79 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Avin_02550  CDS  NC_012560  244501  245391  891  phosphonate transport system substrate-binding protein  YP_002797491  decreased coverage  0.00474506  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_03400  CDS  NC_012560  317748  318596  849  formamidopyrimidine-DNA glycosylase  YP_002797575  decreased coverage  0.00363262  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_03520  CDS  NC_012560  329386  330870  1485  peptidase M16-like protein  YP_002797587  decreased coverage  0.00585109  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_03630  CDS  NC_012560  344015  345298  1284  TRAP dicarboxylate transporter, large integral membrane subunit; DctM  YP_002797598  decreased coverage  0.00244507  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_04080  CDS  NC_012560  388420  390039  1620  malate:quinone oxidoreductase  YP_002797641  decreased coverage  0.00990069  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_05010  CDS  NC_012560  474174  474470  297  hypothetical protein  YP_002797730  decreased coverage  0.00191109  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_05340  CDS  NC_012560  513859  514824  966  Glycosyl transferase, family 2  YP_002797762  decreased coverage  0.000520172  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_05490  CDS  NC_012560  528948  529514  567  ADP-ribose diphosphatase NudE  YP_002797777  decreased coverage  0.00271926  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_06240  CDS  NC_012560  606807  607118  312  30S ribosomal protein S10  YP_002797850  decreased coverage  0.00394017  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_06250  CDS  NC_012560  607236  607838  603  50S ribosomal protein L3  YP_002797851  decreased coverage  0.00608659  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_06260  CDS  NC_012560  607853  608455  603  50S ribosomal protein L4  YP_002797852  decreased coverage  0.00260309  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_08430  CDS  NC_012560  800768  801982  1215  D-Alanyl-D-Alanine carboxypeptidase  YP_002798063  decreased coverage  0.000566286  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_08480  CDS  NC_012560  804331  806127  1797  thiamine pyrophosphate protein  YP_002798068  decreased coverage  0.00807055  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_09310  CDS  NC_012560  877940  879700  1761  siderophore biosynthesis protein, IucA/IucC family  YP_002798145  decreased coverage  0.00047621  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_10010  CDS  NC_012560  951836  953140  1305  DEAD/DEAH box ATP-dependent RNA helicase  YP_002798208  decreased coverage  0.00123792  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_10300  CDS  NC_012560  977372  977671  300  malonate decarboxylase subunit delta  YP_002798237  decreased coverage  0.00121331  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_10950  CDS  NC_012560  1046532  1047698  1167  alginate biosynthesis protein Alg44  YP_002798301  decreased coverage  0.00119266  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_11180  CDS  NC_012560  1065721  1068228  2508  cytochrome o ubiquinol oxidase, subunit I  YP_002798323  decreased coverage  0.00773028  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_12060  CDS  NC_012560  1158915  1159523  609  dephospho-CoA kinase  YP_002798406  decreased coverage  0.00111061  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_13910  CDS  NC_012560  1350913  1352304  1392  integral membrane permease/GntP family/citrate transporter  YP_002798583  decreased coverage  6.14873e-06  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_14720  CDS  NC_012560  1454145  1454672  528  hypothetical protein  YP_002798663  decreased coverage  0.00102497  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_14820  CDS  NC_012560  1465217  1465522  306  hypothetical protein  YP_002798673  decreased coverage  0.00124531  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_15630  CDS  NC_012560  1534176  1534775  600  intracellular septation protein A  YP_002798753  decreased coverage  0.00979591  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_16010  CDS  NC_012560  1581147  1582115  969  Glycosyl transferase, family 2  YP_002798791  decreased coverage  6.47727e-07  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_16060  CDS  NC_012560  1586045  1586305  261  hypothetical protein  YP_002798796  decreased coverage  0.00113675  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_16770  CDS  NC_012560  1662111  1663229  1119  ABC-2 type transporter, permease component  YP_002798865  decreased coverage  0.00841824  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_16840  CDS  NC_012560  1672985  1674007  1023  FabD/lysophospholipase-like protein  YP_002798873  decreased coverage  0.0025923  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_17380  CDS  NC_012560  1723900  1725684  1785  Acyl-CoA dehydrogenase  YP_002798926  decreased coverage  0.00730937  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_17920  CDS  NC_012560  1782008  1782775  768  hypothetical protein  YP_002798980  decreased coverage  0.00986232  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_18030  CDS  NC_012560  1793978  1794079  102  hypothetical protein  YP_002798991  decreased coverage  0.00249519  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_18710  CDS  NC_012560  1853506  1853769  264  hypothetical protein  YP_002799058  decreased coverage  0.00826862  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_18820  CDS  NC_012560  1866510  1867448  939  hypothetical protein  YP_002799069  decreased coverage  7.05752e-06  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_18920  CDS  NC_012560  1881167  1881391  225  hypothetical protein  YP_002799079  decreased coverage  0.00710484  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_19540  CDS  NC_012560  1948323  1948652  330  putative monovalent cation/H+ antiporter subunit C  YP_002799138  decreased coverage  0.00361637  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_19630  CDS  NC_012560  1953925  1955181  1257  leucine/isoleucine/valine transporter permease subunit  YP_002799147  decreased coverage  0.000188502  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_19730  CDS  NC_012560  1961366  1962106  741  H+-transporting two-sector ATPase, B/B subunit  YP_002799157  decreased coverage  0.00206816  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_20770  CDS  NC_012560  2068901  2070034  1134  Squalene/phytoene synthase  YP_002799253  decreased coverage  0.00645323  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_20970  CDS  NC_012560  2092457  2092981  525  Rhodanese-like protein  YP_002799273  decreased coverage  0.00660232  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_21230  CDS  NC_012560  2120116  2121339  1224  catecholate siderophore efflux pump, MFS_1 family  YP_002799299  decreased coverage  0.000768503  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_23100  CDS  NC_012560  2306319  2306570  252  outer membrane lipoprotein OprI  YP_002799473  decreased coverage  2.50367e-06  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_23340  CDS  NC_012560  2329960  2330697  738  uroporphyrin-III C-methyltransferase  YP_002799497  decreased coverage  0.00949185  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_26140  CDS  NC_012560  2669964  2671079  1116  ABC trasporter substrate binding protein  YP_002799765  decreased coverage  0.0025399  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_26430  CDS  NC_012560  2702185  2703267  1083  Periplasmic binding protein  YP_002799794  decreased coverage  0.0027542  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_26690  CDS  NC_012560  2734439  2736217  1779  Protein kinase  YP_002799820  decreased coverage  0.00328654  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_26900  CDS  NC_012560  2758851  2760149  1299  2-ketogluconate transporter  YP_002799840  decreased coverage  2.4176e-05  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_27910  CDS  NC_012560  2870959  2873043  2085  flagellar biosynthesis protein  YP_002799938  decreased coverage  0.00371527  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_29650  CDS  NC_012560  3063603  3065444  1842  oligopeptide ABC transporter, periplasmic substrate binding protein  YP_002800106  decreased coverage  0.000703906  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_29910  CDS  NC_012560  3094696  3095973  1278  polysaccharide biosynthesis protein  YP_002800132  decreased coverage  0.00762868  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_30300  CDS  NC_012560  3141294  3142151  858  cell division protein ZipA  YP_002800170  decreased coverage  0.00228143  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_30580  CDS  NC_012560  3166927  3167841  915  acetaldehyde dehydrogenase  YP_002800198  decreased coverage  4.81104e-06  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_33060  CDS  NC_012560  3380331  3380852  522  adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase  YP_002800436  decreased coverage  0.000335231  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_33100  CDS  NC_012560  3383592  3384500  909  cobalamin biosynthesis protein  YP_002800440  decreased coverage  0.00042631  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_33120  CDS  NC_012560  3385173  3386465  1293  cobyrinic acid a,c-diamide synthase  YP_002800442  decreased coverage  0.0085144  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_36430  CDS  NC_012560  3707336  3707974  639  hypothetical protein  YP_002800765  decreased coverage  7.36675e-07  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_36440  CDS  NC_012560  3708196  3708903  708  hypothetical protein  YP_002800766  decreased coverage  2.22853e-06  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_37060  CDS  NC_012560  3762098  3764347  2250  RelA/SpoT protein  YP_002800827  decreased coverage  0.00582579  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_37840  CDS  NC_012560  3827319  3828644  1326  hypothetical protein  YP_002800903  decreased coverage  0.00426998  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_39120  CDS  NC_012560  3962913  3964157  1245  hypothetical protein  YP_002801027  decreased coverage  0.00513866  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_39840  CDS  NC_012560  4034859  4035119  261  hypothetical protein  YP_002801098  decreased coverage  0.00968071  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_40910  CDS  NC_012560  4126723  4129149  2427  ferripyoverdine receptor  YP_002801201  decreased coverage  0.00205881  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_43280  CDS  NC_012560  4369636  4369815  180  hypothetical protein  YP_002801424  decreased coverage  0.000869692  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_43390  CDS  NC_012560  4381908  4383044  1137  Glycerate kinase  YP_002801435  decreased coverage  0.00316811  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_43520  CDS  NC_012560  4397580  4398647  1068  amino acid ABC transporter-like protein  YP_002801448  decreased coverage  0.00847282  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_43610  CDS  NC_012560  4405960  4407510  1551  ABC transporter  YP_002801457  decreased coverage  0.00213135  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_44620  CDS  NC_012560  4514223  4515398  1176  FAD dependent oxidoreductase  YP_002801555  decreased coverage  0.00918084  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_45090  CDS  NC_012560  4567622  4569370  1749  potassium/proton antiporter  YP_002801599  decreased coverage  0.00181989  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_45990  CDS  NC_012560  4675489  4676688  1200  tyrosyl-tRNA synthetase  YP_002801683  decreased coverage  2.1558e-05  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_46530  CDS  NC_012560  4726010  4726315  306  hypothetical protein  YP_002801733  decreased coverage  0.00204411  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_46540  CDS  NC_012560  4726347  4726877  531  hypothetical protein  YP_002801734  decreased coverage  0.00219572  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_48120  CDS  NC_012560  4876421  4877533  1113  Glycerophosphoryl diester phosphodiesterase  YP_002801891  decreased coverage  0.000260107  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_48400  CDS  NC_012560  4903250  4904188  939  hypothetical protein  YP_002801917  decreased coverage  0.00598917  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_49490  CDS  NC_012560  5011929  5012906  978  Uncharacterized protein family UPF0065  YP_002802019  decreased coverage  0.00178438  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_49650  CDS  NC_012560  5030213  5030446  234  hypothetical protein  YP_002802033  decreased coverage  7.9196e-09  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_50560  CDS  NC_012560  5121122  5121745  624  hydrogenase expression/formation protein, HoxM  YP_002802119  decreased coverage  0.00480221  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_50930  CDS  NC_012560  5162986  5163702  717  Electron transport complex, RnfABCDGE type, E subunit  YP_002802155  decreased coverage  0.000773379  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_51690  CDS  NC_012560  5258354  5258716  363  hypothetical protein  YP_002802221  decreased coverage  0.00189742  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_51940  CDS  NC_012560  5298757  5300289  1533  extracellular solute-binding protein  YP_002802244  decreased coverage  0.000130332  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_55030  rRNA  NC_012560  1377958  1379492  1535  16S ribosomal RNA    decreased coverage  0.00361459  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Avin_65020  ncRNA  NC_012560  400319  400483  165  PrrB_RsmZ sRNA family; predicted by Infernal    decreased coverage  6.04533e-05  n/a    Azotobacter vinelandii DJ  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>