25 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pnuc_0020  CDS  NC_009379  19568  20443  876  F0F1 ATP synthase subunit A  YP_001154806  decreased coverage  0.00150016  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0171  CDS  NC_009379  166757  167986  1230  cell division protein FtsA  YP_001154956  decreased coverage  1.30276e-05  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0194  CDS  NC_009379  191192  191503  312  50S ribosomal protein L21  YP_001154979  decreased coverage  3.99206e-05  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0251  CDS  NC_009379  249910  250854  945  hypothetical protein  YP_001155036  decreased coverage  0.00862283  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0252  CDS  NC_009379  250877  251644  768  hypothetical protein  YP_001155037  decreased coverage  0.00523387  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0274  CDS  NC_009379  270121  270624  504  OmpA/MotB domain-containing protein  YP_001155059  decreased coverage  0.00497769  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0402  CDS  NC_009379  392473  393720  1248  3-oxoacyl-(acyl carrier protein) synthase II  YP_001155186  decreased coverage  0.0090737  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0492  CDS  NC_009379  482120  482683  564  OmpA/MotB domain-containing protein  YP_001155276  decreased coverage  1.42767e-09  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0625  CDS  NC_009379  614445  615230  786  prolipoprotein diacylglyceryl transferase  YP_001155407  decreased coverage  5.03068e-09  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0777  CDS  NC_009379  777485  778051  567  colicin V production protein  YP_001155559  decreased coverage  1.36777e-08  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0778  CDS  NC_009379  778056  779594  1539  amidophosphoribosyltransferase  YP_001155560  decreased coverage  1.28601e-07  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0889  CDS  NC_009379  881968  882849  882  phosphomethylpyrimidine kinase  YP_001155669  decreased coverage  6.98623e-05  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_0890  CDS  NC_009379  882980  883321  342  hypothetical protein  YP_001155670  decreased coverage  1.25467e-05  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1121  CDS  NC_009379  1165439  1166485  1047  hypothetical protein  YP_001155901  decreased coverage  0.00939938  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1228  CDS  NC_009379  1289930  1291411  1482  transcription elongation factor NusA  YP_001156007  decreased coverage  0.00625796  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1253  CDS  NC_009379  1317826  1319280  1455  nitrogen metabolism transcriptional regulator, NtrC, Fis family  YP_001156031  decreased coverage  0.000517304  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1294  CDS  NC_009379  1365862  1366563  702  hypothetical protein  YP_001156072  decreased coverage  3.65925e-09  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1439  CDS  NC_009379  1510053  1510850  798  UDP-N-acetylglucosamine acyltransferase  YP_001156217  decreased coverage  0.00452146  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1440  CDS  NC_009379  1510850  1511299  450  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001156218  decreased coverage  0.00460863  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1549  CDS  NC_009379  1618445  1619623  1179  extracellular ligand-binding receptor  YP_001156327  decreased coverage  0.000137786  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1635  CDS  NC_009379  1701823  1703124  1302  major facilitator transporter  YP_001156413  decreased coverage  3.73492e-06  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1813  CDS  NC_009379  1893488  1893982  495  phosphoribosylaminoimidazole carboxylase, catalytic subunit  YP_001156590  decreased coverage  5.9548e-05  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_1814  CDS  NC_009379  1894023  1894919  897  phosphoribosylaminoimidazole-succinocarboxamide synthase  YP_001156591  decreased coverage  0.000663783  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_2026  CDS  NC_009379  2098320  2098640  321  histone family protein DNA-binding protein  YP_001156801  decreased coverage  7.60647e-06  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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Pnuc_2027  CDS  NC_009379  2098718  2099083  366  hypothetical protein  YP_001156802  decreased coverage  8.1553e-06  n/a    Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria 
 
 
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