57 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mhun_0075  CDS  NC_007796  95860  96720  861  formate/nitrite transporter  YP_501572  decreased coverage  0.00341405  normal  0.480537  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0212  CDS  NC_007796  237686  238564  879  binding-protein-dependent transport systems inner membrane component  YP_501703  decreased coverage  0.000142566  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0242  CDS  NC_007796  268280  269218  939  daunorubicin resistance ABC transporter ATP-binding subunit  YP_501733  decreased coverage  0.00751289  normal  0.894903  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0251  CDS  NC_007796  276896  277501  606  hypothetical protein  YP_501742  decreased coverage  0.00204328  normal  0.639009  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0392  CDS  NC_007796  434208  435641  1434  hypothetical protein  YP_501876  normal  0.296621  decreased coverage  0.00696234  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0508  CDS  NC_007796  589851  590168  318  hypothetical protein  YP_501988  decreased coverage  0.00258429  normal  0.458428  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0660  CDS  NC_007796  763098  764186  1089  cell division protein FtsZ  YP_502135  decreased coverage  1.71768e-09  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0693  CDS  NC_007796  802358  802810  453  hypothetical protein  YP_502165  decreased coverage  0.00231372  normal  0.0934854  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0743  CDS  NC_007796  858896  859978  1083  hypothetical protein  YP_502215  decreased coverage  0.00166302  normal  0.365369  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0759  CDS  NC_007796  874021  875226  1206  hypothetical protein  YP_502230  decreased coverage  0.00207585  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0771  CDS  NC_007796  885827  887017  1191  ammonium transporter  YP_502242  decreased coverage  0.00637331  normal  0.236804  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0784  CDS  NC_007796  900397  901410  1014  radical SAM family protein  YP_502255  decreased coverage  0.00132902  normal  0.107419  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0899  CDS  NC_007796  1004628  1006301  1674  hypothetical protein  YP_502368  decreased coverage  0.00051112  normal  0.102031  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0929  CDS  NC_007796  1030050  1031144  1095  histone deacetylase superfamily protein  YP_502398  decreased coverage  0.00399276  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0930  CDS  NC_007796  1031141  1032586  1446  hydantoinase/oxoprolinase  YP_502399  decreased coverage  0.00360521  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_0977  CDS  NC_007796  1095379  1096713  1335  peptidase U62, modulator of DNA gyrase  YP_502446  decreased coverage  0.00101033  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1002  CDS  NC_007796  1128540  1129766  1227  phage integrase  YP_502471  normal  0.606138  decreased coverage  0.00492215  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1003  CDS  NC_007796  1130675  1132060  1386  hypothetical protein  YP_502472  normal  decreased coverage  0.00542972  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1004  CDS  NC_007796  1132084  1132797  714  ABC transporter related  YP_502473  normal  decreased coverage  0.00470286  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1172  CDS  NC_007796  1330877  1332799  1923  type II secretion system protein E  YP_502639  decreased coverage  0.00958345  normal  0.662669  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1181  CDS  NC_007796  1343709  1344764  1056  V-type ATP synthase subunit C  YP_502648  decreased coverage  0.000792947  normal  0.370579  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1257  CDS  NC_007796  1429169  1430269  1101  hypothetical protein  YP_502720  decreased coverage  1.8752e-07  normal  0.209027  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1298  CDS  NC_007796  1478592  1481591  3000  ATPase  YP_502758  decreased coverage  0.00022527  normal  0.161034  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1312  CDS  NC_007796  1496661  1497134  474  hypothetical protein  YP_502771  normal  0.471081  decreased coverage  0.00388677  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1324  CDS  NC_007796  1509693  1510109  417  iron dependent repressor  YP_502783  normal  decreased coverage  0.00365508  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1325  CDS  NC_007796  1510306  1514370  4065  CoA enzyme activase  YP_502784  normal  0.222648  decreased coverage  0.00889318  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1326  CDS  NC_007796  1514393  1514812  420  hypothetical protein  YP_502785  decreased coverage  0.000406001  decreased coverage  0.00385616  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1327  CDS  NC_007796  1515013  1515501  489  PadR-like family transcriptional regulator  YP_502786  hitchhiker  0.00110327  decreased coverage  0.00407043  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1328  CDS  NC_007796  1515552  1516094  543  hypothetical protein  YP_502787  hitchhiker  0.00949818  decreased coverage  0.00397758  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1351  CDS  NC_007796  1546054  1547613  1560  hypothetical protein  YP_502810  decreased coverage  0.00559993  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1377  CDS  NC_007796  1575343  1576020  678  CRISPR-associated Cas5e family protein  YP_502836  decreased coverage  0.00215137  normal  0.352446  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1378  CDS  NC_007796  1576077  1577225  1149  CRISPR-associated Cse4 family protein  YP_502837  decreased coverage  0.0035432  normal  0.385916  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1401  CDS  NC_007796  1599604  1600194  591  ATPase  YP_502858  decreased coverage  0.00484603  normal  0.210269  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1542  CDS  NC_007796  1773234  1773434  201  4-oxalocrotonate tautomerase  YP_502992  decreased coverage  3.58699e-07  normal  0.197708  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1543  CDS  NC_007796  1773499  1774323  825  nitroreductase  YP_502993  decreased coverage  2.68728e-10  normal  0.225024  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1671    NC_007796  1892279  1892929  651      decreased coverage  0.00160784  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1679  CDS  NC_007796  1902457  1902759  303  hypothetical protein  YP_503126  decreased coverage  0.00343092  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1680  CDS  NC_007796  1902870  1903259  390  HEPN  YP_503127  decreased coverage  0.00395828  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1826  CDS  NC_007796  2062332  2062709  378  hypothetical protein  YP_503265  decreased coverage  2.39073e-08  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2189  CDS  NC_007796  2459345  2460961  1617  hydroxylamine reductase  YP_503613  decreased coverage  0.00125687  normal  0.781035  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2190  CDS  NC_007796  2461047  2461406  360  putative transcriptional regulator  YP_503614  decreased coverage  0.000426745  normal  0.636756  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2441  CDS  NC_007796  2708858  2711848  2991  PKD  YP_503861  decreased coverage  1.0419e-05  normal  0.547756  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2465  CDS  NC_007796  2737950  2738489  540  putative RNA-processing protein  YP_503884  decreased coverage  9.49184e-11  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2498  CDS  NC_007796  2775340  2776737  1398  PKD  YP_503917  decreased coverage  1.70724e-05  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2719  CDS  NC_007796  2990360  2992120  1761  periplasmic sensor signal transduction histidine kinase  YP_504133  decreased coverage  4.35656e-07  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2720  CDS  NC_007796  2992276  2992464  189  hypothetical protein  YP_504134  decreased coverage  2.97468e-10  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2721  CDS  NC_007796  2992561  2992842  282  DNA polymerase, beta-like region  YP_504135  decreased coverage  2.95369e-11  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2722  CDS  NC_007796  2992839  2993291  453  hypothetical protein  YP_504136  decreased coverage  7.17542e-11  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2859  CDS  NC_007796  3143197  3145761  2565  oligosaccharyl transferase, STT3 subunit  YP_504270  decreased coverage  0.000287651  normal  0.328764  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2860  CDS  NC_007796  3145786  3146079  294  hypothetical protein  YP_504271  decreased coverage  1.03192e-05  normal  0.710833  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2890  CDS  NC_007796  3172908  3173777  870  mevalonate kinase  YP_504301  decreased coverage  0.00676748  normal  0.719721  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2892  CDS  NC_007796  3174636  3175244  609  30S ribosomal protein S2  YP_504303  decreased coverage  0.00129354  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2893  CDS  NC_007796  3175231  3176439  1209  phosphopyruvate hydratase  YP_504304  decreased coverage  0.00235502  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2929  CDS  NC_007796  3204465  3205130  666  hypothetical protein  YP_504340  decreased coverage  1.25546e-10  normal  0.197708  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2937  CDS  NC_007796  3211316  3212305  990  DNA methylase N-4/N-6  YP_504348  decreased coverage  5.97198e-10  normal  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_3118  CDS  NC_007796  3391947  3392687  741  methyltransferase type 12  YP_504523  decreased coverage  0.0061861  hitchhiker  0.0013011  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_3138  CDS  NC_007796  3425391  3427697  2307  hypothetical protein  YP_504542  decreased coverage  4.69073e-06  hitchhiker  0.00590217  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>