90 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Patl_0001  CDS  NC_008228  96  1520  +  1425  chromosomal replication initiator protein DnaA  YP_659588  decreased coverage  0.00208216  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0002  CDS  NC_008228  1541  2644  +  1104  DNA polymerase III, beta subunit  YP_659589  decreased coverage  0.00000485336  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0045  CDS  NC_008228  56671  57924  -  1254  phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase  YP_659631  decreased coverage  0.00115408  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0122  CDS  NC_008228  142237  145131  +  2895  TonB-dependent receptor  YP_659708  decreased coverage  0.00390144  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
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Patl_0148  CDS  NC_008228  176706  177308  +  603  single-strand binding protein  YP_659734  decreased coverage  0.000650066  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0191  CDS  NC_008228  226817  229252  -  2436  Ig-like, group 1  YP_659777  decreased coverage  0.000536098  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0311  CDS  NC_008228  359646  361739  -  2094  TonB-dependent siderophore receptor  YP_659897  decreased coverage  0.000107098  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0464  CDS  NC_008228  538040  540127  -  2088  elongation factor G  YP_660048  decreased coverage  0.000919416  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0551  CDS  NC_008228  641780  642886  -  1107  AFG1-like ATPase  YP_660134  decreased coverage  0.000457757  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0552  CDS  NC_008228  643130  643570  +  441  hypothetical protein  YP_660135  decreased coverage  0.0000668594  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0553  CDS  NC_008228  643664  645034  +  1371  protease Do  YP_660136  decreased coverage  0.000923563  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0593  CDS  NC_008228  678622  679194  +  573  NusG antitermination factor  YP_660176  decreased coverage  0.0000418183  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0594  CDS  NC_008228  679596  680024  +  429  ribosomal protein L11  YP_660177  decreased coverage  0.0000269533  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0602  CDS  NC_008228  691767  693872  +  2106  translation elongation factor G  YP_660185  decreased coverage  0.000132615  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0606  CDS  NC_008228  698816  701434  -  2619  phosphoenolpyruvate carboxylase  YP_660189  decreased coverage  0.00195008  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0665  CDS  NC_008228  767936  769003  -  1068  3-dehydroquinate synthase  YP_660248  decreased coverage  0.0000291417  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0789  CDS  NC_008228  909153  909995  -  843  hypothetical protein  YP_660371  decreased coverage  0.00000257398  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0826  CDS  NC_008228  966778  968661  +  1884  sulfatase  YP_660408  decreased coverage  0.0000772105  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0896  CDS  NC_008228  1067420  1068862  +  1443  aldehyde dehydrogenase  YP_660476  decreased coverage  0.0023842  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0925  CDS  NC_008228  1100914  1101645  +  732  septum site-determining protein MinC  YP_660505  decreased coverage  0.00858984  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0945  CDS  NC_008228  1129375  1130169  -  795  hypothetical protein  YP_660525  decreased coverage  0.00000136612  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0952  CDS  NC_008228  1137877  1138638  +  762  3-ketoacyl-(acyl-carrier-protein) reductase  YP_660532  decreased coverage  0.00858984  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_0986  CDS  NC_008228  1177846  1178694  -  849  hypothetical protein  YP_660566  decreased coverage  0.00000136612  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1016  CDS  NC_008228  1200965  1201738  -  774  hypothetical protein  YP_660596  decreased coverage  0.00000119639  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1034  CDS  NC_008228  1231418  1231969  +  552  PEP motif-containing protein  YP_660614  decreased coverage  0.00980254  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1050  CDS  NC_008228  1254453  1255289  +  837  putative signal transduction protein  YP_660630  decreased coverage  0.00648352  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1051  CDS  NC_008228  1255365  1256270  -  906  recombination associated protein  YP_660631  decreased coverage  0.00571241  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1059  CDS  NC_008228  1268066  1270399  -  2334  TonB-dependent receptor  YP_660639  decreased coverage  0.000502668  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1236  CDS  NC_008228  1484833  1485636  +  804  serine O-acetyltransferase  YP_660816  decreased coverage  0.00306075  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1256  CDS  NC_008228  1504688  1506040  +  1353  putative membrane-associated zinc metalloprotease  YP_660836  decreased coverage  0.000401781  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1353  CDS  NC_008228  1627007  1627273  -  267  XRE family transcriptional regulator  YP_660933  decreased coverage  0.000308869  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1400  CDS  NC_008228  1683561  1684424  +  864  OmpA/MotB  YP_660979  decreased coverage  0.000117865  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1401  CDS  NC_008228  1684559  1685548  -  990  glycerophosphodiester phosphodiesterase  YP_660980  decreased coverage  0.00000351864  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1431  CDS  NC_008228  1720632  1721882  -  1251  lyase precursor-like  YP_661008  decreased coverage  0.00000675912  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1628  CDS  NC_008228  1935321  1936850  +  1530  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit  YP_661204  decreased coverage  0.00231354  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1723  CDS  NC_008228  2058701  2061307  +  2607  TonB-dependent receptor  YP_661298  decreased coverage  0.00128023  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1775  CDS  NC_008228  2132297  2133631  +  1335  cell division protein ZipA  YP_661350  decreased coverage  0.00000785839  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1794  CDS  NC_008228  2153263  2154543  -  1281  citrate synthase I  YP_661369  decreased coverage  0.00000880013  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1795  CDS  NC_008228  2154956  2155330  +  375  succinate dehydrogenase, cytochrome b subunit  YP_661370  decreased coverage  0.000000214378  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1822  CDS  NC_008228  2189984  2192254  -  2271  TonB-dependent receptor, plug  YP_661396  decreased coverage  0.000398859  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1895  CDS  NC_008228  2291918  2292691  -  774  hydroxyacylglutathione hydrolase  YP_661469  decreased coverage  0.00137094  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1913  CDS  NC_008228  2316179  2317828  -  1650  AMP-dependent synthetase and ligase  YP_661485  decreased coverage  0.000707868  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_1961  CDS  NC_008228  2377004  2377786  +  783  phytanoyl-CoA dioxygenase  YP_661533  decreased coverage  0.00281638  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2175  CDS  NC_008228  2626295  2627167  -  873  3-hydroxyisobutyrate dehydrogenase  YP_661747  decreased coverage  0.00502561  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2182  CDS  NC_008228  2635239  2637857  -  2619  hypothetical protein  YP_661754  decreased coverage  0.000870738  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2205  CDS  NC_008228  2662859  2663710  -  852  2-dehydro-3-deoxyphosphooctonate aldolase  YP_661777  decreased coverage  0.00380031  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2275  CDS  NC_008228  2767476  2769815  -  2340  TonB-dependent receptor  YP_661846  decreased coverage  0.00175316  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2276  CDS  NC_008228  2769822  2770832  -  1011  TonB family protein  YP_661847  decreased coverage  0.000987559  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2300  CDS  NC_008228  2800762  2801205  -  444  protein of unknown function, Spy-related  YP_661871  decreased coverage  0.000000365275  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2320  CDS  NC_008228  2824739  2825614  +  876  putative cyclase  YP_661891  decreased coverage  0.000000962152  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2363  CDS  NC_008228  2877929  2879374  -  1446  hypothetical protein  YP_661933  decreased coverage  0.000015183  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2373  CDS  NC_008228  2886978  2887196  +  219  translation initiation factor IF-1  YP_661943  decreased coverage  0.00000287842  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2374  CDS  NC_008228  2887305  2889572  -  2268  ATP-dependent Clp protease, ATP-binding subunit clpA  YP_661944  decreased coverage  0.00226066  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2402  CDS  NC_008228  2923229  2925403  +  2175  TonB-dependent receptor, plug  YP_661972  decreased coverage  0.000227129  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2558  CDS  NC_008228  3102168  3103448  +  1281  adenosylmethionine-8-amino-7-oxononanoate aminotransferase  YP_662128  decreased coverage  0.00000437454  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2604  CDS  NC_008228  3166306  3168426  -  2121  TonB-dependent receptor  YP_662173  decreased coverage  0.000145461  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2697  CDS  NC_008228  3286684  3287847  +  1164  hypothetical protein  YP_662263  decreased coverage  0.00000409361  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2728  CDS  NC_008228  3321371  3323257  -  1887  hypothetical protein  YP_662293  decreased coverage  0.000615794  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2784  CDS  NC_008228  3379058  3379660  +  603  hypothetical protein  YP_662349  decreased coverage  0.000283407  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2785  CDS  NC_008228  3379691  3380629  -  939  auxin efflux carrier  YP_662350  decreased coverage  0.000625681  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2786  CDS  NC_008228  3380954  3383092  +  2139  peptidyl-dipeptidase Dcp  YP_662351  decreased coverage  0.0046774  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_2931  CDS  NC_008228  3553169  3553708  -  540  hypothetical protein  YP_662493  decreased coverage  0.00911801  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3137  CDS  NC_008228  3780448  3781758  -  1311  trigger factor  YP_662697  decreased coverage  0.00000644844  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3161  CDS  NC_008228  3803927  3804412  +  486  peptidylprolyl isomerase, FKBP-type  YP_662721  decreased coverage  0.00000586094  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3162  CDS  NC_008228  3804517  3804855  -  339  nitrogen regulatory protein P-II  YP_662722  decreased coverage  0.00000317831  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3330  CDS  NC_008228  3993777  3995777  -  2001  transketolase  YP_662890  decreased coverage  0.0024244  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3426  CDS  NC_008228  4104915  4106477  +  1563  amidase  YP_662986  decreased coverage  0.000155871  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3441  CDS  NC_008228  4127662  4130193  -  2532  TonB-dependent receptor  YP_663001  decreased coverage  0.00117935  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3514  CDS  NC_008228  4218703  4219875  -  1173  cell division protein FtsZ  YP_663070  decreased coverage  0.0000411228  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3561  CDS  NC_008228  4280410  4281516  -  1107  permease YjgP/YjgQ  YP_663117  decreased coverage  0.000903673  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3569  CDS  NC_008228  4292717  4293595  +  879  MltA-interacting MipA  YP_663125  decreased coverage  0.00000215128  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3606  CDS  NC_008228  4346165  4347424  -  1260  beta-lactamase  YP_663162  decreased coverage  0.000041879  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3607  CDS  NC_008228  4347602  4347832  -  231  ChaB  YP_663163  decreased coverage  0.0044472  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3739  CDS  NC_008228  4504716  4505687  +  972  trans-hexaprenyltranstransferase  YP_663295  decreased coverage  0.0000225438  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3770  CDS  NC_008228  4540393  4541679  +  1287  beta-lactamase  YP_663324  decreased coverage  0.000344014  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3818  CDS  NC_008228  4607623  4610547  -  2925  TonB-dependent receptor  YP_663372  decreased coverage  0.003378  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3852  CDS  NC_008228  4649149  4649748  +  600  SH3, type 3  YP_663406  decreased coverage  0.000664747  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3853  CDS  NC_008228  4649830  4650471  +  642  lysine exporter protein LysE/YggA  YP_663407  decreased coverage  0.00256154  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3872  CDS  NC_008228  4664747  4666309  -  1563  Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase  YP_663426  decreased coverage  0.00254916  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3912  CDS  NC_008228  4717545  4719191  +  1647  acyl-CoA dehydrogenase-like  YP_663466  decreased coverage  0.0000271467  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3944  CDS  NC_008228  4753901  4755358  +  1458  signal recognition particle-docking protein FtsY  YP_663498  decreased coverage  0.0000907128  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3945  CDS  NC_008228  4755430  4756104  +  675  cell division ATP-binding protein FtsE  YP_663499  decreased coverage  0.000529058  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_3946  CDS  NC_008228  4756175  4757155  +  981  hypothetical protein  YP_663500  decreased coverage  0.00455123  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_4064  CDS  NC_008228  4886814  4887992  -  1179  hypothetical protein  YP_663617  decreased coverage  0.00000499298  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_4165  CDS  NC_008228  5013050  5015893  +  2844  TonB-dependent receptor  YP_663718  decreased coverage  0.00322624  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_4171  CDS  NC_008228  5021331  5022743  -  1413  NLP/P60  YP_663724  decreased coverage  0.0079177  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_4300  CDS  NC_008228  5172862  5173110  -  249  F0F1 ATP synthase subunit C  YP_663853  decreased coverage  0.00293753  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_R0039  tRNA  NC_008228  2877561  2877637  -  77  tRNA-Asp    decreased coverage  0.0000000917088  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_R0040  tRNA  NC_008228  2877670  2877746  -  77  tRNA-Asp    decreased coverage  0.0000000989766  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
-
 
Patl_R0049  tRNA  NC_008228  3120067  3120143  +  77  tRNA-Met    decreased coverage  0.00205425  n/a    Pseudoalteromonas atlantica T6c  Bacteria 
 
 
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