163 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Haur_0014  CDS  NC_009972  16213  18150  1938  DNA primase  YP_001542794  decreased coverage  0.0081672  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0029  CDS  NC_009972  37027  38031  1005  heat shock protein DnaJ domain-containing protein  YP_001542809  decreased coverage  7.66624e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0117  CDS  NC_009972  151209  152342  1134  aminotransferase class I and II  YP_001542897  decreased coverage  0.00105897  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0164  CDS  NC_009972  197084  197620  537  hypothetical protein  YP_001542944  decreased coverage  1.80891e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0165  CDS  NC_009972  197673  198344  672  phosphoribosyltransferase  YP_001542945  decreased coverage  2.98653e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0166  CDS  NC_009972  198310  198747  438  hypothetical protein  YP_001542946  decreased coverage  9.91179e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0167  CDS  NC_009972  198843  199397  555  GCN5-related N-acetyltransferase  YP_001542947  decreased coverage  2.2315e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0185  CDS  NC_009972  214663  215820  1158  PilT domain-containing protein  YP_001542965  decreased coverage  3.20699e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0192  CDS  NC_009972  223097  225274  2178  hypothetical protein  YP_001542972  decreased coverage  0.00309311  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0261  CDS  NC_009972  306391  307551  1161  ABC transporter periplasmic-binding protein  YP_001543041  decreased coverage  0.000633057  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0285  CDS  NC_009972  333436  334392  957  glycosidase PH1107-related  YP_001543065  decreased coverage  0.00104033  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0359  CDS  NC_009972  429127  430707  1581  FAD dependent oxidoreductase  YP_001543138  decreased coverage  0.000963274  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0384  CDS  NC_009972  455418  456086  669  HAD family hydrolase  YP_001543163  decreased coverage  4.5535e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0385  CDS  NC_009972  456125  456346  222  hypothetical protein  YP_001543164  decreased coverage  9.13055e-07  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0386  CDS  NC_009972  456723  457100  378  aspartate 1-decarboxylase  YP_001543165  decreased coverage  1.66101e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0387  CDS  NC_009972  457158  458393  1236  molybdenum cofactor synthesis domain-containing protein  YP_001543166  decreased coverage  3.55473e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0397  CDS  NC_009972  465641  467380  1740  von Willebrand factor type A  YP_001543176  decreased coverage  0.00126629  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0418  CDS  NC_009972  486955  488607  1653  hypothetical protein  YP_001543197  decreased coverage  0.000875198  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0490  CDS  NC_009972  571828  572697  870  5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase  YP_001543269  decreased coverage  4.77991e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0505  CDS  NC_009972  588521  589498  978  aminoglycoside phosphotransferase  YP_001543284  decreased coverage  0.00132801  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0523    NC_009972  608993  610381  1389      decreased coverage  0.000394728  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0531  CDS  NC_009972  618720  619586  867  zinc finger SWIM domain-containing protein  YP_001543307  decreased coverage  7.04141e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0684  CDS  NC_009972  786605  788401  1797  ABC transporter related  YP_001543460  decreased coverage  0.000210902  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0759  CDS  NC_009972  861960  862823  864  blue (type1) copper domain-containing protein  YP_001543535  decreased coverage  0.00521723  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0767  CDS  NC_009972  868761  868937  177  ribosomal protein L34  YP_001543543  decreased coverage  8.70464e-07  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0773  CDS  NC_009972  873880  875247  1368  hypothetical protein  YP_001543549  decreased coverage  4.2468e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0806  CDS  NC_009972  910562  912013  1452  hypothetical protein  YP_001543582  decreased coverage  0.000470331  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0892  CDS  NC_009972  1019600  1020640  1041  LacI family transcription regulator  YP_001543668  decreased coverage  0.00803151  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0966  CDS  NC_009972  1107370  1109499  2130  hypothetical protein  YP_001543742  decreased coverage  0.000682742  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_0985  CDS  NC_009972  1128387  1130501  2115  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_001543761  decreased coverage  0.000494124  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1008  CDS  NC_009972  1152262  1153950  1689  CHAP domain-containing protein  YP_001543784  decreased coverage  0.00120354  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1009  CDS  NC_009972  1154055  1154279  225  LuxR family transcriptional regulator  YP_001543785  decreased coverage  0.000248163  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1109  CDS  NC_009972  1271016  1271435  420  hypothetical protein  YP_001543885  decreased coverage  1.77487e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1110  CDS  NC_009972  1271592  1272164  573  phage shock protein C, PspC  YP_001543886  decreased coverage  3.17198e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1154  CDS  NC_009972  1326004  1328187  2184  hypothetical protein  YP_001543930  decreased coverage  0.00101932  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1170  CDS  NC_009972  1342627  1344708  2082  carbohydrate-binding CenC domain-containing protein  YP_001543946  decreased coverage  0.000394833  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1187  CDS  NC_009972  1364464  1364874  411  hypothetical protein  YP_001543963  decreased coverage  1.66845e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1188  CDS  NC_009972  1364922  1366547  1626  FHA domain-containing protein  YP_001543964  decreased coverage  0.00110568  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1205  CDS  NC_009972  1387981  1389594  1614  hypothetical protein  YP_001543981  decreased coverage  0.000167007  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1206  CDS  NC_009972  1389785  1390204  420  BadM/Rrf2 family transcriptional regulator  YP_001543982  decreased coverage  0.00151678  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1290  CDS  NC_009972  1500764  1501069  306  hypothetical protein  YP_001544066  decreased coverage  0.00352814  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1308  CDS  NC_009972  1518697  1519842  1146  GAF sensor signal transduction histidine kinase  YP_001544084  decreased coverage  0.000110665  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1411  CDS  NC_009972  1625411  1627195  1785  aspartyl-tRNA synthetase  YP_001544183  decreased coverage  0.00209555  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1415  CDS  NC_009972  1631536  1632963  1428  EmrB/QacA family drug resistance transporter  YP_001544187  decreased coverage  0.00176967  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1444  CDS  NC_009972  1677569  1678372  804  orotidine 5'-phosphate decarboxylase  YP_001544216  decreased coverage  5.34867e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1503  CDS  NC_009972  1752250  1753212  963  alcohol dehydrogenase  YP_001544275  decreased coverage  0.00185871  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1513  CDS  NC_009972  1762878  1764023  1146  DNA polymerase III, beta subunit  YP_001544285  decreased coverage  1.66783e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1514  CDS  NC_009972  1764576  1766438  1863  beta-lactamase  YP_001544286  decreased coverage  0.00027695  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1518  CDS  NC_009972  1770341  1772545  2205  coagulation factor 5/8 type domain-containing protein  YP_001544290  decreased coverage  0.000763318  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1524  CDS  NC_009972  1776332  1777873  1542  transcriptional antiterminator, BglG  YP_001544296  decreased coverage  0.000100792  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1549  CDS  NC_009972  1801430  1802167  738  hypothetical protein  YP_001544320  decreased coverage  6.40295e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1578  CDS  NC_009972  1834899  1835723  825  binding-protein-dependent transport systems inner membrane component  YP_001544349  decreased coverage  0.000362296  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1598  CDS  NC_009972  1853285  1855312  2028  hypothetical protein  YP_001544369  decreased coverage  0.000695683  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1666  CDS  NC_009972  1933604  1934971  1368  cellulose-binding family II protein  YP_001544437  decreased coverage  4.49243e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1693  CDS  NC_009972  1967519  1968334  816  tryptophan synthase subunit alpha  YP_001544464  decreased coverage  0.000483828  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1694  CDS  NC_009972  1968472  1969548  1077  permease  YP_001544465  decreased coverage  1.86998e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1723  CDS  NC_009972  2006455  2006859  405  hypothetical protein  YP_001544494  decreased coverage  6.00276e-07  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1897  CDS  NC_009972  2288693  2290765  2073  extracellular solute-binding protein  YP_001544668  decreased coverage  0.000383854  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1938  CDS  NC_009972  2350188  2351510  1323  transposase IS4 family protein  YP_001544709  decreased coverage  6.06768e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1959  CDS  NC_009972  2387999  2388364  366  hypothetical protein  YP_001544730  decreased coverage  0.00461889  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_1963  CDS  NC_009972  2398939  2400993  2055  sodium/hydrogen exchanger  YP_001544734  decreased coverage  0.000770592  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2251  CDS  NC_009972  2869224  2871887  2664  hypothetical protein  YP_001545019  decreased coverage  0.00410803  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2285  CDS  NC_009972  2925029  2925832  804  aspartate/glutamate/uridylate kinase  YP_001545053  decreased coverage  6.52943e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2310  CDS  NC_009972  2950720  2951316  597  nicotinate (nicotinamide) nucleotide adenylyltransferase  YP_001545078  decreased coverage  0.000142924  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2351  CDS  NC_009972  2999749  3000705  957  ribokinase-like domain-containing protein  YP_001545119  decreased coverage  1.53207e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2381  CDS  NC_009972  3033183  3034628  1446  hypothetical protein  YP_001545149  decreased coverage  0.00647578  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2484  CDS  NC_009972  3176032  3176313  282  CRISPR-associated Cas2 family protein  YP_001545250  decreased coverage  0.00090653  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2507  CDS  NC_009972  3202591  3204132  1542  type II secretion system protein E  YP_001545273  decreased coverage  0.000823712  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2508  CDS  NC_009972  3204249  3205688  1440  hypothetical protein  YP_001545274  decreased coverage  0.000331418  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2577  CDS  NC_009972  3304788  3305075  288  hypothetical protein  YP_001545343  decreased coverage  1.15576e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2578  CDS  NC_009972  3305114  3305443  330  hypothetical protein  YP_001545344  decreased coverage  1.31032e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2579  CDS  NC_009972  3305489  3305788  300  hypothetical protein  YP_001545345  decreased coverage  1.07561e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2584  CDS  NC_009972  3317588  3318574  987  hypothetical protein  YP_001545350  decreased coverage  1.92335e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2585  CDS  NC_009972  3318596  3319393  798  hypothetical protein  YP_001545351  decreased coverage  1.03972e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2646  CDS  NC_009972  3394887  3397325  2439  glycoside hydrolase family protein  YP_001545412  decreased coverage  0.00270036  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2705  CDS  NC_009972  3458545  3459657  1113  calcium/cation antiporter  YP_001545471  decreased coverage  1.50317e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2798  CDS  NC_009972  3557303  3558775  1473  integral membrane sensor signal transduction histidine kinase  YP_001545564  decreased coverage  7.74606e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2825  CDS  NC_009972  3593304  3593561  258  hypothetical protein  YP_001545591  decreased coverage  1.0002e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2857  CDS  NC_009972  3627696  3630149  2454  spermidine synthase  YP_001545623  decreased coverage  0.00246642  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2889  CDS  NC_009972  3659780  3660430  651  TetR family transcriptional regulator  YP_001545655  decreased coverage  0.00514184  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2891  CDS  NC_009972  3661984  3663357  1374  cytochrome P450  YP_001545657  decreased coverage  0.00974198  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2904  CDS  NC_009972  3673041  3673394  354  TraR/DksA family transcriptional regulator  YP_001545670  decreased coverage  9.08818e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2905  CDS  NC_009972  3673556  3674629  1074  hypothetical protein  YP_001545671  decreased coverage  0.000828177  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2910  CDS  NC_009972  3681829  3683091  1263  peptidase M48 Ste24p  YP_001545676  decreased coverage  4.66586e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2911  CDS  NC_009972  3683244  3684737  1494  carboxypeptidase Taq  YP_001545677  decreased coverage  9.70624e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2935  CDS  NC_009972  3710278  3711303  1026  hypothetical protein  YP_001545701  decreased coverage  0.000152042  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_2936  CDS  NC_009972  3711300  3711812  513  hypothetical protein  YP_001545702  decreased coverage  2.88111e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3027  CDS  NC_009972  3822786  3824246  1461  tRNA(Ile)-lysidine synthetase  YP_001545793  decreased coverage  0.00722625  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3040  CDS  NC_009972  3839583  3840689  1107  serine/threonine protein kinase  YP_001545806  decreased coverage  2.0347e-05  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3095  CDS  NC_009972  3903033  3904538  1506  RNA-binding S1 domain-containing protein  YP_001545861  decreased coverage  0.000127417  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3105  CDS  NC_009972  3917677  3919575  1899  peptidase M14 carboxypeptidase A  YP_001545871  decreased coverage  0.000214938  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3111  CDS  NC_009972  3924733  3926151  1419  carboxyl-terminal protease  YP_001545877  decreased coverage  0.000358486  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3112  CDS  NC_009972  3926198  3927376  1179  tyramine oxidase  YP_001545878  decreased coverage  0.00819948  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3119  CDS  NC_009972  3937186  3937749  564  hypothetical protein  YP_001545885  decreased coverage  0.000478192  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3120    NC_009972  3938039  3938335  297      decreased coverage  0.000213264  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3142  CDS  NC_009972  3969829  3970518  690  cytidylate kinase  YP_001545907  decreased coverage  0.00253738  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3161  CDS  NC_009972  3990674  3991261  588  TetR family transcriptional regulator  YP_001545926  decreased coverage  0.000174477  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3164  CDS  NC_009972  3995117  3997165  2049  serine/threonine protein kinase  YP_001545929  decreased coverage  0.00493454  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3165  CDS  NC_009972  3997511  3998218  708  hypothetical protein  YP_001545930  decreased coverage  7.44964e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
Haur_3186  CDS  NC_009972  4030595  4031647  1053  parB-like partition protein  YP_001545951  decreased coverage  8.42796e-06  n/a    Herpetosiphon aurantiacus ATCC 23779  Bacteria 
 
 
-
 
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