decreased coverage  0.000840506  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3587  CDS  NC_009429  476435  477715  1281  hypothetical protein  YP_001169761  decreased coverage  0.00157379  normal  0.457211  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3588  CDS  NC_009429  477719  478483  765  hypothetical protein  YP_001169762  decreased coverage  0.00208776  normal  0.410255  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3589  CDS  NC_009429  478497  479225  729  hypothetical protein  YP_001169763  decreased coverage  0.00166037  normal  0.283325  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3627  CDS  NC_009429  516525  517154  630  hypothetical protein  YP_001169800  decreased coverage  0.00521667  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3933  CDS  NC_009429  835851  836276  426  hypothetical protein  YP_001170092  decreased coverage  0.00670375  normal  0.940576  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_3976  CDS  NC_009430  3238  3975  738  short chain dehydrogenase  YP_001170135  decreased coverage  0.00930617  normal  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_4073  CDS  NC_009430  124835  126340  1506  hypothetical protein  YP_001170230  decreased coverage  0.000220985  normal  0.0992314  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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Rsph17025_4390  CDS  NC_009432  34977  35987  1011  parB-like partition protein  YP_001170538  decreased coverage  2.97603e-08  normal  0.71215  Rhodobacter sphaeroides ATCC 17025  Bacteria 
 
 
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