93 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
VC0395_0167  CDS  NC_009456  195657  196796  1140  hypothetical protein  YP_001215008  decreased coverage  2.40644e-08  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0210  CDS  NC_009456  243217  244848  1632  methyl-accepting chemotaxis protein  YP_001215051  decreased coverage  8.24359e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0326  CDS  NC_009456  357982  358668  687  TonB system transport protein ExbB1  YP_001215167  decreased coverage  9.84448e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0341  CDS  NC_009456  373386  374891  1506  glucose-6-phosphate 1-dehydrogenase  YP_001215182  decreased coverage  3.08614e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0412  CDS  NC_009456  455644  457068  1425  aspartate kinase  YP_001215253  decreased coverage  1.11891e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0426  CDS  NC_009456  471958  472650  693  MaoC domain-containing protein  YP_001215267  decreased coverage  1.06685e-15  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0499  CDS  NC_009456  555835  557334  1500  sensor histidine kinase  YP_001215338  decreased coverage  1.3599e-08  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0549  CDS  NC_009456  605616  606023  408  nucleoside diphosphate kinase regulator  YP_001215388  decreased coverage  3.52077e-15  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0722  CDS  NC_009456  782136  784583  2448  hypothetical protein  YP_001215558  decreased coverage  4.80127e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0941  CDS  NC_009456  917125  917514  390  initiation factor IF3  YP_001215777  decreased coverage  8.00163e-15  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0942  CDS  NC_009456  917680  919608  1929  threonyl-tRNA synthetase  YP_001215778  decreased coverage  4.84442e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_0992  CDS  NC_009456  967607  968176  570  hypothetical protein  YP_001215828  decreased coverage  9.86598e-16  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_1092  CDS  NC_009456  1057319  1057528  210  cold shock DNA-binding domain-containing protein  YP_001215928  decreased coverage  0.000741991  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0028  CDS  NC_009457  22921  24879  1959  enterobactin receptor protein  YP_001216002  decreased coverage  5.07235e-05  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0029  CDS  NC_009457  25031  26056  1026  erythrose 4-phosphate dehydrogenase  YP_001216003  decreased coverage  0.000119037  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0075  CDS  NC_009457  71375  71572  198  carbon storage regulator  YP_001216048  decreased coverage  9.05817e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0076  tRNA  NC_009457  71754  71846  93  tRNA-Ser    decreased coverage  6.54825e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0104  CDS  NC_009457  94284  94676  393  30S ribosomal protein S9  YP_001216069  decreased coverage  5.69691e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0125  CDS  NC_009457  111657  113030  1374  polyA polymerase  YP_001216090  decreased coverage  1.72768e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0126  CDS  NC_009457  113121  114011  891  glutamyl-Q tRNA(Asp) synthetase  YP_001216091  decreased coverage  3.6555e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0265  CDS  NC_009457  278203  279108  906  LysR family transcriptional regulator  YP_001216221  decreased coverage  0.000402003  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0284  CDS  NC_009457  297139  298473  1335  aminopeptidase B  YP_001216240  decreased coverage  9.40358e-06  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0401  CDS  NC_009457  430535  431230  696  hypothetical protein  YP_001216356  decreased coverage  1.12089e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0417  CDS  NC_009457  443586  445133  1548  thiamine biosynthesis protein ThiI  YP_001216372  decreased coverage  3.83743e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0470  CDS  NC_009457  501750  502925  1176  D-alanyl-D-alanine carboxypeptidase  YP_001216421  decreased coverage  3.48683e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0487  CDS  NC_009457  520484  522205  1722  phosphoenolpyruvate-protein phosphotransferase  YP_001216438  decreased coverage  3.35072e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0557  CDS  NC_009457  597287  599398  2112  asmA protein  YP_001216507  decreased coverage  0.00432882  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0662  CDS  NC_009457  696843  697076  234  hypothetical protein  YP_001216612  decreased coverage  1.65779e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0781  CDS  NC_009457  793658  794272  615  hypothetical protein  YP_001216731  decreased coverage  2.08044e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0782  CDS  NC_009457  794259  794453  195  hypothetical protein  YP_001216732  decreased coverage  1.39037e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0877  CDS  NC_009457  888677  891361  2685  DNA gyrase, subunit A  YP_001216823  decreased coverage  5.17937e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0889  CDS  NC_009457  904486  905202  717  hypothetical protein  YP_001216836  decreased coverage  5.51267e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0891  CDS  NC_009457  905306  905719  414  hypothetical protein  YP_001216837  decreased coverage  9.47436e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0907  CDS  NC_009457  923029  924666  1638  glucan biosynthesis protein D  YP_001216853  decreased coverage  2.01606e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0918  CDS  NC_009457  938480  939841  1362  L-serine dehydratase 1  YP_001216864  decreased coverage  1.89103e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A0919  CDS  NC_009457  939934  941187  1254  serine transporter  YP_001216865  decreased coverage  1.10337e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1104  CDS  NC_009457  1160197  1162194  1998  carboxy-terminal protease  YP_001217050  decreased coverage  1.53479e-08  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1105  CDS  NC_009457  1162212  1162838  627  putative solute/DNA competence effector  YP_001217051  decreased coverage  9.47436e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1143  CDS  NC_009457  1203696  1204127  432  hypothetical protein  YP_001217089  decreased coverage  0.00345292  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1209  CDS  NC_009457  1271036  1271722  687  response regulator  YP_001217153  decreased coverage  0.000538312  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1210  CDS  NC_009457  1271722  1273338  1617  putative sensor kinase citA  YP_001217154  decreased coverage  0.000551679  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1211  CDS  NC_009457  1274068  1275498  1431  hypothetical protein  YP_001217155  decreased coverage  5.12131e-06  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1212  CDS  NC_009457  1275510  1276484  975  hypothetical protein  YP_001217156  decreased coverage  0.000214097  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1232  CDS  NC_009457  1298958  1301843  2886  aminotransferase, class III/decarboxylase, group II  YP_001217176  decreased coverage  1.22861e-07  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1242  CDS  NC_009457  1314085  1316058  1974  DEAD-box ATP dependent DNA helicase  YP_001217186  decreased coverage  3.76746e-10  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1243  CDS  NC_009457  1316323  1316730  408  hypothetical protein  YP_001217187  decreased coverage  1.84461e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1267  CDS  NC_009457  1346820  1347086  267  hypothetical protein  YP_001217211  decreased coverage  2.98758e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1308  CDS  NC_009457  1388244  1390529  2286  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  YP_001217252  decreased coverage  1.66944e-06  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1321  CDS  NC_009457  1409686  1410534  849  hypothetical protein  YP_001217265  decreased coverage  3.40007e-06  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1353  CDS  NC_009457  1443655  1444233  579  putative lipoprotein  YP_001217297  decreased coverage  1.61061e-10  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1354  CDS  NC_009457  1444449  1445543  1095  HlyD family secretion protein  YP_001217298  decreased coverage  3.36467e-10  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1486  CDS  NC_009457  1595582  1597000  1419  hypothetical protein  YP_001217429  decreased coverage  0.00338852  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1545  CDS  NC_009457  1664209  1664871  663  septum formation inhibitor  YP_001217486  decreased coverage  7.16221e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1546  CDS  NC_009457  1664874  1665704  831  septum site-determining protein MinD  YP_001217487  decreased coverage  3.80987e-08  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1656  CDS  NC_009457  1775901  1777388  1488  flagellar biosynthesis regulator FlhF  YP_001217595  decreased coverage  2.27361e-05  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1683  CDS  NC_009457  1811627  1812400  774  hydrolase  YP_001217622  decreased coverage  7.46451e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1684  CDS  NC_009457  1812496  1812717  222  hypothetical protein  YP_001217623  decreased coverage  4.24773e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1688  CDS  NC_009457  1814618  1815496  879  LysR family transcriptional regulator  YP_001217627  decreased coverage  7.76975e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1689  CDS  NC_009457  1815500  1816000  501  hypothetical protein  YP_001217628  decreased coverage  6.92743e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1721  CDS  NC_009457  1844403  1845869  1467  flagellar regulatory protein A  YP_001217660  decreased coverage  9.386e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1863  CDS  NC_009457  1980342  1981595  1254  gamma-glutamyl phosphate reductase  YP_001217787  decreased coverage  1.48264e-05  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1865  CDS  NC_009457  1982858  1983247  390  DNA-binding transcriptional regulator Crl  YP_001217789  decreased coverage  3.81316e-06  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1884  CDS  NC_009457  2002774  2004162  1389  Na(+)-translocating NADH-quinone reductase subunit A  YP_001217808  decreased coverage  5.68593e-08  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1935  CDS  NC_009457  2065030  2066460  1431  sodium/alanine symporter  YP_001217859  decreased coverage  1.92586e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A1946  CDS  NC_009457  2077084  2077467  384  hypothetical protein  YP_001217870  decreased coverage  2.22143e-05  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2022  CDS  NC_009457  2176033  2176803  771  putative general secretion pathway protein B  YP_001217946  decreased coverage  1.27173e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2028  CDS  NC_009457  2183090  2183926  837  nucleoside triphosphate pyrophosphohydrolase  YP_001217952  decreased coverage  4.62745e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2054  CDS  NC_009457  2211063  2211371  309  hypothetical protein  YP_001217978  decreased coverage  9.11462e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2206  CDS  NC_009457  2354335  2354859  525  shikimate kinase I  YP_001218122  decreased coverage  1.84461e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2223  CDS  NC_009457  2375378  2375917  540  hypothetical protein  YP_001218139  decreased coverage  7.56416e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2224  CDS  NC_009457  2375866  2375994  129  hypothetical protein  YP_001218140  decreased coverage  2.03792e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2225  CDS  NC_009457  2376033  2376854  822  serine acetyltransferase  YP_001218141  decreased coverage  5.64542e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2369  CDS  NC_009457  2525874  2526515  642  DNA-binding transcriptional repressor FabR  YP_001218269  decreased coverage  1.23396e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2397  CDS  NC_009457  2550694  2553225  2532  adenylate cyclase  YP_001218297  decreased coverage  4.08129e-05  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2461  CDS  NC_009457  2615691  2615831  141  hypothetical protein  YP_001218354  decreased coverage  1.89144e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2463  CDS  NC_009457  2616017  2616571  555  carbonic anhydrase  YP_001218355  decreased coverage  1.49932e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2537  CDS  NC_009457  2690495  2691019  525  protoporphyrinogen oxidase  YP_001218430  decreased coverage  5.81009e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2538  CDS  NC_009457  2691167  2691307  141  hypothetical protein  YP_001218431  decreased coverage  5.17736e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2685  CDS  NC_009457  2841969  2842265  297  DNA-binding protein Fis  YP_001218563  decreased coverage  4.30069e-09  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2686  CDS  NC_009457  2842289  2843284  996  NifR3/Smm1 family protein  YP_001218564  decreased coverage  2.4991e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2705  CDS  NC_009457  2865912  2866049  138  hypothetical protein  YP_001218583  decreased coverage  4.00511e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2706  rRNA  NC_009457  2866230  2867765  1536  16S ribosomal RNA    decreased coverage  3.99166e-11  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2720  tRNA  NC_009457  2877015  2877099  85  tRNA-Tyr    decreased coverage  2.67596e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2721  tRNA  NC_009457  2877135  2877209  75  tRNA-Gly    decreased coverage  2.23193e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2722  tRNA  NC_009457  2877223  2877298  76  tRNA-Thr    decreased coverage  2.64941e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2723  CDS  NC_009457  2877411  2878595  1185  elongation factor Tu  YP_001218589  decreased coverage  4.08037e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2726  CDS  NC_009457  2879894  2880322  429  50S ribosomal protein L11  YP_001218592  decreased coverage  9.3206e-13  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2774  CDS  NC_009457  2923846  2925030  1185  elongation factor Tu  YP_001218632  decreased coverage  4.37207e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2776  CDS  NC_009457  2925591  2926067  477  bacterioferritin  YP_001218634  decreased coverage  7.06514e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2777  CDS  NC_009457  2926279  2926647  369  30S ribosomal protein S6  YP_001218635  decreased coverage  7.78979e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2780  CDS  NC_009457  2927234  2927683  450  50S ribosomal protein L9  YP_001218638  decreased coverage  9.28974e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2852  CDS  NC_009457  3007298  3008344  1047  octaprenyl-diphosphate synthase  YP_001218702  decreased coverage  3.55591e-12  n/a    Vibrio cholerae O395  Bacteria 
 
 
-
 
VC0395_A2853  CDS  NC_009457  3008540  3008851  312  50S ribosomal protein L21  YP_001218703  decreased coverage  6.34591e-14  n/a    Vibrio cholerae O395  Bacteria 
 
 
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