46 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Plut_0011  CDS  NC_007512  15317  15943  627  ribonuclease HII  YP_373946  decreased coverage  1.50276e-09  normal  0.177364  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0012  CDS  NC_007512  16195  17907  1713  ribonuclease E and G  YP_373947  decreased coverage  3.76513e-06  normal  0.207191  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0079  CDS  NC_007512  85228  86052  825  orotidine 5'-phosphate decarboxylase subfamily protein  YP_374012  decreased coverage  0.000192992  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0101  CDS  NC_007512  106313  107329  1017  putative AefA  YP_374034  decreased coverage  1.59695e-08  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0106  CDS  NC_007512  122738  123085  348  pterin-4-alpha-carbinolamine dehydratase  YP_374039  decreased coverage  9.70517e-05  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0187  CDS  NC_007512  191208  191966  759  30S ribosomal protein S3  YP_374118  decreased coverage  1.14695e-05  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0203  CDS  NC_007512  199652  199870  219  translation initiation factor IF-1  YP_374134  decreased coverage  3.10182e-09  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0353  CDS  NC_007512  363615  364844  1230  hypothetical protein  YP_374284  decreased coverage  7.83451e-07  normal  0.36441  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0424  CDS  NC_007512  500561  500995  435  TraR/DksA family transcriptional regulator  YP_374355  decreased coverage  0.00014325  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0530  CDS  NC_007512  621866  622468  603  hypothetical protein  YP_374457  decreased coverage  1.51796e-09  normal  0.189594  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0581  CDS  NC_007512  680798  681472  675  peroxiredoxin  YP_374507  decreased coverage  0.00103295  normal  0.228925  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_0857  CDS  NC_007512  975620  977551  1932  serine phosphatase  YP_374765  decreased coverage  0.00025918  normal  0.662665  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_0858  CDS  NC_007512  977631  978413  783  amino acid ABC transporter periplasmic protein  YP_374766  decreased coverage  0.00112891  normal  0.531566  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_0965  CDS  NC_007512  1090629  1091978  1350  Signal recognition particle protein  YP_374870  decreased coverage  8.05339e-07  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1026  CDS  NC_007512  1165893  1167059  1167  hypothetical protein  YP_374931  normal  0.309757  decreased coverage  0.00589237  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1027  CDS  NC_007512  1167389  1170688  3300  hypothetical protein  YP_374932  normal  decreased coverage  0.0040274  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1094  CDS  NC_007512  1247764  1248069  306  hypothetical protein  YP_374999  decreased coverage  2.85141e-09  normal  0.517034  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1095  CDS  NC_007512  1248194  1248697  504  hypothetical protein  YP_375000  decreased coverage  8.42903e-10  normal  0.525749  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1117  CDS  NC_007512  1271560  1272099  540  hypothetical protein  YP_375022  decreased coverage  6.88301e-10  normal  0.70416  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1163  CDS  NC_007512  1319655  1320980  1326  ammonium transporter  YP_375068  decreased coverage  4.33758e-06  normal  0.156813  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_1164  CDS  NC_007512  1321002  1321343  342  nitrogen regulatory protein P-II (GlnB, GlnK)  YP_375069  decreased coverage  1.55222e-06  normal  0.138498  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_1165  CDS  NC_007512  1321444  1322118  675  hypothetical protein  YP_375070  decreased coverage  1.53075e-06  normal  0.142353  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1349  CDS  NC_007512  1525117  1525299  183  50S ribosomal protein L33  YP_375251  decreased coverage  3.21816e-10  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1373  CDS  NC_007512  1552573  1554009  1437  hypothetical protein  YP_375275  decreased coverage  0.00411865  normal  0.344079  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1578  CDS  NC_007512  1767927  1769060  1134  Gfo/Idh/MocA family oxidoreductase  YP_375475  normal  decreased coverage  0.00538789  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1579  CDS  NC_007512  1769120  1770544  1425  coproporphyrinogen III oxidase  YP_375476  normal  decreased coverage  0.00577188  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1580  CDS  NC_007512  1770691  1771218  528  1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase  YP_375477  normal  0.648191  decreased coverage  0.00489164  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1635  CDS  NC_007512  1832329  1834527  2199  polynucleotide phosphorylase/polyadenylase  YP_375532  decreased coverage  0.000929838  normal  0.469097  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1728  CDS  NC_007512  1935151  1936467  1317  MiaB-like tRNA modifying enzyme  YP_375625  normal  0.479022  decreased coverage  0.00502843  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1729  CDS  NC_007512  1936735  1937181  447  hypothetical protein  YP_375626  normal  0.250754  decreased coverage  0.0035862  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1730  CDS  NC_007512  1937233  1938456  1224  rod shape-determining protein RodA  YP_375627  normal  0.0257403  decreased coverage  0.00417518  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1731  CDS  NC_007512  1938554  1939471  918  GTP-binding protein Era  YP_375628  hitchhiker  0.000233953  decreased coverage  0.0035862  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1732  CDS  NC_007512  1939607  1941376  1770  30S ribosomal protein S1  YP_375629  decreased coverage  0.000125222  decreased coverage  0.00441133  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1781  CDS  NC_007512  1990279  1990854  576  hypothetical protein  YP_375678  decreased coverage  0.000171519  normal  0.0471019  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1788  CDS  NC_007512  1997638  1998453  816  phosphatidate cytidylyltransferase  YP_375685  normal  decreased coverage  0.00193933  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1789  CDS  NC_007512  1998465  1999376  912  hypothetical protein  YP_375686  normal  decreased coverage  0.00196901  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1790  CDS  NC_007512  1999670  2000020  351  hypothetical protein  YP_375687  normal  decreased coverage  0.00158437  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1791  CDS  NC_007512  2000180  2001262  1083  heptosyltransferase  YP_375688  normal  decreased coverage  0.00189607  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1819  CDS  NC_007512  2030256  2030552  297  transposase-like  YP_375716  decreased coverage  1.87587e-10  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1827  CDS  NC_007512  2041402  2041995  594  hypothetical protein  YP_375723  decreased coverage  0.00303653  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1832  CDS  NC_007512  2045918  2046571  654  hypothetical protein  YP_375728  decreased coverage  0.000688903  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1893  CDS  NC_007512  2105259  2106782  1524  hypothetical protein  YP_375784  decreased coverage  0.00616409  normal  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1894  CDS  NC_007512  2106840  2108138  1299  YgfB and YecA  YP_375785  decreased coverage  0.00737905  normal  0.979127  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1954  CDS  NC_007512  2171995  2173878  1884  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit  YP_375839  decreased coverage  5.78681e-05  normal  0.212626  Chlorobium luteolum DSM 273  Bacteria 
 
 
-
 
Plut_1958  CDS  NC_007512  2176616  2177254  639  elongation factor P  YP_375843  decreased coverage  1.39514e-06  normal  0.25468  Chlorobium luteolum DSM 273  Bacteria 
 
 
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Plut_2035  CDS  NC_007512  2265697  2266887  1191  hypothetical protein  YP_375920  decreased coverage  6.07972e-08  normal  0.528651  Chlorobium luteolum DSM 273  Bacteria 
 
 
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