131 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sputcn32_0013  CDS  NC_009438  17094  19244  2151  multifunctional fatty acid oxidation complex subunit alpha  YP_001181548  decreased coverage  0.000142726  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0034  CDS  NC_009438  37621  38169  549  carbonic anhydrase  YP_001181569  decreased coverage  6.02369e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0344  CDS  NC_009438  371385  372290  906  DNA binding domain-containing protein  YP_001181875  decreased coverage  4.33328e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0368  CDS  NC_009438  401444  401935  492  protein of unknown function, Spy-related  YP_001181899  decreased coverage  5.28053e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0462  CDS  NC_009438  496223  496900  678  DNA repair protein RadC  YP_001181993  decreased coverage  1.08191e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0463  CDS  NC_009438  497022  497258  237  50S ribosomal protein L28  YP_001181994  decreased coverage  8.43852e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0545  CDS  NC_009438  592755  593225  471  hypothetical protein  YP_001182076  decreased coverage  2.54909e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0603  CDS  NC_009438  663442  665592  2151  TonB-dependent siderophore receptor  YP_001182134  decreased coverage  0.00298801  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0623  CDS  NC_009438  687731  688357  627  cytochrome c family protein  YP_001182153  decreased coverage  0.000405798  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0649  CDS  NC_009438  721289  722617  1329  integral membrane sensor signal transduction histidine kinase  YP_001182178  decreased coverage  1.50109e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0650  CDS  NC_009438  722614  723288  675  two component transcriptional regulator  YP_001182179  decreased coverage  4.93918e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0700  CDS  NC_009438  789168  789458  291  co-chaperonin GroES  YP_001182229  decreased coverage  0.000383643  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0713  CDS  NC_009438  803752  804195  444  PTS IIA-like nitrogen-regulatory protein PtsN  YP_001182242  decreased coverage  3.49351e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0744  CDS  NC_009438  832235  832663  429  50S ribosomal protein L13  YP_001182273  decreased coverage  5.18641e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0745  CDS  NC_009438  832678  833070  393  30S ribosomal protein S9  YP_001182274  decreased coverage  5.1972e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0757  CDS  NC_009438  843162  845360  2199  hypothetical protein  YP_001182286  decreased coverage  6.01769e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0767  CDS  NC_009438  853423  854118  696  hypothetical protein  YP_001182296  decreased coverage  8.36076e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0768  CDS  NC_009438  854186  855493  1308  outer membrane channel protein  YP_001182297  decreased coverage  3.09945e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0842  CDS  NC_009438  935404  936249  846  MltA-interacting MipA family protein  YP_001182370  decreased coverage  0.00913257  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0843  CDS  NC_009438  936259  936648  390  hypothetical protein  YP_001182371  decreased coverage  0.00211691  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0956  CDS  NC_009438  1067851  1068027  177  hypothetical protein  YP_001182484  decreased coverage  1.64375e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0978  CDS  NC_009438  1090480  1091475  996  trans-hexaprenyltranstransferase  YP_001182506  decreased coverage  2.34439e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_0991  CDS  NC_009438  1101487  1102791  1305  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_001182519  decreased coverage  1.34867e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1021  CDS  NC_009438  1134461  1135222  762  putative lipoprotein  YP_001182549  decreased coverage  1.5232e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1026  CDS  NC_009438  1140493  1141344  852  CDP-diacylglycerol--serine O-phosphatidyltransferase  YP_001182554  decreased coverage  3.27508e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1048  CDS  NC_009438  1170319  1171956  1638  glucose-6-phosphate isomerase  YP_001182575  decreased coverage  0.000131328  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1081  CDS  NC_009438  1212789  1213511  723  hypothetical protein  YP_001182608  decreased coverage  2.0952e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1082  CDS  NC_009438  1213695  1214060  366  protein of unknown function DUF861, cupin_3  YP_001182609  decreased coverage  5.97126e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1083  CDS  NC_009438  1214091  1215581  1491  methylmalonate-semialdehyde dehydrogenase  YP_001182610  decreased coverage  1.48294e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1106  CDS  NC_009438  1246718  1247161  444  GatB/Yqey domain-containing protein  YP_001182633  decreased coverage  3.29477e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1107  CDS  NC_009438  1247168  1247383  216  30S ribosomal protein S21  YP_001182634  decreased coverage  1.30678e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1127  CDS  NC_009438  1266724  1268130  1407  peptidase M23B  YP_001182654  decreased coverage  0.000608337  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1153  CDS  NC_009438  1296103  1296681  579  RNA polymerase sigma factor RpoE  YP_001182680  decreased coverage  6.09864e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1170  CDS  NC_009438  1311125  1311871  747  tRNA (guanine-N(1)-)-methyltransferase  YP_001182697  decreased coverage  1.07568e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1171  CDS  NC_009438  1311906  1312259  354  50S ribosomal protein L19  YP_001182698  decreased coverage  2.51517e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1274  CDS  NC_009438  1434555  1435175  621  heat shock protein GrpE  YP_001182801  decreased coverage  1.25429e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1287  CDS  NC_009438  1447086  1449911  2826  peptidase S9 prolyl oligopeptidase  YP_001182814  decreased coverage  0.000172415  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1347  CDS  NC_009438  1528221  1529057  837  methionine aminopeptidase  YP_001182874  decreased coverage  2.00998e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1348  CDS  NC_009438  1529330  1530058  729  30S ribosomal protein S2  YP_001182875  decreased coverage  1.64287e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1349  CDS  NC_009438  1530179  1531030  852  elongation factor Ts  YP_001182876  decreased coverage  2.81434e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1358  CDS  NC_009438  1539889  1540914  1026  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001182885  decreased coverage  5.61491e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1393  CDS  NC_009438  1581048  1581791  744  short-chain dehydrogenase/reductase SDR  YP_001182919  decreased coverage  0.0083444  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1478  CDS  NC_009438  1682048  1684039  1992  decaheme cytochrome c  YP_001183002  decreased coverage  2.54716e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1532  CDS  NC_009438  1747972  1751028  3057  SMC domain-containing protein  YP_001183056  decreased coverage  0.000252521  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1533  CDS  NC_009438  1751294  1752589  1296  peptidase M23B  YP_001183057  decreased coverage  0.00239746  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1641  CDS  NC_009438  1871728  1872276  549  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_001183165  decreased coverage  3.31671e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1660  CDS  NC_009438  1891411  1893600  2190  TonB-dependent receptor  YP_001183184  decreased coverage  7.50921e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1703  CDS  NC_009438  1941317  1942414  1098  NlpB/DapX family lipoprotein  YP_001183227  decreased coverage  3.63681e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1762  CDS  NC_009438  2008916  2010019  1104  ribonuclease D  YP_001183286  decreased coverage  6.18336e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1774  CDS  NC_009438  2020202  2020807  606  intracellular proteinase inhibitor domain-containing protein  YP_001183298  decreased coverage  6.54513e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1791  CDS  NC_009438  2034992  2037439  2448  acyl-CoA dehydrogenase  YP_001183315  decreased coverage  0.000904865  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1808  CDS  NC_009438  2054642  2056705  2064  peptidase S9 prolyl oligopeptidase  YP_001183331  decreased coverage  1.3403e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1828  CDS  NC_009438  2089072  2090055  984  phenylalanyl-tRNA synthetase subunit alpha  YP_001183350  decreased coverage  5.69857e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1841  CDS  NC_009438  2104218  2106308  2091  TonB-dependent siderophore receptor  YP_001183363  decreased coverage  2.40616e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1842  CDS  NC_009438  2106437  2107606  1170  peptidase  YP_001183364  decreased coverage  9.983e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1890  CDS  NC_009438  2161499  2162344  846  hypothetical protein  YP_001183412  decreased coverage  0.00358121  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1938  CDS  NC_009438  2222374  2222991  618  Holliday junction DNA helicase RuvA  YP_001183460  decreased coverage  0.00077844  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_1939  CDS  NC_009438  2223005  2224009  1005  Holliday junction DNA helicase RuvB  YP_001183461  decreased coverage  0.00566974  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2018  CDS  NC_009438  2301188  2303116  1929  threonyl-tRNA synthetase  YP_001183538  decreased coverage  0.000164437  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2078  CDS  NC_009438  2377865  2379712  1848  signal peptide peptidase SppA, 67K type  YP_001183598  decreased coverage  2.18784e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2085  CDS  NC_009438  2388531  2389850  1320  hypothetical protein  YP_001183605  decreased coverage  0.00496552  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2099  CDS  NC_009438  2407677  2408126  450  MarR family transcriptional regulator  YP_001183619  decreased coverage  0.00262035  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2224  CDS  NC_009438  2561518  2562228  711  leucyl/phenylalanyl-tRNA--protein transferase  YP_001183744  decreased coverage  1.87963e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2233  CDS  NC_009438  2570820  2571938  1119  tRNA-specific 2-thiouridylase MnmA  YP_001183753  decreased coverage  1.03547e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2234  CDS  NC_009438  2571942  2572559  618  hypothetical protein  YP_001183754  decreased coverage  0.000101466  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2243  CDS  NC_009438  2582162  2584531  2370  phosphoenolpyruvate synthase  YP_001183763  decreased coverage  0.0079831  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2274  CDS  NC_009438  2618727  2620013  1287  type II citrate synthase  YP_001183794  decreased coverage  3.58341e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2299  CDS  NC_009438  2648736  2650649  1914  heat shock protein 90  YP_001183819  decreased coverage  3.23275e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2300  CDS  NC_009438  2650935  2651534  600  recombination protein RecR  YP_001183820  decreased coverage  5.70864e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2301  CDS  NC_009438  2651547  2651876  330  hypothetical protein  YP_001183821  decreased coverage  1.77847e-09  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2316  CDS  NC_009438  2666670  2667989  1320  lytic murein transglycosylase  YP_001183836  decreased coverage  2.38033e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2317  CDS  NC_009438  2668196  2668555  360  hypothetical protein  YP_001183837  decreased coverage  3.94227e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2318  CDS  NC_009438  2668607  2669245  639  hypothetical protein  YP_001183838  decreased coverage  1.53526e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2366  CDS  NC_009438  2732673  2736110  3438  chromosome segregation protein SMC  YP_001183886  decreased coverage  0.00122996  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2470  CDS  NC_009438  2867080  2868417  1338  aromatic hydrocarbon degradation membrane protein  YP_001183990  decreased coverage  1.67182e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2475  CDS  NC_009438  2874220  2874432  213  hypothetical protein  YP_001183995  decreased coverage  2.50816e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2476  CDS  NC_009438  2874506  2874844  339  rhodanese domain-containing protein  YP_001183996  decreased coverage  4.91835e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2477  CDS  NC_009438  2875373  2877844  2472  peptidase S8/S53 subtilisin kexin sedolisin  YP_001183997  decreased coverage  4.47493e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2482  CDS  NC_009438  2881108  2882958  1851  preprotein translocase subunit SecD  YP_001184002  decreased coverage  1.87651e-05  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2483  CDS  NC_009438  2882976  2883308  333  preprotein translocase subunit YajC  YP_001184003  decreased coverage  3.29003e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2484  CDS  NC_009438  2883336  2884460  1125  queuine tRNA-ribosyltransferase  YP_001184004  decreased coverage  5.74895e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2509  CDS  NC_009438  2919947  2921515  1569  Na+/H+ antiporter NhaC  YP_001184029  decreased coverage  3.17114e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2633  CDS  NC_009438  3053454  3054398  945  hypothetical protein  YP_001184153  decreased coverage  0.00133263  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2670  CDS  NC_009438  3099204  3100652  1449  extracellular solute-binding protein  YP_001184188  decreased coverage  0.00030492  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2673  CDS  NC_009438  3103713  3104726  1014  threonine aldolase  YP_001184191  decreased coverage  3.71505e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2705  CDS  NC_009438  3131494  3131838  345  hypothetical protein  YP_001184223  decreased coverage  0.00514172  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2737  CDS  NC_009438  3168550  3168825  276  Trp operon repressor  YP_001184255  decreased coverage  3.12745e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2738  CDS  NC_009438  3169014  3169463  450  cytochrome c, class II  YP_001184256  decreased coverage  2.39572e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2786  CDS  NC_009438  3233043  3234161  1119  RND family efflux transporter MFP subunit  YP_001184304  decreased coverage  0.000125206  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2842  CDS  NC_009438  3303365  3303994  630  23S rRNA methyltransferase J  YP_001184360  decreased coverage  1.46393e-08  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2928  CDS  NC_009438  3395175  3396104  930  hypothetical protein  YP_001184442  decreased coverage  0.00706398  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2929  CDS  NC_009438  3396311  3397207  897  3'-5' exonuclease  YP_001184443  decreased coverage  0.00209751  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_2942  CDS  NC_009438  3413539  3414156  618  peptidylprolyl isomerase, FKBP-type  YP_001184456  decreased coverage  3.0729e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3065  CDS  NC_009438  3556398  3557924  1527  NAD(P) transhydrogenase subunit alpha  YP_001184577  decreased coverage  3.58371e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3066  CDS  NC_009438  3557936  3559420  1485  pyridine nucleotide transhydrogenase  YP_001184578  decreased coverage  0.00270245  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3086  CDS  NC_009438  3585814  3588678  2865  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_001184598  decreased coverage  0.00135337  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3087  CDS  NC_009438  3588904  3589887  984  hypothetical protein  YP_001184599  decreased coverage  5.62391e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3096  CDS  NC_009438  3597769  3598449  681  hypothetical protein  YP_001184608  decreased coverage  1.06475e-07  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3097  CDS  NC_009438  3598475  3599764  1290  phosphate transporter  YP_001184609  decreased coverage  2.38247e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
Sputcn32_3154  CDS  NC_009438  3667622  3669715  2094  elongation factor G  YP_001184665  decreased coverage  5.1485e-06  n/a    Shewanella putrefaciens CN-32  Bacteria 
 
 
-
 
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