56 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Suden_0066  CDS  NC_007575  71086  72894  1809  threonyl-tRNA synthetase  YP_392582  decreased coverage  2.16362e-06  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0082  CDS  NC_007575  89978  90670  693  cbb3-type cytochrome c oxidase subunit II  YP_392598  decreased coverage  0.000421523  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0083  CDS  NC_007575  90680  90883  204  cbb3-type cytochrome c oxidase subunit IV  YP_392599  decreased coverage  3.54018e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0084  CDS  NC_007575  90893  91816  924  Cbb3-type cytochrome c oxidase subunit III  YP_392600  decreased coverage  0.000832498  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0128  CDS  NC_007575  132509  133609  1101  Type II site-specific deoxyribonuclease  YP_392644  decreased coverage  0.000563078  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0264  CDS  NC_007575  277455  279218  1764  sulfate thiol esterase SoxB  YP_392780  decreased coverage  2.60669e-07  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0286  CDS  NC_007575  303711  304286  576  50S ribosomal protein L3  YP_392802  decreased coverage  0.00181466  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0287  CDS  NC_007575  304286  304900  615  50S ribosomal protein L4  YP_392803  decreased coverage  0.000945828  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0296  CDS  NC_007575  308208  308576  369  50S ribosomal protein L14  YP_392812  decreased coverage  0.00255818  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0297  CDS  NC_007575  308576  308806  231  50S ribosomal protein L24  YP_392813  decreased coverage  0.00211526  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0298  CDS  NC_007575  308809  309354  546  50S ribosomal protein L5  YP_392814  decreased coverage  0.00106254  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0345  CDS  NC_007575  343130  344329  1200  elongation factor Tu  YP_392861  decreased coverage  3.0513e-08  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0519  CDS  NC_007575  518921  519598  678  nitroreductase  YP_393034  decreased coverage  0.000999564  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0580  CDS  NC_007575  587895  589328  1434  D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase  YP_393094  decreased coverage  4.33477e-07  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0581  CDS  NC_007575  589321  589893  573  hypothetical protein  YP_393095  decreased coverage  1.84382e-08  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0582  CDS  NC_007575  589904  590881  978  lipopolysaccharide heptosyltransferase II  YP_393096  decreased coverage  6.38797e-10  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0640  CDS  NC_007575  650160  652643  2484  DNA gyrase subunit A  YP_393154  decreased coverage  0.00358145  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0725  CDS  NC_007575  748712  749113  402  BadM/Rrf2 family transcriptional regulator  YP_393239  decreased coverage  7.20218e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0767  CDS  NC_007575  793344  794306  963  C4-dicarboxylate transporter/malic acid transport protein  YP_393281  decreased coverage  0.000262712  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0768  CDS  NC_007575  794462  795502  1041  hypothetical protein  YP_393282  decreased coverage  0.000331369  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0774  CDS  NC_007575  800252  800938  687  filamentation induced by cAMP protein Fic  YP_393288  decreased coverage  9.13684e-06  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0775  CDS  NC_007575  800940  802622  1683  hypothetical protein  YP_393289  decreased coverage  3.01924e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0780  CDS  NC_007575  806382  809141  2760  isoleucyl-tRNA synthetase  YP_393294  decreased coverage  0.00333946  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0804  CDS  NC_007575  834315  835025  711  hypothetical protein  YP_393318  decreased coverage  0.00564078  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0815  CDS  NC_007575  846381  846653  273  plasmid stabilization system protein  YP_393329  decreased coverage  0.000215644  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0862  CDS  NC_007575  889210  889941  732  DSBA oxidoreductase  YP_393375  decreased coverage  0.00262563  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0919  CDS  NC_007575  955661  956290  630  HAD family hydrolase  YP_393432  decreased coverage  0.000975491  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0926  CDS  NC_007575  960861  961733  873  ABC transporter-related protein  YP_393439  decreased coverage  0.00057204  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_0945  CDS  NC_007575  985493  986764  1272  hypothetical protein  YP_393458  decreased coverage  5.23813e-09  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
 
Suden_1058  CDS  NC_007575  1122665  1123210  546  response regulator receiver domain-containing protein  YP_393571  decreased coverage  7.18409e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1275  CDS  NC_007575  1345167  1345709  543  hypothetical protein  YP_393788  decreased coverage  0.00390785  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1297  CDS  NC_007575  1368185  1369120  936  hypothetical protein  YP_393810  decreased coverage  3.58412e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1298  CDS  NC_007575  1369244  1371841  2598  nitrous-oxide reductase  YP_393811  decreased coverage  5.02464e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1304  CDS  NC_007575  1375915  1376820  906  NapH/MauN family ferredoxin-type protein  YP_393817  decreased coverage  0.000969125  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1305  CDS  NC_007575  1376824  1377462  639  ABC transporter-related protein  YP_393818  decreased coverage  0.000307697  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1311  CDS  NC_007575  1381506  1382630  1125  hypothetical protein  YP_393824  decreased coverage  0.0023679  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1312  CDS  NC_007575  1382715  1383344  630  CRP/FNR family transcriptional regulator  YP_393825  decreased coverage  0.000433355  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1365  CDS  NC_007575  1437024  1437683  660  two component transcriptional regulator  YP_393877  decreased coverage  0.00130586  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1378  CDS  NC_007575  1447780  1448682  903  GTP-binding protein Era  YP_393890  decreased coverage  3.47783e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1442  CDS  NC_007575  1510677  1511903  1227  Outer membrane efflux protein  YP_393954  decreased coverage  0.00437405  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1480  CDS  NC_007575  1552835  1553167  333  hypothetical protein  YP_393992  decreased coverage  0.00601746  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1515  CDS  NC_007575  1591246  1592070  825  quinol dehydrogenase periplasmic component  YP_394027  decreased coverage  2.52998e-10  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
 
Suden_1553  CDS  NC_007575  1625005  1626348  1344  transcription termination factor Rho  YP_394065  decreased coverage  0.000288549  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1647  CDS  NC_007575  1732864  1734006  1143  dihydropteroate synthase  YP_394159  decreased coverage  0.000944705  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1817  CDS  NC_007575  1899007  1900929  1923  NADH dehydrogenase subunit L  YP_394326  decreased coverage  8.15464e-08  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1860  CDS  NC_007575  1943493  1943936  444  hypothetical protein  YP_394369  decreased coverage  0.00347774  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1955  CDS  NC_007575  2041199  2041459  261  hypothetical protein  YP_394464  decreased coverage  4.90141e-11  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
 
Suden_1956  CDS  NC_007575  2041787  2041999  213  plasmid stabilization system protein  YP_394465  decreased coverage  2.96244e-11  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
 
Suden_1957  CDS  NC_007575  2042004  2042171  168  hypothetical protein  YP_394466  decreased coverage  2.32515e-11  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1958  CDS  NC_007575  2042214  2042456  243  hypothetical protein  YP_394467  decreased coverage  3.77235e-11  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1959  CDS  NC_007575  2042946  2043155  210  hypothetical protein  YP_394468  decreased coverage  3.92258e-11  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_1985  CDS  NC_007575  2066434  2068074  1641  nitrite reductase NirS  YP_394494  decreased coverage  4.93691e-05  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_2053  CDS  NC_007575  2138986  2140188  1203  aromatic hydrocarbon degradation protein  YP_394562  decreased coverage  4.52049e-06  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_2060  CDS  NC_007575  2151066  2152403  1338  twin-arginine translocation pathway signal  YP_394569  decreased coverage  3.89133e-09  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_R0012  tRNA  NC_007575  342504  342580  77  tRNA-Thr    decreased coverage  3.02559e-10  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Suden_R0015  tRNA  NC_007575  342965  343039  75  tRNA-Thr    decreased coverage  3.0839e-10  n/a    Sulfurimonas denitrificans DSM 1251  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>