53 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rfer_0110  CDS  NC_007908  112786  113256  471  F0F1 ATP synthase subunit B  YP_521402  decreased coverage  2.61662e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0111  CDS  NC_007908  113294  113539  246  F0F1 ATP synthase subunit C  YP_521403  decreased coverage  0.00023938  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0112  CDS  NC_007908  113596  114486  891  F0F1 ATP synthase subunit A  YP_521404  decreased coverage  0.000328836  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0137  CDS  NC_007908  141058  141354  297  hypothetical protein  YP_521428  decreased coverage  0.00160252  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0143  CDS  NC_007908  145866  147050  1185  phosphonate metabolism  YP_521434  decreased coverage  0.0020256  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0275  CDS  NC_007908  280255  281118  864  amidohydrolase 2  YP_521563  decreased coverage  1.38051e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0351  CDS  NC_007908  351343  352779  1437  putative aminotransferase  YP_521636  decreased coverage  0.000167331  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0793  CDS  NC_007908  830247  831962  1716  type II and III secretion system protein  YP_522074  decreased coverage  0.00997149  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_0822  CDS  NC_007908  856890  859091  2202  primosomal protein N'  YP_522103  decreased coverage  0.000167881  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1032  CDS  NC_007908  1091283  1091966  684  amino acid ABC transporter permease  YP_522305  decreased coverage  9.22275e-07  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1076  CDS  NC_007908  1150926  1151630  705  ABC transporter related  YP_522348  decreased coverage  1.01179e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1077  CDS  NC_007908  1151700  1152893  1194  extracellular ligand-binding receptor  YP_522349  decreased coverage  5.54995e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1097  CDS  NC_007908  1174624  1175874  1251  extracellular solute-binding protein  YP_522369  decreased coverage  4.86653e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1098  CDS  NC_007908  1176129  1177388  1260  sodium/hydrogen exchanger  YP_522370  decreased coverage  0.000276702  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1142  CDS  NC_007908  1226243  1226494  252  hypothetical protein  YP_522411  decreased coverage  0.00449022  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1143  CDS  NC_007908  1226642  1227025  384  heavy metal transport/detoxification protein  YP_522412  decreased coverage  0.00252134  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1355  CDS  NC_007908  1460696  1461541  846  cobyrinic acid a,c-diamide synthase  YP_522620  decreased coverage  0.00367255  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1368  CDS  NC_007908  1476420  1477040  621  hypothetical protein  YP_522633  decreased coverage  0.000774064  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1441  CDS  NC_007908  1554718  1555206  489  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  YP_522705  decreased coverage  0.00418233  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1460  CDS  NC_007908  1569983  1571029  1047  twin-arginine translocation pathway signal  YP_522724  decreased coverage  0.00145692  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1461  CDS  NC_007908  1571071  1572600  1530  lytic transglycosylase, catalytic  YP_522725  decreased coverage  0.0063107  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1502  CDS  NC_007908  1615175  1615834  660  NADH-ubiquinone/plastoquinone oxidoreductase, chain 6  YP_522766  decreased coverage  0.00317987  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1572  CDS  NC_007908  1700935  1701573  639  OmpA/MotB  YP_522835  decreased coverage  0.00161285  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1767  CDS  NC_007908  1899429  1901579  2151  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_523027  decreased coverage  0.00167565  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1838  CDS  NC_007908  1976472  1977671  1200  extracellular ligand-binding receptor  YP_523095  decreased coverage  4.95341e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1839  CDS  NC_007908  1977711  1978373  663  GntR family transcriptional regulator  YP_523096  decreased coverage  9.0483e-07  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
 
Rfer_1903  CDS  NC_007908  2043329  2044369  1041  periplasmic binding protein/LacI transcriptional regulator  YP_523160  decreased coverage  0.00223597  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1930  CDS  NC_007908  2073875  2075311  1437  cbb3-type cytochrome c oxidase subunit I  YP_523187  decreased coverage  1.31874e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1971  CDS  NC_007908  2117679  2118032  354  peptidylprolyl isomerase, FKBP-type  YP_523227  decreased coverage  1.87591e-07  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1972  CDS  NC_007908  2118128  2118439  312  putative transcriptional regulator  YP_523228  decreased coverage  1.755e-07  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1973  CDS  NC_007908  2118716  2119003  288  putative orphan protein  YP_523229  decreased coverage  1.68926e-07  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_1998  CDS  NC_007908  2154582  2155571  990  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_523254  decreased coverage  0.0072677  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2095  CDS  NC_007908  2269128  2269871  744  UBA/THIF-type NAD/FAD binding protein  YP_523350  decreased coverage  0.00531734  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2119  CDS  NC_007908  2295148  2296278  1131  extracellular ligand-binding receptor  YP_523374  decreased coverage  0.00221988  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2121  CDS  NC_007908  2297499  2298713  1215  acetylornithine aminotransferase  YP_523376  decreased coverage  0.00994118  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2175  CDS  NC_007908  2373430  2375562  2133  excinuclease ABC subunit B  YP_523430  decreased coverage  0.00395254  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2195  CDS  NC_007908  2396076  2396360  285  30S ribosomal protein S18  YP_523450  decreased coverage  0.00559271  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2212  CDS  NC_007908  2419826  2422537  2712  pyruvate dehydrogenase subunit E1  YP_523467  decreased coverage  0.00159714  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2393  CDS  NC_007908  2636240  2637868  1629  long-chain-fatty-acid--CoA ligase  YP_523641  decreased coverage  0.0010153  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2436  CDS  NC_007908  2682854  2683306  453  pyridoxamine 5'-phosphate oxidase-related, FMN-binding  YP_523684  decreased coverage  0.000271809  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_2657  CDS  NC_007908  2924375  2925178  804  lytic transglycosylase, catalytic  YP_523904  decreased coverage  0.00887082  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_3081  CDS  NC_007908  3414292  3415542  1251  hypothetical protein  YP_524322  decreased coverage  0.00617658  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_3420  CDS  NC_007908  3804489  3805742  1254  cell division protein FtsZ  YP_524660  decreased coverage  8.81551e-06  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_3538  CDS  NC_007908  3933835  3935148  1314  hypothetical protein  YP_524774  decreased coverage  7.3392e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_3671  CDS  NC_007908  4090858  4092591  1734  extracellular solute-binding protein  YP_524902  decreased coverage  0.00462233  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_4084  CDS  NC_007908  4559330  4559938  609  PT repeat-containing protein  YP_525313  decreased coverage  9.01223e-06  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_4171  CDS  NC_007908  4641696  4642613  918  Citryl-CoA lyase  YP_525395  decreased coverage  0.00188553  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_4172    NC_007908  4643111  4643422  312      decreased coverage  0.00117454  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_4182    NC_007908  4652303  4652908  606      decreased coverage  0.00206474  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_4233  CDS  NC_007908  4700329  4700697  369  50S ribosomal protein L14  YP_525451  decreased coverage  9.45972e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_R0004  tRNA  NC_007908  1361114  1361190  77  tRNA-Pro    decreased coverage  3.93504e-05  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_R0016  tRNA  NC_007908  1701944  1702020  77  tRNA-Met    decreased coverage  0.00324355  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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Rfer_R0046  tRNA  NC_007908  4010877  4010951  75  tRNA-Thr    decreased coverage  0.00480232  n/a    Rhodoferax ferrireducens T118  Bacteria 
 
 
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