104 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
STER_0075  CDS  NC_008532  62721  63275  555  3-methyladenine DNA glycosylase  YP_819641  decreased coverage  2.23645e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0107  CDS  NC_008532  84991  85461  471  hypothetical protein  YP_819653  decreased coverage  0.00969269  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0133    NC_008532  109545  109934  390      decreased coverage  4.90253e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0187  CDS  NC_008532  152849  154039  1191  cyclopropane-fatty-acyl-phospholipid synthase  YP_819706  decreased coverage  0.00117459  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0207  CDS  NC_008532  174891  176054  1164  major facilitator superfamily permease  YP_819724  decreased coverage  0.000553672  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0258  CDS  NC_008532  220229  220561  333  hypothetical protein  YP_819768  decreased coverage  2.8904e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0261  CDS  NC_008532  224055  224207  153  50S ribosomal protein L33  YP_819771  decreased coverage  6.34475e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0262  CDS  NC_008532  224216  224392  177  preprotein translocase subunit SecE  YP_819772  decreased coverage  6.68488e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0263  CDS  NC_008532  224589  225128  540  transcription antitermination protein NusG  YP_819773  decreased coverage  2.7375e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0280  CDS  NC_008532  240252  240584  333  cell division protein GpsB  YP_819787  decreased coverage  3.92973e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0356  CDS  NC_008532  312381  312860  480  transcriptional regulator NrdR  YP_819854  decreased coverage  1.6324e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0427  CDS  NC_008532  373000  373791  792  enoyl-CoA hydratase  YP_819911  decreased coverage  1.82955e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0429  CDS  NC_008532  374329  375291  963  3-oxoacyl-(acyl carrier protein) synthase III  YP_819913  decreased coverage  0.000771276  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0435  CDS  NC_008532  379637  380125  489  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit  YP_819919  decreased coverage  2.11037e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0449  CDS  NC_008532  395383  395925  543  hypothetical protein  YP_819930  decreased coverage  2.89052e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0509  CDS  NC_008532  457889  458506  618  hypothetical protein  YP_819983  decreased coverage  4.15795e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0515  CDS  NC_008532  463281  463478  198  F0F1 ATP synthase subunit C  YP_819989  decreased coverage  3.03287e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0521  CDS  NC_008532  467769  469175  1407  F0F1 ATP synthase subunit beta  YP_819995  decreased coverage  0.00662178  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0524  CDS  NC_008532  471406  472602  1197  elongation factor Tu  YP_819998  decreased coverage  0.00168014  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0537  CDS  NC_008532  482049  483197  1149  N-acetylglucosamine-6-phosphate deacetylase  YP_820010  decreased coverage  0.000610642  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0555  CDS  NC_008532  499820  500341  522  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_820026  decreased coverage  0.00053377  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0566  CDS  NC_008532  512115  512252  138  hypothetical protein  YP_820035  decreased coverage  2.27032e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0616  CDS  NC_008532  559887  560753  867  hypothetical protein  YP_820080  decreased coverage  0.00618087  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0635  CDS  NC_008532  579598  580620  1023  branched-chain amino acid aminotransferase  YP_820098  decreased coverage  0.000185267  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0636  CDS  NC_008532  580739  580969  231  hypothetical protein  YP_820099  decreased coverage  9.54002e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0650  CDS  NC_008532  591553  591783  231  hypothetical protein  YP_820108  decreased coverage  2.19992e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0672  CDS  NC_008532  609192  609338  147  50S ribosomal protein L33  YP_820127  decreased coverage  7.2872e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0684  CDS  NC_008532  620012  621316  1305  phosphopyruvate hydratase  YP_820138  decreased coverage  0.00725906  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0711  CDS  NC_008532  647690  648013  324  hypothetical protein  YP_820163  decreased coverage  0.000727859  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0732  CDS  NC_008532  665808  666575  768  hypothetical protein  YP_820184  decreased coverage  1.9571e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0790  CDS  NC_008532  722485  723273  789  putative glutathione S-transferase YghU  YP_820236  decreased coverage  1.88448e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0850  CDS  NC_008532  783500  783736  237  30S ribosomal protein S20  YP_820287  decreased coverage  1.16553e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0851  CDS  NC_008532  783805  784725  921  pantothenate kinase  YP_820288  decreased coverage  0.00289921  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0862  CDS  NC_008532  796256  796738  483  hypothetical protein  YP_820296  decreased coverage  0.00688633  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0880  CDS  NC_008532  810319  810519  201  cold shock protein  YP_820312  decreased coverage  3.5682e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0925  CDS  NC_008532  855726  856385  660  DNA-binding response regulator  YP_820346  decreased coverage  5.02161e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0956  CDS  NC_008532  883616  884251  636  phosphatase, putative  YP_820371  decreased coverage  1.03613e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0967  CDS  NC_008532  893544  893759  216  hypothetical protein  YP_820380  decreased coverage  1.45119e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0968  CDS  NC_008532  893758  894531  774  dihydroorotate dehydrogenase electron transfer subunit  YP_820381  decreased coverage  2.78582e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1003  CDS  NC_008532  925149  925367  219  hypothetical protein  YP_820409  decreased coverage  6.46239e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1005  CDS  NC_008532  926207  927517  1311  rRNA methyltransferase, putative  YP_820411  decreased coverage  0.00439767  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1013  CDS  NC_008532  935410  936480  1071  site-specific tyrosine recombinase XerS  YP_820419  decreased coverage  0.00257725  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1014  CDS  NC_008532  936705  937694  990  lipoate-protein ligase  YP_820420  decreased coverage  0.00464071  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1028  CDS  NC_008532  951420  952373  954  ABC-type Fe3+-siderophore transport system, permease component  YP_820433  decreased coverage  0.000116719  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1050  CDS  NC_008532  975018  976154  1137  permease  YP_820449  decreased coverage  0.000509244  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1099  CDS  NC_008532  1015527  1016009  483  7,8-dihydro-8-oxoguanine-triphosphatase  YP_820488  decreased coverage  2.30167e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1117  CDS  NC_008532  1032360  1033127  768  ABC-type polar amino acid transport system, ATPase component  YP_820506  decreased coverage  1.86599e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1121  CDS  NC_008532  1035422  1036303  882  competence associated membrane nuclease  YP_820510  decreased coverage  0.000833085  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1164  CDS  NC_008532  1073225  1074244  1020  6-phosphofructokinase  YP_820551  decreased coverage  0.00769395  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1167  CDS  NC_008532  1078482  1079072  591  isopropylmalate isomerase small subunit  YP_820554  decreased coverage  0.000149275  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1180  CDS  NC_008532  1090376  1090822  447  transcriptional repressor protein, putative  YP_820566  decreased coverage  0.000314701  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1186  CDS  NC_008532  1094889  1094993  105  hypothetical protein  YP_820572  decreased coverage  0.000929494  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1187  CDS  NC_008532  1095120  1095764  645  endonuclease III, DNA repair  YP_820573  decreased coverage  0.00300969  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1195  CDS  NC_008532  1102873  1104111  1239  GTP-binding protein  YP_820581  decreased coverage  0.00118595  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1214  CDS  NC_008532  1119433  1120206  774  HAD family sugar phosphatase  YP_820599  decreased coverage  1.2407e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1236  CDS  NC_008532  1139614  1140333  720  alpha/beta fold family hydrolase  YP_820620  decreased coverage  0.000165889  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1247  CDS  NC_008532  1154146  1154370  225  glutaredoxin  YP_820631  decreased coverage  4.66466e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1274  CDS  NC_008532  1184605  1185681  1077  aspartate-semialdehyde dehydrogenase  YP_820653  decreased coverage  0.000518903  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1308  CDS  NC_008532  1214105  1214863  759  peptide ABC transporter ATPase  YP_820683  decreased coverage  1.99498e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1318  CDS  NC_008532  1225323  1226708  1386  amino acid transporter  YP_820690  decreased coverage  0.00693769  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1331  CDS  NC_008532  1240323  1240997  675  type II restriction-modification system modification subunit  YP_820702  decreased coverage  7.10469e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1333  CDS  NC_008532  1242962  1243306  345  hypothetical protein  YP_820704  decreased coverage  4.95168e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1334  CDS  NC_008532  1243619  1243777  159  hypothetical protein  YP_820705  decreased coverage  1.42246e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1340  CDS  NC_008532  1247432  1247701  270  hypothetical protein  YP_820710  decreased coverage  0.00174648  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1341  CDS  NC_008532  1247829  1248017  189  hypothetical protein  YP_820711  decreased coverage  0.000374823  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1345  CDS  NC_008532  1250208  1250567  360  hypothetical protein  YP_820715  decreased coverage  0.00230339  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1368  CDS  NC_008532  1275966  1277012  1047  aldose 1-epimerase  YP_820737  decreased coverage  0.00941348  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1400  CDS  NC_008532  1309417  1310235  819  HAD superfamily hydrolase  YP_820760  decreased coverage  7.50549e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1421  CDS  NC_008532  1329610  1330506  897  ribosomal large subunit pseudouridine synthase, RluD subfamily  YP_820779  decreased coverage  0.00665782  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1425  CDS  NC_008532  1333019  1333990  972  ribose-phosphate pyrophosphokinase  YP_820783  decreased coverage  0.000869959  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1440  CDS  NC_008532  1348153  1348869  717  cell wall biosynthesis glycosyltransferase  YP_820798  decreased coverage  1.77815e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1458  CDS  NC_008532  1366245  1366685  441  hypothetical protein  YP_820815  decreased coverage  5.76103e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1472  CDS  NC_008532  1375978  1376868  891  DMT family permease  YP_820827  decreased coverage  0.00237302  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1508  CDS  NC_008532  1412735  1413562  828  3'-exo-deoxyribonuclease  YP_820857  decreased coverage  0.000904963  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1509  CDS  NC_008532  1413636  1414115  480  hypothetical protein  YP_820858  decreased coverage  9.20672e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1518  CDS  NC_008532  1421836  1422381  546  GNAT family acetyltransferase  YP_820867  decreased coverage  3.4512e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1541  CDS  NC_008532  1444359  1445036  678  ABC-type amino acid transport system, permease component  YP_820889  decreased coverage  0.00154011  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1553  CDS  NC_008532  1456247  1456813  567  anthranilate synthase component II  YP_820901  decreased coverage  4.67195e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1570  CDS  NC_008532  1472144  1472935  792  hypothetical protein  YP_820916  decreased coverage  0.00112877  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1581  CDS  NC_008532  1482511  1482864  354  hypothetical protein  YP_820927  decreased coverage  5.88564e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1588  CDS  NC_008532  1487540  1487704  165  hypothetical protein  YP_820934  decreased coverage  6.35017e-08  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1599  CDS  NC_008532  1495864  1496649  786  transcriptional repressor CodY  YP_820943  decreased coverage  0.00104108  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1649  CDS  NC_008532  1537178  1537915  738  response regulator  YP_820990  decreased coverage  9.60447e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1678  CDS  NC_008532  1565524  1566255  732  ABC-type multidrug transport system, ATPase component  YP_821018  decreased coverage  0.00600162  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1684  CDS  NC_008532  1575812  1576258  447  response regulator  YP_821023  decreased coverage  9.29378e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1689  CDS  NC_008532  1578700  1580085  1386  Cof family protein  YP_821028  decreased coverage  0.00487865  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1698  CDS  NC_008532  1587374  1588354  981  abortive infection bacteriophage resistance protein  YP_821037  decreased coverage  0.00541232  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1723  CDS  NC_008532  1613527  1614471  945  Mg2+ and Co2+ transporter  YP_821060  decreased coverage  0.00210024  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1728  CDS  NC_008532  1617148  1617438  291  30S ribosomal protein S6  YP_821065  decreased coverage  4.19207e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1752  CDS  NC_008532  1640325  1640699  375  glutamine synthetase transcriptional regulator  YP_821088  decreased coverage  0.000396501  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1764  CDS  NC_008532  1651031  1651444  414  30S ribosomal protein S12  YP_821099  decreased coverage  1.6487e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1798  CDS  NC_008532  1681895  1682320  426  50S ribosomal protein L11  YP_821125  decreased coverage  7.82975e-06  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1819  CDS  NC_008532  1697930  1698448  519  cytidine/deoxycytidylate deaminase family protein, putative  YP_821142  decreased coverage  1.74201e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1823  CDS  NC_008532  1700048  1701079  1032  transporter component  YP_821146  decreased coverage  0.00974172  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1824  CDS  NC_008532  1701217  1701840  624  EMAP domain-containing protein  YP_821147  decreased coverage  6.78669e-05  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1825  CDS  NC_008532  1701850  1702164  315  thioredoxin  YP_821148  decreased coverage  0.000186182  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1869  CDS  NC_008532  1747506  1748240  735  hypothetical protein  YP_821184  decreased coverage  0.000122959  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1883  CDS  NC_008532  1756904  1757269  366  30S ribosomal protein S13  YP_821193  decreased coverage  5.66138e-07  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1884  CDS  NC_008532  1757287  1757403  117  50S ribosomal protein L36  YP_821194  decreased coverage  3.86083e-08  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1894  CDS  NC_008532  1762773  1762958  186  30S ribosomal protein S14  YP_821204  decreased coverage  7.9988e-08  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
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