81 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pcryo_0030  CDS  NC_007969  36776  37372  597  hypothetical protein  YP_579298  decreased coverage  1.64661e-05  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0066  CDS  NC_007969  74775  75467  693  dephospho-CoA kinase  YP_579334  decreased coverage  2.9391e-05  normal  0.557904  Psychrobacter cryohalolentis K5  Bacteria 
 
 
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Pcryo_0068  CDS  NC_007969  76476  77699  1224  type II secretion system protein  YP_579336  decreased coverage  0.000163403  normal  0.563347  Psychrobacter cryohalolentis K5  Bacteria 
 
 
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Pcryo_0123  CDS  NC_007969  145835  148096  2262  poly(A) polymerase  YP_579391  decreased coverage  0.00291654  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0159  CDS  NC_007969  189988  190323  336  hypothetical protein  YP_579427  decreased coverage  0.00439449  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0180  CDS  NC_007969  211393  212046  654  RDD domain-containing protein  YP_579448  decreased coverage  0.000223601  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0219  CDS  NC_007969  262434  263765  1332  diaminopimelate decarboxylase  YP_579487  decreased coverage  0.000590665  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0223  CDS  NC_007969  267264  268991  1728  sigma-54 (RpoN)  YP_579491  decreased coverage  0.00293155  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0229  CDS  NC_007969  272788  274449  1662  peptidase M48, Ste24p  YP_579497  decreased coverage  0.00038191  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0230  CDS  NC_007969  274524  274973  450  hypothetical protein  YP_579498  decreased coverage  1.39051e-05  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0231  CDS  NC_007969  275165  275380  216  30S ribosomal protein S21  YP_579499  decreased coverage  6.08143e-06  normal  0.965473  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0242  CDS  NC_007969  284172  284642  471  cytochrome c, class II  YP_579510  decreased coverage  0.00183316  normal  0.94125  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0278  CDS  NC_007969  331717  332898  1182  Acetyl-CoA C-acetyltransferase  YP_579546  decreased coverage  0.000883017  normal  0.145128  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0376  CDS  NC_007969  455538  456461  924  formamidopyrimidine-DNA glycosylase  YP_579643  normal  0.101632  decreased coverage  0.00992536  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0504  CDS  NC_007969  602277  603608  1332  preprotein translocase subunit SecY  YP_579771  decreased coverage  0.00015304  normal  0.032999  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0515  CDS  NC_007969  610479  611447  969  malonyl CoA-acyl carrier protein transacylase  YP_579782  hitchhiker  0.00154361  decreased coverage  0.00276258  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0516  CDS  NC_007969  611444  612172  729  3-oxoacyl-(acyl-carrier-protein) reductase  YP_579783  unclonable  1.97068e-06  decreased coverage  0.00245828  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0517  CDS  NC_007969  612485  612721  237  acyl carrier protein  YP_579784  unclonable  4.4528e-07  decreased coverage  0.00212296  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0518  CDS  NC_007969  613010  613516  507  LysM domain/BON superfamily protein  YP_579785  hitchhiker  0.000100124  decreased coverage  0.00200043  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0519  CDS  NC_007969  613651  614868  1218  4Fe-4S cluster binding  YP_579786  normal  0.0276415  decreased coverage  0.00221689  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0520  CDS  NC_007969  615091  616851  1761  hypothetical protein  YP_579787  normal  0.75104  decreased coverage  0.0023767  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0528  CDS  NC_007969  624414  625346  933  electron transfer flavoprotein, alpha subunit  YP_579795  decreased coverage  0.000381048  hitchhiker  0.00976807  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0529  CDS  NC_007969  625447  626241  795  tRNA/rRNA methyltransferase (SpoU)  YP_579796  decreased coverage  0.00106798  hitchhiker  0.00968427  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0620  CDS  NC_007969  737086  738399  1314  hypothetical protein  YP_579887  normal  0.583449  decreased coverage  0.00968427  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0664  CDS  NC_007969  786862  787377  516  peptidyl-prolyl cis-trans isomerase, cyclophilin type  YP_579931  decreased coverage  0.000119398  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0727  CDS  NC_007969  856187  856924  738  short-chain dehydrogenase/reductase SDR  YP_579994  decreased coverage  0.00978147  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0787  CDS  NC_007969  926645  927880  1236  LolC/E family lipoprotein releasing system, transmembrane protein  YP_580054  decreased coverage  0.000127174  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_0996  CDS  NC_007969  1187740  1188912  1173  polynucleotide adenylyltransferase region  YP_580261  decreased coverage  0.00961007  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1111  CDS  NC_007969  1337681  1338175  495  hypothetical protein  YP_580376  decreased coverage  0.00045373  normal  0.0993616  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1114  CDS  NC_007969  1343703  1344521  819  hypothetical protein  YP_580379  decreased coverage  0.00602952  normal  0.0178129  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1193  CDS  NC_007969  1445374  1446597  1224  bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein  YP_580458  decreased coverage  0.00131916  normal  0.487728  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1194  CDS  NC_007969  1446916  1447314  399  hypothetical protein  YP_580459  decreased coverage  0.00135563  normal  0.454518  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1440  CDS  NC_007969  1771506  1772915  1410  glutamine synthetase, type I  YP_580703  decreased coverage  0.00931108  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1496  CDS  NC_007969  1840348  1840887  540  hypothetical protein  YP_580759  decreased coverage  0.00826257  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1535  CDS  NC_007969  1886596  1887369  774  ferredoxin--NADP(+) reductase  YP_580798  decreased coverage  0.00112997  normal  0.440096  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1536  CDS  NC_007969  1887838  1888491  654  TetR family transcriptional regulator  YP_580799  decreased coverage  0.000773904  normal  0.689031  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1556  CDS  NC_007969  1909531  1910460  930  LysR family transcriptional regulator  YP_580817  decreased coverage  0.00011369  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1557  CDS  NC_007969  1910649  1911845  1197  aromatic amino acid aminotransferase  YP_580818  decreased coverage  0.00015304  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1580  CDS  NC_007969  1938322  1939545  1224  aromatic hydrocarbon degradation membrane protein  YP_580841  decreased coverage  0.0010116  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1581  CDS  NC_007969  1939766  1940047  282  putative SlyX protein  YP_580842  decreased coverage  6.50878e-05  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1637  CDS  NC_007969  2013698  2015122  1425  ErfK/YbiS/YcfS/YnhG  YP_580898  decreased coverage  0.000221895  hitchhiker  0.00347843  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1701  CDS  NC_007969  2105494  2106627  1134  aspartate-semialdehyde dehydrogenase  YP_580962  decreased coverage  0.00384018  normal  0.618182  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1838  CDS  NC_007969  2269038  2269988  951  hypothetical protein  YP_581099  decreased coverage  0.00402348  normal  0.482647  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1839  CDS  NC_007969  2270032  2270520  489  hypothetical protein  YP_581100  decreased coverage  0.00369136  normal  0.470716  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1854  CDS  NC_007969  2288445  2289257  813  putative DnaA family protein  YP_581115  decreased coverage  0.00022151  normal  0.136094  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1867  CDS  NC_007969  2306512  2307102  591  hypothetical protein  YP_581128  decreased coverage  0.000117301  normal  0.0395598  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1870  CDS  NC_007969  2308977  2310293  1317  phosphopyruvate hydratase  YP_581131  decreased coverage  0.000338918  hitchhiker  0.000814995  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1895  CDS  NC_007969  2341303  2342013  711  5-formyltetrahydrofolate cyclo-ligase  YP_581156  decreased coverage  0.00269887  normal  0.168906  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1914  CDS  NC_007969  2365108  2365773  666  TetR family transcriptional regulator  YP_581175  decreased coverage  1.66268e-05  normal  0.222991  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_1958  CDS  NC_007969  2416686  2417345  660  single-strand binding protein  YP_581219  decreased coverage  1.82579e-05  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2007  CDS  NC_007969  2467655  2470036  2382  primosomal protein N'  YP_581268  normal  decreased coverage  0.00478973  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2032  CDS  NC_007969  2497729  2498814  1086  undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase  YP_581293  decreased coverage  0.00303993  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2063  CDS  NC_007969  2532608  2532952  345  BolA-like protein  YP_581324  decreased coverage  0.00668109  normal  0.394391  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2064  CDS  NC_007969  2533027  2533386  360  hypothetical protein  YP_581325  decreased coverage  0.00623637  normal  0.396138  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2065  CDS  NC_007969  2533520  2533921  402  hypothetical protein  YP_581326  decreased coverage  0.00687144  normal  0.398117  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2104  CDS  NC_007969  2577498  2579600  2103  histidine kinase  YP_581365  decreased coverage  0.00890283  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2183  CDS  NC_007969  2683001  2683489  489  preprotein translocase subunit SecE  YP_581444  normal  0.0165979  decreased coverage  0.00917802  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2186  CDS  NC_007969  2687866  2688339  474  30S ribosomal protein S7  YP_581447  unclonable  9.75548e-07  decreased coverage  0.00846065  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2194  CDS  NC_007969  2697918  2699186  1269  UDP-N-acetylglucosamine 1-carboxyvinyltransferase  YP_581455  decreased coverage  0.00104695  normal  0.011339  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2195  CDS  NC_007969  2699304  2699555  252  BolA-like protein  YP_581456  normal  0.083862  decreased coverage  0.00880856  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2197  CDS  NC_007969  2700913  2701758  846  transport-associated  YP_581458  normal  0.0700443  decreased coverage  0.00932222  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2198  CDS  NC_007969  2701985  2702503  519  hypothetical protein  YP_581459  hitchhiker  0.00219221  decreased coverage  0.00807275  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2199  CDS  NC_007969  2702663  2703619  957  hypothetical protein  YP_581460  decreased coverage  0.00171139  decreased coverage  0.00853056  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2200  CDS  NC_007969  2703681  2704700  1020  PfkB  YP_581461  unclonable  4.68276e-06  decreased coverage  0.00888496  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2201  CDS  NC_007969  2704801  2706105  1305  O-acetylhomoserine/O-acetylserine sulfhydrylase  YP_581462  normal  0.0731028  decreased coverage  0.00932222  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2202  CDS  NC_007969  2706331  2707104  774  HesB/YadR/YfhF  YP_581463  normal  0.20209  decreased coverage  0.00866489  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2203  CDS  NC_007969  2707381  2708340  960  alpha/beta hydrolase fold  YP_581464  normal  0.0832977  decreased coverage  0.00859748  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2204  CDS  NC_007969  2708547  2709596  1050  bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase  YP_581465  normal  0.5504  decreased coverage  0.00753224  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2252  CDS  NC_007969  2762930  2764426  1497  amino acid carrier protein  YP_581513  decreased coverage  0.0078903  normal  0.0601991  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2299  CDS  NC_007969  2827730  2828785  1056  phenylalanyl-tRNA synthetase subunit alpha  YP_581560  decreased coverage  0.00069467  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2324  CDS  NC_007969  2853058  2854743  1686  histidine kinase  YP_581585  decreased coverage  0.00982982  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2352  CDS  NC_007969  2883885  2884808  924  hypothetical protein  YP_581613  normal  decreased coverage  0.00208565  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2353  CDS  NC_007969  2885249  2886139  891  hypothetical protein  YP_581614  normal  decreased coverage  0.00225651  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2456  CDS  NC_007969  3033614  3035557  1944  molecular chaperone DnaK  YP_581717  decreased coverage  0.00641905  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_2494  CDS  NC_007968  28031  29158  1128  hypothetical protein  YP_579256  decreased coverage  0.0036317  normal  0.931696  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0005  tRNA  NC_007969  211142  211218  77  tRNA-Arg    decreased coverage  3.74311e-05  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0006  tRNA  NC_007969  216675  216750  76  tRNA-Gln    decreased coverage  0.00260818  normal  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0008  tRNA  NC_007969  299721  299797  77  tRNA-Pro    decreased coverage  0.00816895  normal  0.604163  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0035  tRNA  NC_007969  1887509  1887595  87  tRNA-Leu    decreased coverage  0.000157921  normal  0.648742  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0045  tRNA  NC_007969  2306189  2306264  76  tRNA-Glu    decreased coverage  3.28054e-05  normal  0.0346347  Psychrobacter cryohalolentis K5  Bacteria 
 
 
-
 
Pcryo_R0047  tRNA  NC_007969  2683541  2683616  76  tRNA-Trp    hitchhiker  0.0072652  decreased coverage  0.00838785  Psychrobacter cryohalolentis K5  Bacteria 
 
 
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