81 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
DhcVS_1042  CDS  NC_013552  968201  969091  891  hypothetical protein  YP_003330487  decreased coverage  1.95409e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
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DhcVS_1044  CDS  NC_013552  970375  971760  1386  argininosuccinate lyase  YP_003330489  decreased coverage  1.56522e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1045  CDS  NC_013552  971770  971958  189  ribosomal protein L28  YP_003330490  decreased coverage  3.42446e-13  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
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DhcVS_1057  CDS  NC_013552  983957  984376  420  hypothetical protein  YP_003330502  decreased coverage  2.25436e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1063  CDS  NC_013552  987298  988809  1512  radical SAM domain protein  YP_003330508  decreased coverage  0.000246609  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1069  CDS  NC_013552  995504  996352  849  serine protease, DegP/HtrA family  YP_003330514  decreased coverage  1.28522e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1102  CDS  NC_013552  1022783  1023331  549  iron-sulfur flavoprotein  YP_003330545  decreased coverage  0.000321891  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1109  CDS  NC_013552  1027370  1027576  207  ribosomal protein L31  YP_003330552  decreased coverage  4.39538e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1141  CDS  NC_013552  1053728  1054843  1116  Tfp pilus assembly protein pilus retraction ATPase  YP_003330583  decreased coverage  0.000163324  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1142  CDS  NC_013552  1054981  1055346  366  general secretion  YP_003330584  decreased coverage  3.3549e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1149  CDS  NC_013552  1061858  1062862  1005  radical SAM domain protein  YP_003330591  decreased coverage  3.3704e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1150  CDS  NC_013552  1062881  1063069  189  hypothetical protein  YP_003330592  decreased coverage  3.43389e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1157  CDS  NC_013552  1067363  1067644  282  hypothetical protein  YP_003330599  decreased coverage  0.000220051  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1183  CDS  NC_013552  1092104  1093141  1038  heat-inducible transcription repressor  YP_003330623  decreased coverage  5.56143e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1186  CDS  NC_013552  1095556  1096053  498  hypothetical protein  YP_003330626  decreased coverage  1.07945e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1188  CDS  NC_013552  1096558  1099578  3021  BNR/Asp-box repeat domain protein  YP_003330628  decreased coverage  0.00105503  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1234  CDS  NC_013552  1139392  1139973  582  2 -5 RNA ligase  YP_003330669  decreased coverage  0.00152481  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1272  CDS  NC_013552  1170322  1170777  456  transcriptional regulator, MarR family  YP_003330701  decreased coverage  2.58354e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1391  CDS  NC_013552  1286070  1286645  576  hypothetical protein  YP_003330818  decreased coverage  1.57564e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1414  CDS  NC_013552  1313387  1313824  438  hypothetical protein  YP_003330841  decreased coverage  2.01843e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1415  CDS  NC_013552  1313845  1314276  432  transcriptional regulator, MerR family  YP_003330842  decreased coverage  5.99633e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1419  CDS  NC_013552  1321388  1321837  450  transcriptional regulator, MarR family  YP_003330846  decreased coverage  1.2413e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1425  CDS  NC_013552  1328611  1329045  435  transcriptional regulator, MarR family  YP_003330852  decreased coverage  1.83879e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1440  CDS  NC_013552  1341891  1343381  1491  glutamyl-tRNA(Gln) amidotransferase, B subunit  YP_003330867  decreased coverage  0.000724342  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1457  CDS  NC_013552  1357364  1357951  588  transcription regulator, TetR family  YP_003330883  decreased coverage  2.22834e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1469  CDS  NC_013552  1368004  1368384  381  hypothetical protein  YP_003330894  decreased coverage  2.39156e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1475  CDS  NC_013552  1372385  1373050  666  methyltransferase, UbiE/COQ5 family  YP_003330900  decreased coverage  5.76982e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1520  CDS  NC_013552  1410052  1410750  699  Zn-dependent protease  YP_003330943  decreased coverage  0.000439151  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_176  CDS  NC_013552  174337  177318  2982  molybdopterin oxidoreductase, formate dehydrogenase alpha subunit  YP_003329675  decreased coverage  0.000885934  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_177  CDS  NC_013552  177698  178276  579  methyltransferase  YP_003329676  decreased coverage  1.32935e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_182  CDS  NC_013552  180569  183010  2442  leucyl-tRNA synthetase  YP_003329681  decreased coverage  0.00206077  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_187  CDS  NC_013552  186030  186536  507  rubredoxin-type iron-sulfur protein  YP_003329686  decreased coverage  3.49376e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_188  CDS  NC_013552  186624  187535  912  hypothetical protein  YP_003329687  decreased coverage  0.000488554  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_190  CDS  NC_013552  188757  189989  1233  histidinol-phosphate phosphatase protein/glycosyl transferase  YP_003329689  decreased coverage  0.00438992  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_194  CDS  NC_013552  192548  193522  975  oxidoreductase, aldo/keto reductase family  YP_003329693  decreased coverage  0.00647949  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_20  CDS  NC_013552  19520  20824  1305  hypothetical protein  YP_003329528  decreased coverage  0.00632625  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_24  CDS  NC_013552  23425  23925  501  competence protein  YP_003329531  decreased coverage  1.37155e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_282  CDS  NC_013552  275753  276802  1050  S-adenosyl-methyltransferase  YP_003329771  decreased coverage  4.42175e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_328  CDS  NC_013552  319835  320980  1146  IMP dehydrogenase protein  YP_003329814  decreased coverage  2.57669e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_329  CDS  NC_013552  321181  322005  825  tetrapyrrole methylase  YP_003329815  decreased coverage  3.93533e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_359  CDS  NC_013552  346158  346508  351  nucleoside diphosphate kinase  YP_003329844  decreased coverage  7.60928e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_375  CDS  NC_013552  361925  362608  684  hypothetical protein  YP_003329859  decreased coverage  4.08583e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_423  CDS  NC_013552  403227  404063  837  ribosomal protein S3  YP_003329906  decreased coverage  6.52723e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_429a  CDS  NC_013552  406244  406429  186  30S ribosomal protein S14  YP_003864090  decreased coverage  6.56242e-12  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_430  CDS  NC_013552  406463  406858  396  ribosomal protein S8  YP_003329913  decreased coverage  2.83482e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_454  CDS  NC_013552  421046  422302  1257  S-adenosylhomocysteine hydrolase  YP_003329936  decreased coverage  1.35166e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_455  CDS  NC_013552  422310  423872  1563  hypothetical protein  YP_003329937  decreased coverage  0.000133416  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_463  CDS  NC_013552  429598  430011  414  acyl dehydratase  YP_003329945  decreased coverage  1.21955e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_464  CDS  NC_013552  429998  430558  561  acetyltransferase, GNAT family  YP_003329946  decreased coverage  2.40753e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_491  CDS  NC_013552  460468  462030  1563  DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)  YP_003329973  decreased coverage  4.48627e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_50  CDS  NC_013552  41249  43879  2631  alanyl-tRNA synthetase  YP_003329554  decreased coverage  0.000334801  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_54  rRNA  NC_013552  47031  49975  2945  23S ribosomal RNA    decreased coverage  0.00112496  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_552  CDS  NC_013552  522758  523696  939  nickel-dependent hydrogenase, group 3, small subunit  YP_003330032  decreased coverage  0.000367769  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_597  CDS  NC_013552  562418  563020  603  phosphoglycerate mutase family  YP_003330074  decreased coverage  6.81703e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_640  CDS  NC_013552  600491  600877  387  hypothetical protein  YP_003330109  decreased coverage  1.70615e-12  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_641  tRNA  NC_013552  600894  600968  75  tRNA-Met    decreased coverage  9.45354e-14  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_660  CDS  NC_013552  618046  620577  2532  hypothetical protein  YP_003330127  decreased coverage  0.000729643  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_689  CDS  NC_013552  643803  644456  654  translin  YP_003330154  decreased coverage  5.18414e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_719  CDS  NC_013552  669091  669846  756  ABC-type transport system involved in Fe-S cluster assembly ATPase component  YP_003330180  decreased coverage  5.72686e-08  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_730  CDS  NC_013552  678389  679486  1098  3-isopropylmalate dehydrogenase  YP_003330190  decreased coverage  1.28158e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_738  CDS  NC_013552  686700  688367  1668  dihydroxy-acid dehydratase  YP_003330198  decreased coverage  1.09399e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_747  CDS  NC_013552  695937  697013  1077  histidinol-phosphate aminotransferase  YP_003330207  decreased coverage  6.00675e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_761  CDS  NC_013552  707181  708317  1137  oxygen-independent coproporphyrinogen III oxidase  YP_003330220  decreased coverage  2.02557e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_829  CDS  NC_013552  771592  772236  645  hypothetical protein  YP_003330287  decreased coverage  6.04863e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_830  tRNA  NC_013552  772383  772458  76  tRNA-Arg    decreased coverage  2.13386e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_838  CDS  NC_013552  779341  779973  633  hypothetical protein  YP_003330294  decreased coverage  3.26909e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_857  CDS  NC_013552  798275  799738  1464  transcription elongation factor  YP_003330312  decreased coverage  2.72174e-07  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_862  CDS  NC_013552  803631  804005  375  ribosomal protein L7/L12  YP_003330317  decreased coverage  4.72874e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_869  CDS  NC_013552  806873  808075  1203  translation elongation factor  YP_003330324  decreased coverage  2.80578e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_870  tRNA  NC_013552  808104  808179  76  tRNA-Thr    decreased coverage  1.36902e-13  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_871  tRNA  NC_013552  808242  808325  84  tRNA-Tyr    decreased coverage  1.64739e-13  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_872  tRNA  NC_013552  808366  808438  73  tRNA-Thr    decreased coverage  1.66459e-13  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_897  CDS  NC_013552  831119  831865  747  ribonuclease III  YP_003330345  decreased coverage  3.34707e-10  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_898  CDS  NC_013552  831895  832035  141  hypothetical protein  YP_003330346  decreased coverage  1.87348e-12  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_899  CDS  NC_013552  832057  832332  276  acylphosphatase-like protein  YP_003330347  decreased coverage  6.72405e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_916  CDS  NC_013552  849529  849936  408  single-stranded DNA-binding protein  YP_003330364  decreased coverage  2.32202e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_917  CDS  NC_013552  849984  850313  330  ribosomal protein S6  YP_003330365  decreased coverage  1.18903e-11  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_932  CDS  NC_013552  863746  865422  1677  ABC-type oligopeptide transport system, periplasmic component  YP_003330379  decreased coverage  2.68358e-06  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_961  CDS  NC_013552  894941  895762  822  hypothetical protein  YP_003330408  decreased coverage  0.0043963  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_962  CDS  NC_013552  895915  896610  696  hypothetical protein  YP_003330409  decreased coverage  1.32162e-05  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_990  CDS  NC_013552  923020  924285  1266  protein export protein  YP_003330435  decreased coverage  1.84854e-09  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
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