94 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
VSAL_I0004  CDS  NC_011312  4129  4482  354  ribonuclease P  YP_002261566  decreased coverage  0.00123584  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0005  CDS  NC_011312  4499  4633  135  50S ribosomal protein L34  YP_002261567  decreased coverage  0.000814875  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0009  CDS  NC_011312  7427  8833  1407  chromosomal replication initiation protein  YP_002261571  decreased coverage  0.00184157  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0010  CDS  NC_011312  8866  9975  1110  DNA polymerase III subunit beta  YP_002261572  decreased coverage  0.000914164  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0146  CDS  NC_011312  185316  186620  1305  ATP-dependent RNA helicase RhlB  YP_002261695  decreased coverage  0.00149472  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0147  CDS  NC_011312  186733  187059  327  thioredoxin 1  YP_002261696  decreased coverage  0.000169587  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0148  CDS  NC_011312  187298  188557  1260  transcription termination factor Rho  YP_002261697  decreased coverage  0.00136527  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0221  CDS  NC_011312  261640  264150  2511  adenylate cyclase  YP_002261761  decreased coverage  0.00754404  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0341  CDS  NC_011312  374362  374718  357  30S ribosomal protein S13  YP_002261873  decreased coverage  0.000179312  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0403  CDS  NC_011312  441181  442911  1731  sulfite reductase subunit beta  YP_002261932  decreased coverage  0.00409263  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0469  CDS  NC_011312  525107  526747  1641  type IV pilus, mannose-sensitive hemagglutinin D (MSHD)  YP_002261994  decreased coverage  0.00341212  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0470  CDS  NC_011312  526758  527606  849  type IV pilus, mannose-sensitive hemagglutinin D (MSHM)  YP_002261995  decreased coverage  0.00298128  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0483  CDS  NC_011312  541014  542057  1044  rod shape-determining protein MreB  YP_002262006  decreased coverage  0.00102947  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0570  CDS  NC_011312  626228  628489  2262  fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain  YP_002262090  decreased coverage  0.00603169  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0663  CDS  NC_011312  735514  736281  768  outer membrane protein  YP_002262181  decreased coverage  0.000502796  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0664  CDS  NC_011312  736402  737376  975  23S rRNA pseudouridine synthase D  YP_002262182  decreased coverage  0.0008107  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0760  CDS  NC_011312  849441  850346  906  ribosomal protein S6 modification protein  YP_002262276  decreased coverage  0.00088888  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0820  CDS  NC_011312  910404  911612  1209  transposase  YP_002262327  decreased coverage  0.00771423  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0854  CDS  NC_011312  950894  951664  771  hypothetical protein  YP_002262361  decreased coverage  0.00265216  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I0855  CDS  NC_011312  952023  953303  1281  tyrosyl-tRNA synthetase  YP_002262362  decreased coverage  0.00588538  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1064  CDS  NC_011312  1156366  1157490  1125  ribonuclease D (rnase d)  YP_002262551  decreased coverage  0.00409138  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1065  CDS  NC_011312  1157566  1157826  261  cell division topological specificity factor MinE  YP_002262552  decreased coverage  0.00330436  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1066  CDS  NC_011312  1157829  1158641  813  septum site-determining protein MinD (cell division inhibitor MinD)  YP_002262553  decreased coverage  0.00857839  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1067  CDS  NC_011312  1158665  1159330  666  septum formation inhibitor  YP_002262554  decreased coverage  0.00667924  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1287  CDS  NC_011312  1397327  1397785  459  putative RNA methyltransferase  YP_002262750  decreased coverage  0.000276682  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1288  CDS  NC_011312  1397881  1398354  474  hypothetical protein  YP_002262751  decreased coverage  0.000264072  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1555  CDS  NC_011312  1666969  1667142  174  ribosome modulation factor  YP_002262987  decreased coverage  0.000509033  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1556  CDS  NC_011312  1667298  1667816  519  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_002262988  decreased coverage  0.000942388  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1584  CDS  NC_011312  1694251  1695294  1044  spermidine/putrescine-binding periplasmic protein precursor (SPBP)  YP_002263016  decreased coverage  0.00366918  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1592  CDS  NC_011312  1701252  1701584  333  hypothetical protein  YP_002263024  decreased coverage  0.00234207  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1593  CDS  NC_011312  1701633  1701962  330  hypothetical protein  YP_002263025  decreased coverage  0.00265658  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1624  CDS  NC_011312  1730343  1730993  651  isoprenoid biosynthesis protein with amidotransferase-like domain  YP_002263054  decreased coverage  0.000261607  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1733  CDS  NC_011312  1846340  1847323  984  phenylalanyl-tRNA synthetase subunit alpha  YP_002263147  decreased coverage  0.000948245  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1736  CDS  NC_011312  1850439  1850861  423  transposase  YP_002263148  decreased coverage  0.000306509  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1751  misc_feature  NC_011312  1865702  1866447  746      decreased coverage  0.00759989  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1752  CDS  NC_011312  1866457  1867137  681  TonB system transport protein ExbB1  YP_002263160  decreased coverage  0.00726097  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1753  CDS  NC_011312  1867137  1867562  426  TonB system transport protein ExbD1  YP_002263161  decreased coverage  0.00438106  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1762  CDS  NC_011312  1874557  1875639  1083  putative peptidase  YP_002263170  decreased coverage  0.0051203  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1819  CDS  NC_011312  1943870  1944973  1104  outer membrane protein A  YP_002263220  decreased coverage  0.00533384  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1823  CDS  NC_011312  1949064  1949618  555  putative exonuclease  YP_002263222  decreased coverage  0.000276682  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I1872  CDS  NC_011312  2006399  2006980  582  Na(+)-translocating NADH-quinone reductase subunit E  YP_002263268  decreased coverage  0.00036506  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2238  CDS  NC_011312  2408225  2409250  1026  putative glycerol-3-phosphate acyltransferase PlsX  YP_002263603  decreased coverage  0.000746404  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2360  CDS  NC_011312  2535025  2535930  906  putative Dyp-type peroxidase  YP_002263716  decreased coverage  0.00056138  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2365  CDS  NC_011312  2538247  2538720  474  cytochrome C-type protein NapB precursor  YP_002263721  decreased coverage  0.00904939  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2425  CDS  NC_011312  2595447  2596178  732  uridylate kinase  YP_002263779  decreased coverage  0.000236228  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2480  CDS  NC_011312  2654415  2655656  1242  integrase, phage family  YP_002263830  decreased coverage  0.00704938  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2524  CDS  NC_011312  2706343  2707308  966  GTP-binding protein Era  YP_002263872  decreased coverage  0.00258575  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2565  CDS  NC_011312  2757664  2758359  696  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase  YP_002263912  decreased coverage  0.000339129  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2566  CDS  NC_011312  2758425  2759378  954  adenosylcobinamide-phosphate synthase  YP_002263913  decreased coverage  0.000687479  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2664  CDS  NC_011312  2881487  2881915  429  50S ribosomal protein L13  YP_002264002  decreased coverage  0.000266621  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2665  CDS  NC_011312  2882194  2883300  1107  hypothetical protein  YP_002264003  decreased coverage  0.00155012  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2668  CDS  NC_011312  2885461  2886525  1065  exported serine protease  YP_002264006  decreased coverage  0.00113896  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2838  CDS  NC_011312  3077458  3078426  969  tRNA-dihydrouridine synthase B  YP_002264172  decreased coverage  0.00370185  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2839  CDS  NC_011312  3078449  3078745  297  DNA-binding protein Fis  YP_002264173  decreased coverage  0.00104382  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2840  CDS  NC_011312  3078885  3079229  345  hypothetical protein  YP_002264174  decreased coverage  0.00506784  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2845  CDS  NC_011312  3084535  3085239  705  putative lipoprotein  YP_002264179  decreased coverage  0.00807685  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I2846  CDS  NC_011312  3085279  3085551  273  DNA-binding protein HU-alpha  YP_002264180  decreased coverage  0.00368421  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3098t  tRNA  NC_011312  125644  125716  73  tRNA-His    decreased coverage  0.000103894  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3099t  tRNA  NC_011312  125805  125878  74  tRNA-Pro    decreased coverage  0.000107843  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3100t  tRNA  NC_011312  125924  125996  73  tRNA-His    decreased coverage  0.000111916  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3101t  tRNA  NC_011312  126084  126157  74  tRNA-Pro    decreased coverage  0.000115103  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3156s  misc_RNA  NC_011312  910342  910411  70  anti-sense RNA (RNA-OUT)    decreased coverage  0.000903025  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3164t  tRNA  NC_011312  2007115  2007187  73  tRNA-Asn    decreased coverage  0.000133455  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3173t  tRNA  NC_011312  2293474  2293546  73  tRNA-Gly    decreased coverage  0.00082195  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3174t  tRNA  NC_011312  2293584  2293667  84  tRNA-Leu    decreased coverage  0.000836085  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3175t  tRNA  NC_011312  2293779  2293851  73  tRNA-Gly    decreased coverage  0.000787171  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3176t  tRNA  NC_011312  2293858  2293928  71  tRNA-Cys    decreased coverage  0.000794009  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3191r  rRNA  NC_011312  2811244  2812780  1537  16S ribosomal RNA    decreased coverage  0.00140293  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3213s  misc_RNA  NC_011312  3132288  3132518  231  cobalamin riboswitch    decreased coverage  0.00305785  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3216s  misc_RNA  NC_011312  3252393  3252632  240  CsrA-regulating small RNA CsrB3    decreased coverage  0.00109836  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_I3217s  misc_RNA  NC_011312  3253287  3253523  237  CsrA-regulating small RNA CsrB2    decreased coverage  0.000991946  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0198  CDS  NC_011313  222484  223824  1341  two-component system sensor protein, histidine kinase  YP_002264553  decreased coverage  0.00722417  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0251  CDS  NC_011313  277234  278424  1191  hypothetical protein  YP_002264600  decreased coverage  0.00111835  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0333  CDS  NC_011313  376245  376559  315  transposase  YP_002264675  decreased coverage  0.00934106  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0341  CDS  NC_011313  383889  384830  942  membrane protein  YP_002264682  decreased coverage  0.00265216  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0347  misc_feature  NC_011313  388638  389803  1166      decreased coverage  0.00426916  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0348  CDS  NC_011313  389899  390465  567  transposase  YP_002264688  decreased coverage  0.00547365  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0349  CDS  NC_011313  390483  390905  423  transposase  YP_002264689  decreased coverage  0.00431305  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0365  CDS  NC_011313  409246  409353  108  hypothetical protein  YP_002264704  decreased coverage  0.00914399  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0372  CDS  NC_011313  414021  415307  1287  type II/IV secretion system protein, ATP binding domain  YP_002264711  decreased coverage  0.00402347  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0402  CDS  NC_011313  452998  453357  360  hypothetical protein  YP_002264739  decreased coverage  0.00249304  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0409  CDS  NC_011313  460285  460692  408  hypothetical protein  YP_002264746  decreased coverage  0.000857637  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0410  misc_feature  NC_011313  460821  461126  306      decreased coverage  0.000716844  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0558  CDS  NC_011313  613475  613732  258  hypothetical protein  YP_002264884  decreased coverage  0.00365448  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0559  CDS  NC_011313  613740  614264  525  hypothetical protein, putative phage gene  YP_002264885  decreased coverage  0.00600016  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0560  CDS  NC_011313  614957  615361  405  hypothetical protein, putative phage gene  YP_002264886  decreased coverage  0.00595244  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0645  CDS  NC_011313  696082  696309  228  hypothetical protein  YP_002264964  decreased coverage  0.00335609  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0646  CDS  NC_011313  696339  696875  537  molybdenum cofactor biosynthesis protein MogA  YP_002264965  decreased coverage  0.00473136  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0674  CDS  NC_011313  738870  740093  1224  sodium/glutamate symport carrier protein (glutamate permease)  YP_002264991  decreased coverage  0.00660523  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0676  CDS  NC_011313  742420  743463  1044  hypothetical protein  YP_002264993  decreased coverage  0.00398993  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0729  CDS  NC_011313  803939  805276  1338  condesin subunit F  YP_002265041  decreased coverage  0.00740317  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_II0834  CDS  NC_011313  920490  920867  378  hypothetical protein  YP_002265137  decreased coverage  0.000171191  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_p840_55  CDS  NC_011311  59510  61699  2190  putative beta-N-acetylhexosaminidase precursor  YP_002261545  decreased coverage  3.13171e-07  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
VSAL_p840_58  CDS  NC_011311  67397  69208  1812  hypothetical protein  YP_002261548  decreased coverage  0.00445393  n/a    Aliivibrio salmonicida LFI1238  Bacteria 
 
 
-
 
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