37 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Nwi_0272  CDS  NC_007406  307106  308380  1275  phage integrase  YP_316891  decreased coverage  1.04155e-05  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_0436  CDS  NC_007406  491004  491744  741  hypothetical protein  YP_317055  decreased coverage  0.00284246  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_0735  CDS  NC_007406  821024  823315  2292  hypothetical protein  YP_317353  decreased coverage  7.0765e-05  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_0907  CDS  NC_007406  987283  989904  2622  hypothetical protein  YP_317521  decreased coverage  0.00680218  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1050  CDS  NC_007406  1145177  1146328  1152  cell cycle protein  YP_317664  decreased coverage  0.00180763  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1155  CDS  NC_007406  1266719  1267186  468  hypothetical protein  YP_317769  decreased coverage  0.00242921  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1253  CDS  NC_007406  1381386  1383179  1794  Type I restriction enzyme EcoAI specificity protein  YP_317866  decreased coverage  0.00376854  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1398  CDS  NC_007406  1523263  1524045  783  chaperone required for the assembly of F1-ATPase  YP_318011  decreased coverage  0.00511954  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1602  CDS  NC_007406  1750202  1750564  363  hypothetical protein  YP_318215  decreased coverage  0.00893381  normal  0.251749  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1603  CDS  NC_007406  1750536  1750742  207  hypothetical protein  YP_318216  decreased coverage  0.00673359  normal  0.247445  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1607  CDS  NC_007406  1755207  1755557  351  hypothetical protein  YP_318220  decreased coverage  0.00814592  normal  0.175771  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1639  CDS  NC_007406  1781949  1782251  303  hypothetical protein  YP_318252  decreased coverage  0.00750832  normal  0.935745  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1653  CDS  NC_007406  1797177  1799234  2058  DNA topoisomerase IV subunit B  YP_318266  decreased coverage  0.0034  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1718  CDS  NC_007406  1875939  1876304  366  ISBm1, transposase orfA  YP_318331  decreased coverage  0.000911297  normal  0.283895  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1760  CDS  NC_007406  1930981  1931472  492  NADH dehydrogenase  YP_318373  decreased coverage  0.00569729  normal  0.0708647  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1770  CDS  NC_007406  1940841  1941242  402  preprotein translocase subunit, YajC  YP_318383  normal  0.131308  decreased coverage  0.00406868  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1771  CDS  NC_007406  1941430  1942404  975  hypothetical protein  YP_318384  normal  0.338358  decreased coverage  0.00439264  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1772  CDS  NC_007406  1942544  1943905  1362  peptidase M23B  YP_318385  normal  0.306427  decreased coverage  0.00457712  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1773  CDS  NC_007406  1944054  1944707  654  protein-L-isoaspartate(D-aspartate) O-methyltransferase  YP_318386  normal  0.0590351  decreased coverage  0.00392698  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1774  CDS  NC_007406  1944968  1945348  381  response regulator receiver  YP_318387  normal  0.0498529  decreased coverage  0.00379005  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1775  CDS  NC_007406  1945414  1946181  768  stationary phase survival protein SurE  YP_318388  normal  0.100657  decreased coverage  0.00392698  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1776  CDS  NC_007406  1946505  1947998  1494  seryl-tRNA synthetase  YP_318389  normal  0.0925083  decreased coverage  0.00473675  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1777  CDS  NC_007406  1948106  1948915  810  sec-independent periplasmic protein translocase  YP_318390  normal  0.0307477  decreased coverage  0.00398359  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_1779  CDS  NC_007406  1949634  1949870  237  twin arginine translocase protein A  YP_318392  decreased coverage  0.00352153  hitchhiker  0.00879203  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2226  CDS  NC_007406  2420242  2421234  993  DNA replication initiation ATPase  YP_318832  decreased coverage  2.4836e-05  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2227  CDS  NC_007406  2421381  2421794  414  ROSMUCR transcriptional regulator  YP_318833  decreased coverage  6.58566e-05  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2347  CDS  NC_007406  2568962  2569162  201  hypothetical protein  YP_318953  decreased coverage  0.00811131  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2403  CDS  NC_007406  2624638  2625897  1260  O-antigen and teichoic acid export protein  YP_319009  decreased coverage  0.000847308  normal  0.232993  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2440  CDS  NC_007406  2661161  2663314  2154  RNA polymerase sigma factor RpoD  YP_319045  decreased coverage  0.00995293  normal  0.135691  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2668  CDS  NC_007406  2899607  2900695  1089  hypothetical protein  YP_319273  decreased coverage  0.00325621  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2780  CDS  NC_007406  3021083  3021415  333  30S ribosomal protein S16  YP_319385  decreased coverage  0.00569729  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2781  CDS  NC_007406  3021428  3021949  522  16S rRNA-processing protein RimM  YP_319386  decreased coverage  0.00810863  normal  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2888  CDS  NC_007406  3119427  3122336  2910  ribonucleotide-diphosphate reductase subunit alpha  YP_319490  normal  decreased coverage  0.00821454  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2890  CDS  NC_007406  3123918  3126233  2316  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  YP_319492  normal  decreased coverage  0.00709608  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2891  CDS  NC_007406  3126624  3127214  591  ErfK/YbiS/YcfS/YnhG  YP_319493  normal  0.740038  decreased coverage  0.00406868  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_2892  CDS  NC_007406  3127270  3128307  1038  extracellular solute-binding protein  YP_319494  normal  decreased coverage  0.0042428  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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Nwi_3058  CDS  NC_007406  3322455  3324197  1743  phage head-tail adaptor, putative  YP_319658  decreased coverage  0.00943131  normal  0.0427518  Nitrobacter winogradskyi Nb-255  Bacteria 
 
 
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