61 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rsph17029_0094  CDS  NC_009049  107775  108878  1104  ABC transporter related  YP_001041986  decreased coverage  0.00776144  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_0326  CDS  NC_009049  341408  341617  210  hypothetical protein  YP_001042214  decreased coverage  0.00961645  normal  0.801117  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_0457  CDS  NC_009049  473897  475438  1542  integral membrane protein MviN  YP_001042345  decreased coverage  0.00421085  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_0829  CDS  NC_009049  841894  843219  1326  histidinol dehydrogenase  YP_001042712  decreased coverage  0.00615903  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_0959  CDS  NC_009049  989136  990221  1086  histidinol-phosphate aminotransferase  YP_001042842  decreased coverage  0.00272091  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_1022  CDS  NC_009049  1054911  1055426  516  hypothetical protein  YP_001042905  decreased coverage  0.00948106  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_1253  CDS  NC_009049  1299909  1300400  492  hypothetical protein  YP_001043135  decreased coverage  0.00971049  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_1321  CDS  NC_009049  1368489  1370213  1725  extracellular solute-binding protein  YP_001043203  decreased coverage  0.00160153  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1342  CDS  NC_009049  1391649  1392131  483  Holliday junction resolvase-like protein  YP_001043224  decreased coverage  0.00888056  normal  0.184568  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_1362  CDS  NC_009049  1416962  1417702  741  uridylate kinase  YP_001043244  normal  decreased coverage  0.00482599  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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Rsph17029_1363  CDS  NC_009049  1417788  1418354  567  ribosome recycling factor  YP_001043245  normal  decreased coverage  0.00468039  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1369  CDS  NC_009049  1422913  1425312  2400  surface antigen (D15)  YP_001043251  normal  0.747321  decreased coverage  0.00880921  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1370  CDS  NC_009049  1425312  1426004  693  outer membrane chaperone Skp (OmpH)  YP_001043252  normal  0.249097  decreased coverage  0.00550901  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1381  CDS  NC_009049  1435837  1437489  1653  putative alpha-isopropylmalate/homocitrate synthase family transferase  YP_001043263  decreased coverage  0.000314343  normal  0.935869  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1384  CDS  NC_009049  1438973  1440193  1221  major facilitator transporter  YP_001043266  decreased coverage  0.00122539  normal  0.869525  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1434  CDS  NC_009049  1488101  1488988  888  ribokinase-like domain-containing protein  YP_001043316  normal  decreased coverage  0.00349214  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1516  CDS  NC_009049  1585116  1586225  1110  ABC transporter related  YP_001043398  decreased coverage  0.00369229  normal  0.0599486  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1551  CDS  NC_009049  1631537  1632373  837  HemK family modification methylase  YP_001043433  decreased coverage  0.00225309  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1679  CDS  NC_009049  1771275  1772978  1704  methyl-accepting chemotaxis sensory transducer  YP_001043561  decreased coverage  0.00756362  hitchhiker  0.00632021  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1691  CDS  NC_009049  1783255  1784583  1329  FliI/YscN family ATPase  YP_001043573  decreased coverage  0.000838765  hitchhiker  0.000219126  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1692  CDS  NC_009049  1784585  1784992  408  hypothetical protein  YP_001043574  decreased coverage  0.00113141  hitchhiker  0.000168501  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1701  CDS  NC_009049  1791523  1792665  1143  flagellar biosynthetic protein FlhB  YP_001043583  normal  decreased coverage  2.37151e-07  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1702  CDS  NC_009049  1792674  1793438  765  hypothetical protein  YP_001043584  normal  decreased coverage  2.10847e-06  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1703  CDS  NC_009049  1793446  1794114  669  hypothetical protein  YP_001043585  normal  decreased coverage  1.99754e-06  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1704  CDS  NC_009049  1794121  1795437  1317  RNA polymerase, sigma 54 subunit, RpoN  YP_001043586  normal  decreased coverage  2.94974e-07  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1743  CDS  NC_009049  1840622  1841116  495  NADH dehydrogenase subunit I  YP_001043625  decreased coverage  0.00386762  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1876  CDS  NC_009049  1985342  1986454  1113  methyl-accepting chemotaxis sensory transducer  YP_001043752  decreased coverage  0.0073215  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1895  CDS  NC_009049  2008411  2009064  654  protein-L-isoaspartate(D-aspartate) O-methyltransferase  YP_001043771  decreased coverage  0.00733997  normal  0.520608  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1897  CDS  NC_009049  2010641  2012587  1947  1-deoxy-D-xylulose-5-phosphate synthase  YP_001043773  decreased coverage  0.00653181  normal  0.596808  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_1946  CDS  NC_009049  2065184  2065807  624  urease accessory protein UreG  YP_001043822  decreased coverage  0.00965207  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2012  CDS  NC_009049  2131017  2132660  1644  CTP synthetase  YP_001043888  decreased coverage  0.00909929  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2077  CDS  NC_009049  2198750  2199250  501  Lipocalin family protein  YP_001043952  decreased coverage  0.00774456  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2158  CDS  NC_009049  2285966  2287441  1476  two component, sigma54 specific, Fis family transcriptional regulator  YP_001044033  decreased coverage  0.00791251  normal  0.142838  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2173  CDS  NC_009049  2304542  2305489  948  alcohol dehydrogenase  YP_001044048  normal  0.0299508  decreased coverage  0.00992206  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2174  CDS  NC_009049  2305480  2306505  1026  oxidoreductase domain-containing protein  YP_001044049  normal  0.193543  decreased coverage  0.00937505  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2175  CDS  NC_009049  2306512  2307300  789  Ku domain-containing protein  YP_001044050  normal  0.0621113  decreased coverage  0.00931596  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2176  CDS  NC_009049  2307403  2308206  804  Ku domain-containing protein  YP_001044051  decreased coverage  0.00076571  normal  0.0371963  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2177  CDS  NC_009049  2308368  2309027  660  Hly-III family protein  YP_001044052  decreased coverage  0.00438954  normal  0.0630884  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2257  CDS  NC_009049  2389681  2390772  1092  phage integrase family protein  YP_001044132  decreased coverage  0.0034941  normal  0.642714  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2343  CDS  NC_009049  2477665  2479089  1425  Serine-type D-Ala-D-Ala carboxypeptidase  YP_001044217  decreased coverage  0.00256977  normal  0.198505  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2344  CDS  NC_009049  2479197  2479355  159  cytochrome oxidase maturation protein, cbb3-type  YP_001044218  decreased coverage  0.005747  normal  0.154254  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2442  CDS  NC_009049  2576852  2577871  1020  endonuclease/exonuclease/phosphatase  YP_001044316  normal  0.23952  decreased coverage  0.00360154  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2443  CDS  NC_009049  2578390  2578806  417  hypothetical protein  YP_001044317  normal  0.0539754  decreased coverage  0.00328356  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_2541  CDS  NC_009049  2677310  2679343  2034  lytic transglycosylase, catalytic  YP_001044415  decreased coverage  0.00863759  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3022  CDS  NC_009050  30974  31417  444  3-dehydroquinate dehydratase  YP_001044894  decreased coverage  0.00285164  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3129  CDS  NC_009050  145058  146386  1329  hypothetical protein  YP_001045001  decreased coverage  0.000877531  normal  0.24855  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3160  CDS  NC_009050  184269  185306  1038  extracellular solute-binding protein  YP_001045032  normal  decreased coverage  0.00659585  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3335  CDS  NC_009050  390606  390959  354  hypothetical protein  YP_001045203  decreased coverage  0.00829601  normal  0.0387957  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3343  CDS  NC_009050  396619  396807  189  YcfA family protein  YP_001045211  normal  0.429453  decreased coverage  0.00934326  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3720  CDS  NC_009050  836135  837169  1035  radical SAM domain-containing protein  YP_001045578  decreased coverage  0.0048621  normal  0.524582  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3840  CDS  NC_009050  970740  971438  699  glutathione S-transferase domain-containing protein  YP_001045692  decreased coverage  0.00883028  normal  0.988624  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3869  CDS  NC_009050  996359  997549  1191  hypothetical protein  YP_001045720  decreased coverage  0.000457394  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3935  CDS  NC_009050  1069431  1070090  660  electron transport complex, RnfABCDGE type, G subunit  YP_001045785  decreased coverage  0.00699897  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3936  CDS  NC_009050  1070107  1070841  735  electron transport complex RsxE subunit  YP_001045786  decreased coverage  0.000255424  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_3979  CDS  NC_009050  1120523  1121215  693  hypothetical protein  YP_001045829  decreased coverage  0.0086043  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4049  CDS  NC_009050  1201137  1201964  828  response regulator receiver protein  YP_001045899  decreased coverage  0.00251355  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4070  CDS  NC_009040  6898  9072  2175  ABC transporter related  YP_001041784  decreased coverage  1.05324e-06  normal  0.180346  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4088  CDS  NC_009040  28841  29833  993  hypothetical protein  YP_001041802  decreased coverage  0.00189441  normal  0.318027  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4102  CDS  NC_009040  44048  44752  705  H+-transporting two-sector ATPase, B/B' subunit  YP_001041816  decreased coverage  5.08858e-05  normal  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4161  CDS  NC_009040  98985  99350  366  flagellar biosynthesis regulatory protein FlaF  YP_001041864  decreased coverage  0.00719827  normal  0.323743  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
-
 
Rsph17029_4177  CDS  NC_009040  112492  113118  627  lysine exporter protein LysE/YggA  YP_001041880  decreased coverage  0.00817144  normal  0.249821  Rhodobacter sphaeroides ATCC 17029  Bacteria 
 
 
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