71 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tcr_0077  CDS  NC_007520  96811  99636  2826  methyl-accepting chemotaxis sensory transducer  YP_390348  decreased coverage  0.000232315  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0093  CDS  NC_007520  119967  120701  735  Beta-lactamase-like  YP_390363  decreased coverage  2.94531e-09  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0120  CDS  NC_007520  152983  154035  1053  A/G-specific adenine glycosylase  YP_390390  decreased coverage  5.58564e-05  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0126  CDS  NC_007520  158553  159812  1260  transcription termination factor Rho  YP_390396  decreased coverage  2.06271e-11  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0157  CDS  NC_007520  189475  190470  996  hypothetical protein  YP_390427  decreased coverage  9.7536e-13  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0239  CDS  NC_007520  283627  284598  972  NAD-dependent epimerase/dehydratase  YP_390509  decreased coverage  1.44523e-06  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0240  CDS  NC_007520  284692  285942  1251  metal dependent phosphohydrolase  YP_390510  decreased coverage  8.20845e-06  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0244  CDS  NC_007520  291921  293909  1989  transketolase  YP_390514  decreased coverage  1.79813e-08  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0247  CDS  NC_007520  296525  297967  1443  pyruvate kinase  YP_390517  decreased coverage  1.62471e-07  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0248  CDS  NC_007520  298068  299132  1065  fructose-1,6-bisphosphate aldolase  YP_390518  decreased coverage  7.4313e-09  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0325  CDS  NC_007520  365195  365908  714  hypothetical protein  YP_390595  decreased coverage  0.000791137  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0326  CDS  NC_007520  366044  367432  1389  major facilitator transporter  YP_390596  decreased coverage  8.04058e-05  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0418  CDS  NC_007520  468121  468903  783  hypothetical protein  YP_390688  decreased coverage  8.26848e-13  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0437  CDS  NC_007520  490289  490564  276  hypothetical protein  YP_390707  decreased coverage  0.00329875  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0471  CDS  NC_007520  527715  528782  1068  ATP-binding region, ATPase-like  YP_390741  decreased coverage  2.1987e-08  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0486  CDS  NC_007520  543035  543472  438  hypothetical protein  YP_390756  decreased coverage  1.78654e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0498  CDS  NC_007520  555463  556692  1230  lytic murein transglycosylase  YP_390768  decreased coverage  9.29833e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0515  CDS  NC_007520  579521  579985  465  GreA/GreB family elongation factor  YP_390785  decreased coverage  4.2647e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0560  CDS  NC_007520  630174  631364  1191  cell division protein FtsZ  YP_390830  decreased coverage  1.2227e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0579  CDS  NC_007520  652925  654415  1491  cysteine desulfurase activator complex subunit SufB  YP_390849  decreased coverage  0.00207059  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0598  CDS  NC_007520  674626  675987  1362  N-acetylglutamate synthase  YP_390868  decreased coverage  0.00244264  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0628  CDS  NC_007520  704993  705301  309  cytochrome c, class I  YP_390898  decreased coverage  3.35471e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0629  CDS  NC_007520  705448  705756  309  cytochrome c, class I  YP_390899  decreased coverage  2.91429e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0649  CDS  NC_007520  726410  727123  714  tRNA (guanine-N1)-methyltransferase  YP_390919  decreased coverage  0.00700653  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0660  CDS  NC_007520  738548  738883  336  hypothetical protein  YP_390930  decreased coverage  3.50664e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0711  CDS  NC_007520  780140  781063  924  malonyl CoA-acyl carrier protein transacylase  YP_390981  decreased coverage  4.05607e-13  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0713  CDS  NC_007520  781985  782221  237  acyl carrier protein  YP_390983  decreased coverage  3.1745e-15  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0726  CDS  NC_007520  797526  799040  1515  lysyl-tRNA synthetase  YP_390996  decreased coverage  4.47446e-11  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0729  CDS  NC_007520  800995  802596  1602  L-aspartate oxidase  YP_390999  decreased coverage  3.84944e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0730  CDS  NC_007520  802678  803181  504  positive regulator of sigma(E), RseC/MucC  YP_391000  decreased coverage  9.50135e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0814  CDS  NC_007520  886770  888104  1335  phosphoglucosamine mutase  YP_391084  decreased coverage  5.66204e-07  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0815  CDS  NC_007520  888176  888937  762  triosephosphate isomerase  YP_391085  decreased coverage  2.44559e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0890  CDS  NC_007520  969312  971102  1791  aspartyl-tRNA synthetase  YP_391160  decreased coverage  7.08268e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0943  CDS  NC_007520  1016706  1018718  2013  copper-translocating P-type ATPase  YP_391212  decreased coverage  2.94219e-08  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0954  CDS  NC_007520  1031227  1032444  1218  Rh-like protein/ammonium transporter  YP_391223  decreased coverage  3.69516e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_0971  CDS  NC_007520  1051400  1052761  1362  magnesium transporter  YP_391240  decreased coverage  0.000190733  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1021  CDS  NC_007520  1098984  1099886  903  diguanylate cyclase  YP_391290  decreased coverage  5.48579e-13  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1031  CDS  NC_007520  1106708  1107439  732  electron transport complex RsxE subunit  YP_391300  decreased coverage  5.59383e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1043  CDS  NC_007520  1120985  1121608  624  deoxycytidine triphosphate deaminase  YP_391312  decreased coverage  0.000608448  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1063  CDS  NC_007520  1137439  1139361  1923  hypothetical protein  YP_391332  decreased coverage  9.14446e-07  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1112  CDS  NC_007520  1195502  1197748  2247  AAA ATPase  YP_391381  decreased coverage  3.19586e-05  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1113  CDS  NC_007520  1197834  1198052  219  translation initiation factor IF-1  YP_391382  decreased coverage  7.44837e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1165  CDS  NC_007520  1268686  1269498  813  septum site-determining protein MinD  YP_391434  decreased coverage  5.37171e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1252  CDS  NC_007520  1368151  1369341  1191  aminotransferase  YP_391521  decreased coverage  0.000164192  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1283  CDS  NC_007520  1398498  1399208  711  uridylate kinase  YP_391552  decreased coverage  3.89997e-13  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1304  CDS  NC_007520  1421714  1423054  1341  Type I secretion outer membrane protein, TolC  YP_391573  decreased coverage  1.51154e-11  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1315  CDS  NC_007520  1431910  1433028  1119  putative signal peptide protein  YP_391584  decreased coverage  3.48515e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
 
Tcr_1351  CDS  NC_007520  1466589  1467830  1242  FAD dependent oxidoreductase  YP_391620  decreased coverage  1.08585e-05  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1450  CDS  NC_007520  1568090  1568533  444  hypothetical protein  YP_391716  decreased coverage  2.69237e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1486  CDS  NC_007520  1606542  1607105  564  OmpA/MotB  YP_391752  decreased coverage  0.00178508  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1503  CDS  NC_007520  1627978  1630752  2775  valyl-tRNA synthetase  YP_391769  decreased coverage  3.30515e-05  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1531  CDS  NC_007520  1668470  1669690  1221  secretion protein HlyD  YP_391797  decreased coverage  1.26911e-11  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1553  CDS  NC_007520  1701310  1701792  483  Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_391819  decreased coverage  1.30107e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1585  CDS  NC_007520  1734732  1735460  729  hypothetical protein  YP_391851  decreased coverage  2.81784e-08  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1796  CDS  NC_007520  1970615  1971496  882  PfkB  YP_392062  decreased coverage  5.2274e-09  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1809  CDS  NC_007520  1986032  1986247  216  ribosomal protein S21  YP_392075  decreased coverage  1.75133e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1810  CDS  NC_007520  1986429  1987505  1077  glycoprotease family metalloendopeptidase  YP_392076  decreased coverage  7.88208e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1837  CDS  NC_007520  2012439  2013296  858  pyrroline-5-carboxylate reductase  YP_392103  decreased coverage  9.89753e-07  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1864  CDS  NC_007520  2040858  2041994  1137  ferrochelatase  YP_392128  decreased coverage  7.15246e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1880  CDS  NC_007520  2056292  2057395  1104  Beta-lactamase-like  YP_392144  decreased coverage  3.60179e-11  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1881  CDS  NC_007520  2057546  2058649  1104  hypothetical protein  YP_392145  decreased coverage  3.22257e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1908  CDS  NC_007520  2088510  2089832  1323  amino acid permease-associated region  YP_392172  decreased coverage  0.00117224  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_1946  CDS  NC_007520  2133732  2134247  516  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_392210  decreased coverage  1.26826e-09  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_2015  CDS  NC_007520  2220316  2222514  2199  TonB-dependent receptor  YP_392279  decreased coverage  1.04514e-08  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_2047  CDS  NC_007520  2258654  2259538  885  rhodanese-like protein  YP_392311  decreased coverage  0.000810205  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0004  tRNA  NC_007520  330124  330200  77  tRNA-Trp    decreased coverage  3.05052e-15  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0005  tRNA  NC_007520  442921  442995  75  tRNA-Gln    decreased coverage  1.19132e-12  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0014  tRNA  NC_007520  839313  839403  91  tRNA-Ser    decreased coverage  0.00196818  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0030  tRNA  NC_007520  1332325  1332400  76  tRNA-Ala    decreased coverage  4.91237e-14  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0038  rRNA  NC_007520  1635964  1637454  1491  16S ribosomal RNA    decreased coverage  8.64904e-06  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Tcr_R0048  tRNA  NC_007520  2134366  2134441  76  tRNA-Thr    decreased coverage  5.35442e-10  n/a    Thiomicrospira crunogena XCL-2  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>