70 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sfum_0030  CDS  NC_008554  42222  43301  1080  molybdopterin oxidoreductase Fe4S4 region  YP_844168  decreased coverage  0.00062453  normal  0.73393  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0116  CDS  NC_008554  140763  141047  285  hypothetical protein  YP_844254  decreased coverage  7.83686e-06  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0131  CDS  NC_008554  161949  163694  1746  hypothetical protein  YP_844269  decreased coverage  0.000619516  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0213  CDS  NC_008554  249092  251395  2304  DNA topoisomerase I  YP_844349  decreased coverage  0.00304522  normal  0.312261  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0221  CDS  NC_008554  261500  263107  1608  hypothetical protein  YP_844357  decreased coverage  0.00277701  normal  0.0427708  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0275  CDS  NC_008554  329068  329865  798  hypothetical protein  YP_844411  decreased coverage  0.00475416  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0276  CDS  NC_008554  329911  330327  417  PadR-like family transcriptional regulator  YP_844412  decreased coverage  0.00724542  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0462  CDS  NC_008554  557623  557904  282  hypothetical protein  YP_844597  decreased coverage  9.64088e-06  normal  0.0239565  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0504  CDS  NC_008554  609455  610006  552  MucR family transcriptional regulator  YP_844639  decreased coverage  9.38261e-05  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0568  CDS  NC_008554  690939  692000  1062  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_844702  decreased coverage  5.04659e-05  normal  0.286887  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0733  CDS  NC_008554  898165  898368  204  cold-shock DNA-binding domain-containing protein  YP_844866  decreased coverage  5.85148e-05  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0769  CDS  NC_008554  943966  945036  1071  anthranilate phosphoribosyltransferase  YP_844902  decreased coverage  0.00198248  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0814  CDS  NC_008554  1007616  1008422  807  extracellular solute-binding protein  YP_844946  decreased coverage  0.00687374  normal  0.141124  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0947  CDS  NC_008554  1162318  1163250  933  two component LuxR family transcriptional regulator  YP_845078  decreased coverage  0.00385235  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_0991  CDS  NC_008554  1215472  1216851  1380  NLP/P60 protein  YP_845121  decreased coverage  0.000170293  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1153  CDS  NC_008554  1430198  1430965  768  pseudouridine synthase  YP_845281  decreased coverage  0.00899348  normal  0.812865  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1366  CDS  NC_008554  1701060  1702466  1407  glutamyl-tRNA synthetase  YP_845492  decreased coverage  0.000255518  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1367  CDS  NC_008554  1703239  1703748  510  hypothetical protein  YP_845493  decreased coverage  9.88863e-05  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1368  CDS  NC_008554  1703848  1704402  555  hypothetical protein  YP_845494  decreased coverage  0.000101542  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1398  CDS  NC_008554  1735304  1736968  1665  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_845524  decreased coverage  0.00125379  normal  0.336053  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1431  CDS  NC_008554  1771349  1773175  1827  hypothetical protein  YP_845557  decreased coverage  0.000524764  normal  0.16673  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1553  CDS  NC_008554  1915762  1916955  1194  elongation factor Tu  YP_845675  decreased coverage  0.000482346  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1554  CDS  NC_008554  1917025  1917336  312  30S ribosomal protein S10  YP_845676  decreased coverage  6.33059e-05  normal  0.961708  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1578  CDS  NC_008554  1929624  1929845  222  translation initiation factor IF-1  YP_845700  decreased coverage  1.64388e-05  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1644  CDS  NC_008554  2015608  2016639  1032  twin-arginine translocation pathway signal  YP_845766  normal  0.76466  decreased coverage  0.00621187  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1645  CDS  NC_008554  2016749  2018758  2010  response regulator receiver modulated CheB methylesterase  YP_845767  normal  decreased coverage  0.00749578  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1646  CDS  NC_008554  2018720  2018971  252  hypothetical protein  YP_845768  normal  decreased coverage  0.00502492  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1647  CDS  NC_008554  2019144  2019713  570  CheW protein  YP_845769  normal  decreased coverage  0.00542103  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1668  CDS  NC_008554  2046757  2047149  393  ribosomal protein S9  YP_845790  decreased coverage  1.54129e-05  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1744  CDS  NC_008554  2133914  2135056  1143  radical SAM domain-containing protein  YP_845866  hitchhiker  0.00743194  decreased coverage  0.000183859  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1788  CDS  NC_008554  2182923  2183948  1026  import inner membrane translocase, subunit Tim44  YP_845910  decreased coverage  8.25798e-05  normal  0.448103  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1840  CDS  NC_008554  2246777  2247424  648  hypothetical protein  YP_845960  decreased coverage  0.000912123  normal  0.201088  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1897  CDS  NC_008554  2315185  2315388  204  hypothetical protein  YP_846017  decreased coverage  5.40827e-05  hitchhiker  0.00334395  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1898  CDS  NC_008554  2315829  2316509  681  hypothetical protein  YP_846018  decreased coverage  0.000220114  hitchhiker  0.000798188  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1900  CDS  NC_008554  2317186  2319117  1932  hypothetical protein  YP_846020  decreased coverage  0.00116565  unclonable  1.51331e-05  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1928  CDS  NC_008554  2352335  2352679  345  hypothetical protein  YP_846048  decreased coverage  9.02805e-06  hitchhiker  0.00277759  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_1999  CDS  NC_008554  2448096  2449955  1860  fumarate reductase flavoprotein subunit  YP_846117  decreased coverage  0.000679701  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2000  CDS  NC_008554  2449966  2450631  666  fumarate reductase respiratory complex, transmembrane subunit  YP_846118  decreased coverage  0.000135298  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2099  CDS  NC_008554  2567583  2569220  1638  hypothetical protein  YP_846217  decreased coverage  0.00838169  normal  0.0305359  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2107  CDS  NC_008554  2578807  2579079  273  histone family protein DNA-binding protein  YP_846225  decreased coverage  8.44989e-06  hitchhiker  0.00906741  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2323  CDS  NC_008554  2854058  2855323  1266  hypothetical protein  YP_846439  decreased coverage  0.000821276  normal  0.699659  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2339  CDS  NC_008554  2873808  2874179  372  hypothetical protein  YP_846455  decreased coverage  0.000254701  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2345  CDS  NC_008554  2879688  2881316  1629  chaperonin GroEL  YP_846461  decreased coverage  0.000515051  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2498  CDS  NC_008554  3080861  3082003  1143  hypothetical protein  YP_846612  decreased coverage  0.00553555  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2499  CDS  NC_008554  3082141  3083286  1146  phage integrase family protein  YP_846613  decreased coverage  0.005662  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2525  CDS  NC_008554  3110667  3111968  1302  RpoD family RNA polymerase sigma factor  YP_846638  decreased coverage  0.00081419  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2526  CDS  NC_008554  3112248  3113234  987  TGS domain-containing protein  YP_846639  decreased coverage  0.00530169  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2689  CDS  NC_008554  3326976  3329402  2427  DNA gyrase, B subunit  YP_846802  unclonable  0.000692964  decreased coverage  0.000240377  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2690  CDS  NC_008554  3329633  3332074  2442  DNA gyrase, A subunit  YP_846803  normal  0.163226  decreased coverage  0.000223283  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2711  CDS  NC_008554  3352383  3352733  351  hypothetical protein  YP_846824  decreased coverage  0.00201146  normal  0.801369  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2773  CDS  NC_008554  3419503  3419748  246  hypothetical protein  YP_846886  decreased coverage  0.000305102  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2774  CDS  NC_008554  3420691  3421263  573  hypothetical protein  YP_846887  decreased coverage  0.000694592  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2775  CDS  NC_008554  3421384  3421635  252  hypothetical protein  YP_846888  decreased coverage  0.000325657  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2776  CDS  NC_008554  3421808  3423097  1290  thiamine biosynthesis protein ThiC  YP_846889  decreased coverage  0.00094064  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2800  CDS  NC_008554  3450108  3451043  936  hypothetical protein  YP_846913  decreased coverage  0.000369184  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2898  CDS  NC_008554  3575672  3576772  1101  ABC transporter related  YP_847010  normal  decreased coverage  0.00959734  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2899  CDS  NC_008554  3576837  3577874  1038  extracellular solute-binding protein  YP_847011  normal  decreased coverage  0.00994055  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2997  CDS  NC_008554  3702069  3702329  261  ribosomal protein S16  YP_847106  decreased coverage  2.65446e-06  normal  0.805241  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2998  CDS  NC_008554  3702370  3702603  234  hypothetical protein  YP_847107  decreased coverage  2.53135e-06  normal  0.811405  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_2999  CDS  NC_008554  3702596  3703126  531  16S rRNA processing protein RimM  YP_847108  decreased coverage  7.83686e-06  normal  0.831438  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3123  CDS  NC_008554  3836924  3838171  1248  glycosyl transferase family protein  YP_847231  decreased coverage  0.00523086  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3155  CDS  NC_008554  3871929  3873239  1311  peptidase M28  YP_847263  decreased coverage  0.000680764  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3156  CDS  NC_008554  3873307  3874209  903  hypothetical protein  YP_847264  decreased coverage  0.000321765  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3473  CDS  NC_008554  4240996  4242216  1221  cell division protein FtsA  YP_847579  decreased coverage  0.000668863  normal  0.0927017  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3476  CDS  NC_008554  4245905  4246780  876  heat shock protein DnaJ domain-containing protein  YP_847582  decreased coverage  0.00429307  normal  0.270651  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3577  CDS  NC_008554  4385105  4385815  711  GntR family transcriptional regulator  YP_847682  decreased coverage  2.18035e-05  normal  0.39883  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3733  CDS  NC_008554  4554943  4556082  1140  parallel beta-helix repeat-containing protein  YP_847838  decreased coverage  0.00966756  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3765  CDS  NC_008554  4606428  4607819  1392  two component, sigma54 specific, Fis family transcriptional regulator  YP_847869  decreased coverage  0.000821276  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3766  CDS  NC_008554  4608330  4609343  1014  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_847870  decreased coverage  0.00164257  normal  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
Sfum_3848  CDS  NC_008554  4698049  4698510  462  hypothetical protein  YP_847952  normal  decreased coverage  0.0074367  Syntrophobacter fumaroxidans MPOB  Bacteria 
 
 
-
 
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