22 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sala_0662  CDS  NC_008048  673643  674458  816  hypothetical protein  YP_615716  decreased coverage  0.00465467  normal  0.1826  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_0691  CDS  NC_008048  697770  698096  327  hypothetical protein  YP_615745  decreased coverage  0.00836251  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_0816  CDS  NC_008048  820239  821849  1611  major facilitator transporter  YP_615868  normal  0.973467  decreased coverage  0.000368786  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_0817  CDS  NC_008048  821854  822534  681  superoxide dismutase, copper/zinc binding  YP_615869  normal  0.509975  decreased coverage  0.0003056  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_0886  CDS  NC_008048  891742  894162  2421  TonB-dependent receptor  YP_615937  decreased coverage  0.0016588  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_0896  CDS  NC_008048  904966  905622  657  TetR family transcriptional regulator  YP_615947  decreased coverage  0.00832617  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1068  CDS  NC_008048  1100283  1101599  1317  adenylosuccinate lyase  YP_616118  decreased coverage  0.0025797  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1161  CDS  NC_008048  1194499  1195344  846  taurine catabolism dioxygenase TauD/TfdA  YP_616210  decreased coverage  0.00427132  normal  0.195503  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1301  CDS  NC_008048  1360975  1361463  489  NADH dehydrogenase subunit I  YP_616348  decreased coverage  0.00320411  normal  0.488956  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1331  CDS  NC_008048  1393679  1394989  1311  3-methyl-2-oxobutanoate dehydrogenase (lipoamide)  YP_616378  decreased coverage  0.00114288  normal  0.0467379  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1392  CDS  NC_008048  1447370  1448242  873  phenylalanine 4-monooxygenase  YP_616439  decreased coverage  0.00177331  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1463  CDS  NC_008048  1518329  1520797  2469  TonB-dependent receptor, plug  YP_616509  decreased coverage  2.24426e-05  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1560  CDS  NC_008048  1624715  1625287  573  membrane protein-like protein  YP_616606  decreased coverage  0.00722707  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1752  CDS  NC_008048  1845105  1846292  1188  ribonuclease D  YP_616798  decreased coverage  0.00607213  normal  0.281233  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1816  CDS  NC_008048  1914292  1914573  282  hypothetical protein  YP_616861  decreased coverage  0.0040301  normal  0.186382  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_1831  CDS  NC_008048  1925390  1926598  1209  HI0933-like protein  YP_616876  decreased coverage  0.000611752  normal  0.363311  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_2017  CDS  NC_008048  2127244  2128566  1323  MltA  YP_617061  normal  decreased coverage  0.00129045  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_2215  CDS  NC_008048  2326796  2327710  915  band 7 protein  YP_617257  decreased coverage  0.00993156  normal  0.0579  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_2216  CDS  NC_008048  2327712  2328158  447  hypothetical protein  YP_617258  decreased coverage  0.00884783  normal  0.106638  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_2505  CDS  NC_008048  2640552  2642795  2244  TonB-dependent receptor  YP_617545  decreased coverage  0.00363103  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_2959  CDS  NC_008048  3101837  3102766  930  hypothetical protein  YP_617997  decreased coverage  0.00883082  normal  0.0672974  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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Sala_R0039  tRNA  NC_008048  2379346  2379419  74  tRNA-Cys    decreased coverage  0.00215479  normal  Sphingopyxis alaskensis RB2256  Bacteria 
 
 
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