58 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Cag_0023  CDS  NC_007514  23776  24714  939  peptide chain release factor 2  YP_378345  decreased coverage  5.81574e-09  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0151  CDS  NC_007514  169072  169362  291  hypothetical protein  YP_378472  decreased coverage  0.000205386  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0160  CDS  NC_007514  180237  181553  1317  TPR repeat-containing protein  YP_378481  decreased coverage  0.00134878  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0213  CDS  NC_007514  242187  243137  951  WD-40 repeat-containing protein  YP_378534  decreased coverage  2.59833e-06  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0241  CDS  NC_007514  272459  273520  1062  recombinase A  YP_378560  decreased coverage  5.9491e-10  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0300  CDS  NC_007514  329102  329512  411  hypothetical protein  YP_378619  decreased coverage  4.77116e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0329  CDS  NC_007514  367528  368487  960  GTPase EngC  YP_378645  decreased coverage  2.02541e-07  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0340  CDS  NC_007514  382630  384141  1512  cell wall biosynthesis glycosyltransferase-like protein  YP_378656  decreased coverage  0.00114469  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0343  CDS  NC_007514  388095  390290  2196  photosystem P840 reaction center, large subunit  YP_378659  decreased coverage  2.49067e-06  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0351  CDS  NC_007514  399687  399878  192  preprotein translocase subunit SecE  YP_378667  decreased coverage  9.2456e-08  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0390  CDS  NC_007514  453033  453701  669  FAD-dependent thymidylate synthase  YP_378706  decreased coverage  0.00258676  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0445  CDS  NC_007514  522293  523588  1296  hypothetical protein  YP_378761  decreased coverage  5.65981e-09  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0485  CDS  NC_007514  564249  565466  1218  hypothetical protein  YP_378801  decreased coverage  2.5501e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0548  CDS  NC_007514  652586  654568  1983  DNA primase  YP_378864  decreased coverage  0.00859761  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0615  CDS  NC_007514  827589  829322  1734  Outer membrane protein-like  YP_378931  decreased coverage  0.00243369  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0625  CDS  NC_007514  899122  899781  660  riboflavin synthase subunit alpha  YP_378941  decreased coverage  5.25495e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0645  CDS  NC_007514  918428  919213  786  hypothetical protein  YP_378961  decreased coverage  0.000327243  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0646  CDS  NC_007514  919226  919699  474  hypothetical protein  YP_378962  decreased coverage  5.75398e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0679  CDS  NC_007514  951102  951521  420  hypothetical protein  YP_378994  decreased coverage  2.43663e-10  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0685  CDS  NC_007514  955774  956076  303  hypothetical protein  YP_379000  decreased coverage  3.90836e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0719  CDS  NC_007514  993430  994071  642  hypothetical protein  YP_379033  decreased coverage  4.2547e-09  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0762  CDS  NC_007514  1073861  1074814  954  hypothetical protein  YP_379073  decreased coverage  0.00138696  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0860  CDS  NC_007514  1192034  1193554  1521  Fe-S type hydro-lyase tartrate/fumarate alpha and beta region  YP_379168  decreased coverage  0.0061897  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0909  CDS  NC_007514  1242866  1243147  282  hypothetical protein  YP_379217  decreased coverage  0.000839135  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0968  CDS  NC_007514  1305530  1305949  420  hypothetical protein  YP_379274  decreased coverage  0.000628475  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0993  CDS  NC_007514  1338916  1339215  300  hypothetical protein  YP_379299  decreased coverage  3.2516e-11  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0994  CDS  NC_007514  1339237  1339419  183  hypothetical protein  YP_379300  decreased coverage  8.59641e-13  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_0995  CDS  NC_007514  1339426  1339704  279  hypothetical protein  YP_379301  decreased coverage  2.90314e-11  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1018  CDS  NC_007514  1362394  1365447  3054  preprotein translocase subunit SecA  YP_379323  decreased coverage  0.00760005  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1021  CDS  NC_007514  1369800  1371317  1518  hypothetical protein  YP_379326  decreased coverage  1.00407e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1047  CDS  NC_007514  1416029  1417507  1479  hypothetical protein  YP_379352  decreased coverage  0.000670981  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1048  CDS  NC_007514  1417669  1421049  3381  hypothetical protein  YP_379353  decreased coverage  0.00227105  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1081  CDS  NC_007514  1463210  1464631  1422  D-alanyl-D-alanine carboxypeptidase  YP_379386  decreased coverage  8.06467e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1101  CDS  NC_007514  1488373  1489581  1209  putative transcriptional regulator  YP_379406  decreased coverage  1.19822e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1200  CDS  NC_007514  1595325  1596146  822  hypothetical protein  YP_379505  decreased coverage  1.73646e-08  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1245  CDS  NC_007514  1708036  1708389  354  nitrogen regulatory protein P-II (GlnB, GlnK)  YP_379549  decreased coverage  3.23623e-08  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1246  CDS  NC_007514  1708390  1708767  378  nitrogen regulatory protein P-II (GlnB, GlnK)  YP_379550  decreased coverage  5.00613e-08  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1252  CDS  NC_007514  1716681  1716989  309  ferredoxin, 2Fe-2S  YP_379556  decreased coverage  1.0791e-07  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1253  CDS  NC_007514  1717111  1719333  2223  TonB-dependent receptor, putative  YP_379557  decreased coverage  0.0080071  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1256  CDS  NC_007514  1721839  1723560  1722  TPR repeat-containing protein  YP_379560  decreased coverage  0.00857901  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1286  CDS  NC_007514  1749962  1752529  2568  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase  YP_379590  decreased coverage  2.27946e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1303  CDS  NC_007514  1771065  1771571  507  hypothetical protein  YP_379606  decreased coverage  1.11258e-11  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1304  CDS  NC_007514  1771601  1771909  309  hypothetical protein  YP_379607  decreased coverage  3.03459e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1305  CDS  NC_007514  1772111  1772395  285  co-chaperonin GroES  YP_379608  decreased coverage  2.22526e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1458  CDS  NC_007514  1924111  1924380  270  30S ribosomal protein S15  YP_379757  decreased coverage  8.52851e-11  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1459  CDS  NC_007514  1924431  1925393  963  riboflavin kinase / FAD synthetase  YP_379758  decreased coverage  6.64763e-08  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1478  CDS  NC_007514  1944524  1945501  978  glycosyl transferase  YP_379777  decreased coverage  0.00283905  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1489  CDS  NC_007514  1959630  1960337  708  hypothetical protein  YP_379788  decreased coverage  6.03911e-11  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1545  CDS  NC_007514  2025635  2026090  456  NUDIX/MutT family protein  YP_379843  decreased coverage  1.4066e-09  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1552  CDS  NC_007514  2034112  2034399  288  hypothetical protein  YP_379850  decreased coverage  1.46601e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1577  CDS  NC_007514  2060872  2061150  279  hypothetical protein  YP_379875  decreased coverage  1.58487e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1585  CDS  NC_007514  2069397  2071370  1974  adenylylsulfate reductase subunit alpha  YP_379883  decreased coverage  0.000155329  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1677  CDS  NC_007514  2177866  2178051  186  Ric1 protein  YP_379972  decreased coverage  3.25046e-12  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1724  CDS  NC_007514  2240643  2240894  252  hypothetical protein  YP_380018  decreased coverage  1.61004e-10  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1780  CDS  NC_007514  2297911  2299116  1206  phosphofructokinase  YP_380074  decreased coverage  5.06993e-06  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1854  CDS  NC_007514  2361788  2363902  2115  elongation factor G  YP_380148  decreased coverage  7.67386e-05  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_1956  CDS  NC_007514  2485192  2486448  1257  sulfite reductase, dissimilatory-type alpha subunit  YP_380247  decreased coverage  0.000200349  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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Cag_t40  tRNA  NC_007514  2025445  2025517  73  tRNA-Pro    decreased coverage  1.71726e-10  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
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