155 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ppro_0001  CDS  NC_008609  1353  1353  chromosomal replication initiation protein  YP_899700  decreased coverage  3.22878e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0002  CDS  NC_008609  1565  2686  1122  DNA polymerase III, beta subunit  YP_899701  decreased coverage  0.00126039  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0005  CDS  NC_008609  6243  8774  2532  DNA gyrase, A subunit  YP_899704  decreased coverage  0.000262861  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0013  CDS  NC_008609  15699  16607  909  chaperone DnaJ domain-containing protein  YP_899712  decreased coverage  2.7802e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0033  CDS  NC_008609  38130  39629  1500  oxaloacetate decarboxylase  YP_899731  decreased coverage  0.000614565  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0101  CDS  NC_008609  116480  116773  294  hypothetical protein  YP_899798  decreased coverage  3.37121e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0102  CDS  NC_008609  116775  117050  276  hypothetical protein  YP_899799  decreased coverage  6.16519e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0103  CDS  NC_008609  117022  117684  663  hypothetical protein  YP_899800  decreased coverage  7.41994e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0106  CDS  NC_008609  120219  121577  1359  transposase, IS4 family protein  YP_899803  decreased coverage  2.4097e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0114  CDS  NC_008609  130809  131687  879  RNA polymerase, sigma 32 subunit, RpoH  YP_899810  decreased coverage  0.00356807  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0162  CDS  NC_008609  168304  169407  1104  hypothetical protein  YP_899856  decreased coverage  3.51614e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0389  CDS  NC_008609  400709  401662  954  LAO/AO transport system ATPase  YP_900081  decreased coverage  1.46012e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0390  CDS  NC_008609  401675  401926  252  hypothetical protein  YP_900082  decreased coverage  8.06652e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0391  CDS  NC_008609  402021  402416  396  hypothetical protein  YP_900083  decreased coverage  8.42902e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0392  CDS  NC_008609  402419  402730  312  hypothetical protein  YP_900084  decreased coverage  1.01925e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0421  CDS  NC_008609  441617  441973  357  TraR/DksA family transcriptional regulator  YP_900113  decreased coverage  5.33151e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0422  CDS  NC_008609  442049  443395  1347  DNA repair protein RadA  YP_900114  decreased coverage  0.00757431  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0449  CDS  NC_008609  472424  472855  432  single-strand binding protein  YP_900139  decreased coverage  8.57397e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0478  CDS  NC_008609  500250  501806  1557  2-isopropylmalate synthase  YP_900168  decreased coverage  1.02603e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0479    NC_008609  501973  502167  195      decreased coverage  4.45396e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0528  CDS  NC_008609  562324  564654  2331  DNA topoisomerase I  YP_900217  decreased coverage  6.97651e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0562  CDS  NC_008609  597836  598606  771  hypothetical protein  YP_900251  decreased coverage  2.09401e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0610  CDS  NC_008609  646012  647829  1818  K+ potassium transporter  YP_900299  decreased coverage  4.34273e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0664  CDS  NC_008609  702581  703429  849  RNA polymerase, sigma 32 subunit, RpoH  YP_900353  decreased coverage  0.000163215  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0676  CDS  NC_008609  718529  718999  471  30S ribosomal protein S7  YP_900365  decreased coverage  0.00139219  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0709  CDS  NC_008609  737977  740193  2217  multi-sensor signal transduction histidine kinase  YP_900398  decreased coverage  6.23284e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0751  CDS  NC_008609  792675  793565  891  hypothetical protein  YP_900439  decreased coverage  0.00011277  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0757  CDS  NC_008609  801891  802157  267  hypothetical protein  YP_900445  decreased coverage  5.50546e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0779  CDS  NC_008609  827744  828754  1011  radical SAM domain-containing protein  YP_900467  decreased coverage  4.36315e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0788  CDS  NC_008609  837229  837909  681  hypothetical protein  YP_900476  decreased coverage  3.15572e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0789  CDS  NC_008609  837949  838263  315  hypothetical protein  YP_900477  decreased coverage  2.85782e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0874  CDS  NC_008609  918285  919643  1359  transposase, IS4 family protein  YP_900561  decreased coverage  4.60419e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0886  CDS  NC_008609  932297  933121  825  molybdopterin binding domain-containing protein  YP_900573  decreased coverage  5.3068e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_0971  CDS  NC_008609  1014665  1015231  567  hypothetical protein  YP_900657  decreased coverage  4.13362e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1022  CDS  NC_008609  1070699  1072057  1359  UDP-glucose 6-dehydrogenase  YP_900706  decreased coverage  9.93362e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1133  CDS  NC_008609  1176100  1176480  381  desulfoferrodoxin  YP_900815  decreased coverage  1.25009e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1172  CDS  NC_008609  1224272  1226605  2334  ribonuclease R  YP_900852  decreased coverage  0.000369652  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1189  CDS  NC_008609  1239584  1241623  2040  squalene-hopene cyclase  YP_900869  decreased coverage  0.000101315  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1228  CDS  NC_008609  1281295  1283166  1872  TonB-dependent receptor  YP_900907  decreased coverage  0.0002097  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1243  CDS  NC_008609  1300631  1301332  702  cobalamin (vitamin B12) biosynthesis CbiM protein  YP_900922  decreased coverage  3.23865e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1244  CDS  NC_008609  1301520  1302323  804  TonB family protein  YP_900923  decreased coverage  4.80451e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1265  CDS  NC_008609  1329030  1330187  1158  hypothetical protein  YP_900944  decreased coverage  0.00387767  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1287    NC_008609  1352326  1352682  357      decreased coverage  7.94729e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1309  CDS  NC_008609  1382427  1382714  288  hypothetical protein  YP_900987  decreased coverage  1.11505e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1310  CDS  NC_008609  1382768  1383028  261  hypothetical protein  YP_900988  decreased coverage  7.33795e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1358  CDS  NC_008609  1439524  1441404  1881  TonB-dependent receptor, plug  YP_901035  decreased coverage  0.00131062  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1363  CDS  NC_008609  1446772  1447119  348  hypothetical protein  YP_901038  decreased coverage  6.12234e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1374  CDS  NC_008609  1458332  1459759  1428  DEAD/DEAH box helicase domain-containing protein  YP_901048  decreased coverage  4.26275e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1382  CDS  NC_008609  1471039  1472808  1770  pepF/M3 family oligoendopeptidase  YP_901056  decreased coverage  2.09164e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1398  CDS  NC_008609  1491956  1492588  633  hypothetical protein  YP_901072  decreased coverage  0.000123271  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1431  CDS  NC_008609  1530627  1531295  669  cobalamin B12-binding domain-containing protein  YP_901105  decreased coverage  1.56586e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1455  CDS  NC_008609  1555893  1556972  1080  RelA/SpoT domain-containing protein  YP_901129  decreased coverage  1.11353e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1582  CDS  NC_008609  1689263  1690738  1476  anthranilate synthase component I  YP_901255  decreased coverage  4.05168e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1597  CDS  NC_008609  1707156  1707608  453  transcriptional regulator NrdR  YP_901270  decreased coverage  7.94729e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1598  CDS  NC_008609  1707605  1708072  468  CMP/dCMP deaminase, zinc-binding  YP_901271  decreased coverage  1.04146e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1602  CDS  NC_008609  1715752  1716954  1203  histidine kinase  YP_901275  decreased coverage  7.27154e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1603  CDS  NC_008609  1717030  1717497  468  hypothetical protein  YP_901276  decreased coverage  7.9438e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1619  CDS  NC_008609  1735446  1735781  336  hypothetical protein  YP_901292  decreased coverage  3.59889e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1639  CDS  NC_008609  1755718  1756797  1080  permease YjgP/YjgQ family protein  YP_901312  decreased coverage  2.66176e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1650  CDS  NC_008609  1770223  1770435  213  hypothetical protein  YP_901322  decreased coverage  1.2075e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1651  CDS  NC_008609  1770432  1770974  543  hypothetical protein  YP_901323  decreased coverage  6.31535e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1656  CDS  NC_008609  1775631  1775855  225  pilin domain-containing protein  YP_901328  decreased coverage  2.69442e-10  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1681  CDS  NC_008609  1799084  1800496  1413  glutamine synthetase, type I  YP_901353  decreased coverage  3.11602e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1682  CDS  NC_008609  1801120  1803207  2088  glutamine synthetase, catalytic region  YP_901354  decreased coverage  0.000249819  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1697  CDS  NC_008609  1823600  1824121  522  Ferritin, Dps family protein  YP_901368  decreased coverage  2.65061e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1703  CDS  NC_008609  1830434  1830895  462  hypothetical protein  YP_901374  decreased coverage  5.00319e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1705  CDS  NC_008609  1831147  1831428  282  hypothetical protein  YP_901375  decreased coverage  3.31281e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1706  CDS  NC_008609  1831432  1832811  1380  asparaginyl-tRNA synthetase  YP_901376  decreased coverage  0.00283051  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1743  CDS  NC_008609  1875627  1876547  921  malonyl CoA-acyl carrier protein transacylase  YP_901413  decreased coverage  3.13583e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1744  CDS  NC_008609  1876581  1877318  738  3-oxoacyl-(acyl-carrier-protein) reductase  YP_901414  decreased coverage  1.09109e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1752  CDS  NC_008609  1883735  1884256  522  hypothetical protein  YP_901422  decreased coverage  9.63449e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1763  CDS  NC_008609  1894032  1894595  564  elongation factor P  YP_901433  decreased coverage  0.00363755  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1774  CDS  NC_008609  1903660  1903923  264  30S ribosomal protein S20  YP_901444  decreased coverage  5.8734e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1775  CDS  NC_008609  1904073  1904363  291  hypothetical protein  YP_901445  decreased coverage  9.33651e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1776  CDS  NC_008609  1904360  1905331  972  fructose-1,6-bisphosphatase  YP_901446  decreased coverage  2.88763e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1807  CDS  NC_008609  1933103  1933873  771  cobalt ABC transporter, ATPase subunit  YP_901477  decreased coverage  7.2763e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1836  CDS  NC_008609  1976403  1977761  1359  transposase, IS4 family protein  YP_901506  decreased coverage  3.24968e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1871  CDS  NC_008609  2012572  2013363  792  DNA/RNA non-specific endonuclease  YP_901540  decreased coverage  1.05859e-06  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1872  CDS  NC_008609  2013360  2013644  285  histone family protein DNA-binding protein  YP_901541  decreased coverage  4.25439e-05  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1965  CDS  NC_008609  2110149  2110724  576  rubrerythrin  YP_901632  decreased coverage  0.00228469  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_1966  CDS  NC_008609  2110817  2111266  450  ferric uptake regulator family protein  YP_901633  decreased coverage  0.00359557  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2007  CDS  NC_008609  2155261  2156229  969  trans-hexaprenyltranstransferase  YP_901673  decreased coverage  0.00197396  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2044  CDS  NC_008609  2194026  2194799  774  30S ribosomal protein S2  YP_901710  decreased coverage  1.16198e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2052  CDS  NC_008609  2201157  2202029  873  hypothetical protein  YP_901718  decreased coverage  0.00300116  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2060  CDS  NC_008609  2207270  2209129  1860  potassium efflux system protein  YP_901726  decreased coverage  0.0034449  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2068  CDS  NC_008609  2218329  2221883  3555  DNA polymerase III, alpha subunit  YP_901734  decreased coverage  0.00797778  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2086  CDS  NC_008609  2244535  2245602  1068  hypothetical protein  YP_901752  decreased coverage  5.03379e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2120  CDS  NC_008609  2279829  2281187  1359  transposase, IS4 family protein  YP_901786  decreased coverage  2.61492e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2141  CDS  NC_008609  2296411  2297109  699  hypothetical protein  YP_901807  decreased coverage  1.26118e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2151  CDS  NC_008609  2313889  2314353  465  rubrerythrin  YP_901817  decreased coverage  1.69243e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2158  CDS  NC_008609  2325001  2326845  1845  carbon starvation protein CstA  YP_901824  decreased coverage  0.00428964  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2179  CDS  NC_008609  2351142  2352074  933  hypothetical protein  YP_901845  decreased coverage  2.99596e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2230  CDS  NC_008609  2404671  2405924  1254  acetate kinase  YP_901895  decreased coverage  8.35714e-08  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2231  CDS  NC_008609  2406015  2406812  798  TPR repeat-containing protein  YP_901896  decreased coverage  6.60918e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2241  CDS  NC_008609  2420993  2422351  1359  transposase, IS4 family protein  YP_901906  decreased coverage  4.18169e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2247  CDS  NC_008609  2426197  2426820  624  hypothetical protein  YP_901912  decreased coverage  9.4365e-09  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2307  CDS  NC_008609  2488792  2489256  465  translation initiation factor IF-3  YP_901972  decreased coverage  0.00282878  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2316  CDS  NC_008609  2502342  2503625  1284  MiaB-like tRNA modifying enzyme  YP_901981  decreased coverage  0.000240078  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2332  CDS  NC_008609  2518993  2520225  1233  major facilitator transporter  YP_901997  decreased coverage  1.58827e-07  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
Ppro_2378  CDS  NC_008609  2581386  2582015  630  bacteriophage CI repressor  YP_902042  decreased coverage  0.00068987  n/a    Pelobacter propionicus DSM 2379  Bacteria 
 
 
-
 
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