117 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
PICST_12953  CDS  NC_009042  2176483  2177205  723  predicted protein  XP_001383180  decreased coverage  0.000550926  normal  0.10545  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_13009  CDS  NC_009044  1443380  1443934  555  predicted protein  XP_001384236  decreased coverage  5.81836e-08  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_16270  CDS  NC_009042  2486946  2488982  2037  conserved hypothetical protein  XP_001382705  decreased coverage  0.000103062  normal  0.0590596  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_22565  CDS  NC_009045  602707  603201  495  predicted protein  XP_001384783  decreased coverage  0.0043227  normal  0.0742578  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_28199  CDS  NC_009068  607037  607372  336  predicted protein  XP_001387348  normal  decreased coverage  0.00737399  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_28468  CDS  NC_009068  1304044  1305132  1089  quinone oxidoreductase  XP_001387894  decreased coverage  0.00993002  normal  0.0416913  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_29193  CDS  NC_009068  3193794  3194984  1191  predicted protein  XP_001387182  decreased coverage  0.00865439  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_29938  CDS  NC_009042  1546427  1548349  1923  predicted protein  XP_001383069  decreased coverage  0.00383376  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30273  CDS  NC_009042  2421665  2422042  378  predicted protein  XP_001383216  decreased coverage  0.00180649  normal  0.873311  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30524  CDS  NC_009043  280626  282068  1443  predicted protein  XP_001383686  decreased coverage  0.000419629  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30557  CDS  NC_009043  378662  379171  510  predicted protein  XP_001383350  normal  decreased coverage  0.00983902  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30689  CDS  NC_009043  683021  685348  2328  predicted protein  XP_001383766  decreased coverage  0.00144758  normal  0.461418  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30748  CDS  NC_009043  843586  843960  375  predicted protein  XP_001383443  decreased coverage  0.00321059  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_30770  CDS  NC_009043  899252  901531  2280  Fungal transcriptional regulatory protein  XP_001383454  decreased coverage  0.00132045  normal  0.491736  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31025  CDS  NC_009043  1549316  1550323  1008  predicted protein  XP_001383916  decreased coverage  0.000912202  normal  0.0161556  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31039  CDS  NC_009043  1590341  1592263  1923  predicted protein  XP_001383589  decreased coverage  1.83375e-05  normal  0.324549  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31261  CDS  NC_009044  350827  351714  888  predicted protein  XP_001384366  decreased coverage  0.00981052  normal  0.533075  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31408  CDS  NC_009044  726782  727147  366  predicted protein  XP_001384435  decreased coverage  0.00624503  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31554  CDS  NC_009044  1090925  1093421  2497  replication factor ATPase  XP_001384164  decreased coverage  0.000494738  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31639  CDS  NC_009044  1324576  1326135  1560  allantoate permease  XP_001384207  normal  0.338334  decreased coverage  1.17277e-06  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31704  CDS  NC_009044  1480684  1482606  1923  mitochondrial RNA helicase  XP_001384238  decreased coverage  0.00121417  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_31752  CDS  NC_009044  1600924  1601859  936  predicted protein  XP_001384611  normal  decreased coverage  0.00893069  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32127  CDS  NC_009045  739442  746536  7095  cell cycle checkpoint protein  XP_001384809  normal  decreased coverage  0.00191937  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32496  CDS  NC_009045  1654381  1654812  432  predicted protein  XP_001385013  normal  decreased coverage  0.00223885  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32630  CDS  NC_009046  274767  276587  1821  predicted protein  XP_001385391  decreased coverage  0.000222385  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32634  CDS  NC_009046  281772  283595  1824  multidrug-resistance transporte  XP_001385394  decreased coverage  0.0035637  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32690  CDS  NC_009046  408113  408781  669  Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated protein VPS32)  XP_001385432  decreased coverage  0.00479925  normal  0.0750139  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32879  CDS  NC_009046  852198  854054  1857  predicted protein  XP_001385862  normal  0.134484  decreased coverage  0.00551311  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32922  CDS  NC_009046  971788  973050  1263  predicted protein  XP_001385547  decreased coverage  0.0082388  normal  0.91244  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32931  CDS  NC_009046  1005397  1006272  876  predicted protein  XP_001385549  decreased coverage  0.00295624  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_32979  CDS  NC_009046  1128647  1129840  1194  predicted protein  XP_001385570  normal  0.116223  decreased coverage  0.00804047  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33305  CDS  NC_009047  268360  269503  1144  retrotransposon  XP_001386071  decreased coverage  0.000145871  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33381  CDS  NC_009047  466998  467405  408  predicted protein  XP_001386108  normal  decreased coverage  0.000249322  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33387  CDS  NC_009047  479054  479869  816  predicted protein  XP_001386111  normal  0.274486  decreased coverage  0.000361715  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33838  CDS  NC_009048  593837  596504  2668  predicted protein  XP_001386707  decreased coverage  0.0040379  normal  0.128443  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33851  CDS  NC_009048  618185  619795  1611  Serine/threonine-protein kinase STE7 homolog  XP_001386712  decreased coverage  0.00756522  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_33967  CDS  NC_009048  887154  888992  1839  Ferric reductase transmembrane component 7 (Ferric-chelate reductase 7)  XP_001386587  decreased coverage  0.000164458  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_34117  CDS  NC_009068  592605  594725  2121  predicted protein  XP_001387344  decreased coverage  0.00012281  normal  0.103056  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_34689  CDS  NC_009068  3228746  3230689  1944  predicted protein  XP_001386942  decreased coverage  0.000996882  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_34770  CDS  NC_009042  75458  78061  2604  Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12)  XP_001382776  decreased coverage  0.00577984  normal  0.0143281  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_34802  CDS  NC_009042  215253  216914  1662  putative permease  XP_001382277  normal  decreased coverage  0.0082411  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_34848  CDS  NC_009042  435200  437215  2016  predicted protein  XP_001382847  decreased coverage  0.00044083  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_35594  CDS  NC_009043  1190610  1191866  1257  predicted protein  XP_001383855  decreased coverage  6.67051e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_36549  CDS  NC_009046  247421  250528  3108  Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins  XP_001385385  normal  0.346459  decreased coverage  0.00970244  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_36928  CDS  NC_009047  249453  250028  576  predicted protein  XP_001386069  decreased coverage  0.000829707  normal  0.878601  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_39517  CDS  NC_009068  2586586  2587836  1251  xylose transporter, high affinity, putative similarity to STL13  XP_001387067  decreased coverage  1.89877e-06  normal  0.584414  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_40727  CDS  NC_009042  2267508  2272436  4929  nucleoporin  XP_001383190  normal  decreased coverage  0.0074687  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_41967  CDS  NC_009042  2146974  2147708  735  predicted protein  XP_001382637  decreased coverage  0.00407294  normal  0.0529872  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_42423  CDS  NC_009042  633953  636295  2343  predicted protein  XP_001382884  normal  decreased coverage  0.00348392  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_42612  CDS  NC_009042  456561  459458  2898  Gdp-GTP Exchange Protein (GEP) for the Rho1p Small GTP-binding Protein  XP_001382323  normal  0.019797  decreased coverage  0.00259781  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_43531  CDS  NC_009043  563571  565169  1599  predicted protein  XP_001383386  decreased coverage  0.00982541  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_44719  CDS  NC_009044  1534621  1537806  3186  predicted protein  XP_001384250  decreased coverage  0.00567496  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_45334  CDS  NC_009044  635810  637066  1257  zinc- and cadmium resistance protein  XP_001384415  decreased coverage  0.00316913  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_45484  CDS  NC_009044  942754  944124  1371  predicted protein  XP_001384484  decreased coverage  0.00903178  normal  0.0734947  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_45688  CDS  NC_009044  1023936  1025048  1113  predicted protein  XP_001384153  decreased coverage  0.00286555  normal  0.102128  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_45709  CDS  NC_009044  563439  564857  1419  predicted protein  XP_001384070  decreased coverage  0.000165254  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_46211  CDS  NC_009045  1362608  1363162  555  predicted protein  XP_001384949  normal  0.223556  decreased coverage  0.000159412  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_46861  CDS  NC_009045  1365934  1366743  810  predicted protein  XP_001385269  normal  0.0747954  decreased coverage  0.000232161  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_46913  CDS  NC_009045  735766  736710  945  methyltransferase family protein  XP_001385152  decreased coverage  0.00628221  hitchhiker  0.00811886  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_46944  CDS  NC_009045  213595  215937  2343  DNA topoisomerase I  XP_001385059  decreased coverage  0.000227493  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_47451  CDS  NC_009045  62186  63931  1746  multidrug resistance protein 4  XP_001385037  decreased coverage  1.99475e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_48821  CDS  NC_009046  930683  931483  801  predicted protein  XP_001385871  decreased coverage  0.00127282  normal  0.146555  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_48947  CDS  NC_009046  836660  838918  2259  predicted protein  XP_001385524  normal  decreased coverage  0.00599657  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_49015  CDS  NC_009046  336822  337100  279  predicted protein  XP_001385409  normal  0.205612  decreased coverage  0.0032819  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_50793  CDS  NC_009048  492472  493179  708  pyridoxine (pyridoxiamine) phosphate oxidase  XP_001386486  decreased coverage  0.00280283  normal  0.442314  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_50972  CDS  NC_009048  535077  535763  687  hypothetical protein  XP_001386496  decreased coverage  0.00363788  normal  0.432488  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_51711  CDS  NC_009068  2149095  2151344  2250  predicted protein  XP_001387654  decreased coverage  0.00408227  normal  0.0250071  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_51919  CDS  NC_009068  768223  769905  1683  tRNA(m5U54)methyltransferase  XP_001387373  decreased coverage  0.00837808  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_52187  CDS  NC_009068  906636  907823  1188  Pex24p Integral peroxisomal membrane peroxin  XP_001387404  decreased coverage  0.000878159  normal  0.869225  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_53602  CDS  NC_009068  3149436  3150186  751  DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5)  XP_001386931  decreased coverage  3.57344e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_53707  CDS  NC_009068  3150492  3151289  798  predicted protein  XP_001387170  decreased coverage  5.16789e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_54201  CDS  NC_009042  504742  506343  1602  alpha 1,2 mannosyltransferase  XP_001382332  decreased coverage  0.000103091  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_55476  CDS  NC_009042  84568  86082  1515  predicted protein  XP_001382777  normal  decreased coverage  0.000353399  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_56077  CDS  NC_009042  417764  419584  1821  transmembrane protein  XP_001382315  decreased coverage  0.00164945  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_56204  CDS  NC_009042  2246267  2246734  468  mitochondrial protein required for iron metabolism  XP_001382658  decreased coverage  0.00663921  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_56448  CDS  NC_009042  2148043  2148690  648  Second and third steps of methylation pathway for phosphatidylcholine biosynthesis  XP_001383176  decreased coverage  0.000744789  normal  0.048662  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_56697  CDS  NC_009043  1610751  1612061  1311  predicted protein  XP_001383930  decreased coverage  3.78422e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_57510  CDS  NC_009043  841874  842227  354  predicted protein  XP_001383442  decreased coverage  0.00398075  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_57623  CDS  NC_009043  1664750  1665925  1176  predicted protein  XP_001383605  normal  0.229552  decreased coverage  0.00611536  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_58842  CDS  NC_009044  1596969  1598033  1065  predicted protein  XP_001384610  normal  0.040839  decreased coverage  0.00802664  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_59451  CDS  NC_009044  1315686  1319201  3516  Chromosome segregation and condensation  XP_001384551  normal  0.819288  decreased coverage  2.61165e-06  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_60429  CDS  NC_009045  817746  818315  570  predicted protein  XP_001384822  decreased coverage  0.0007968  normal  0.2488  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_60431  CDS  NC_009045  1654972  1655718  747  predicted protein  XP_001385320  normal  0.438551  decreased coverage  0.00225495  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_60920  CDS  NC_009045  282831  284540  1710  A(acid, azole) Q(quinidine) Resistance multidrug resistance transporter  XP_001385073  decreased coverage  0.00174903  normal  0.758845  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_61325  CDS  NC_009046  839135  840175  1041  3-keto-steroid reductase  XP_001385525  normal  0.406154  decreased coverage  0.00397596  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_61419  CDS  NC_009046  1004090  1005073  984  predicted protein  XP_001385548  decreased coverage  0.00456855  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_61692  CDS  NC_009046  337312  338136  825  predicted protein  XP_001385752  normal  0.320803  decreased coverage  0.00450301  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_61948  CDS  NC_009046  829742  836245  6504  predicted protein  XP_001385523  normal  0.982611  decreased coverage  0.00785826  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_622  CDS  NC_009042  2355255  2358281  3027  CAT8 controls the key enzymes of gluconeogenesis  XP_001383208  decreased coverage  0.00677411  normal  0.437282  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_63252  CDS  NC_009047  102572  103015  444  predicted protein  XP_001386034  decreased coverage  1.85749e-07  normal  0.478938  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_63669  CDS  NC_009047  465217  466631  1415  predicted protein  XP_001386107  normal  decreased coverage  0.000327085  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_65430  CDS  NC_009043  871792  874040  2249  Protein phosphatase PP2A regulatory subunit B (PR55) (Cell division control protein 55)  XP_001383449  decreased coverage  0.0029528  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_65985  CDS  NC_009046  1370936  1372993  2058  predicted protein  XP_001385615  decreased coverage  0.00221694  normal  0.861424  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_66402  CDS  NC_009068  1227678  1230200  2523  Myosin class V heavy chain  XP_001387881  normal  decreased coverage  0.00220738  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_66830  CDS  NC_009042  506405  507937  1533  26S proteasome regulatory subunit  XP_001382856  decreased coverage  4.27133e-05  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_67099  CDS  NC_009042  2343877  2345126  1250  hypothetical protein  XP_001383204  decreased coverage  6.34567e-05  normal  0.0803186  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_67553  CDS  NC_009044  730725  733952  3228  hypothetical protein  XP_001384437  decreased coverage  0.00659474  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_68450  CDS  NC_009048  259464  260843  1380  repeated sequence with similarity to MUC1  XP_001386448  decreased coverage  1.6025e-06  decreased coverage  9.96507e-06  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_72153  CDS  NC_009044  608447  609712  1266  NADPH-dependent methylglyoxal reductase GRE2  XP_001384081  normal  decreased coverage  0.00635585  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
PICST_75104  CDS  NC_009068  746197  747233  1037  hypothetical protein  XP_001387781  decreased coverage  0.00935914  normal  Scheffersomyces stipitis CBS 6054  Eukaryota 
 
 
-
 
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