42 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Avi_0099  CDS  NC_011989  96572  96853  +  282  hypothetical protein  YP_002548055  decreased coverage  0.00804392  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_0343  CDS  NC_011989  296504  297481  -  978  NADH-ubiquinone oxidoreductase  YP_002548233  decreased coverage  0.00306764  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1099  CDS  NC_011989  928359  929621  +  1263  MFS permease  YP_002548790  decreased coverage  0.00745709  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1125  CDS  NC_011989  952540  953571  -  1032  transcriptional repressor LacI family  YP_002548808  decreased coverage  0.00370144  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1346  CDS  NC_011989  1127579  1127998  +  420  hypothetical protein  YP_002548966  decreased coverage  0.000547988  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1347  CDS  NC_011989  1128058  1128246  +  189  gene transfer agent (GTA) orfg10  YP_002548967  decreased coverage  0.000217924  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1350  CDS  NC_011989  1128866  1129501  +  636  hypothetical protein  YP_002548969  decreased coverage  0.00122834  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1365  CDS  NC_011989  1142229  1142687  +  459  cycL protein  YP_002548981  decreased coverage  0.00486765  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1678  CDS  NC_011989  1402058  1402903  -  846  hypothetical protein  YP_002549208  decreased coverage  0.00270694  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1679  CDS  NC_011989  1402975  1403337  -  363  hypothetical protein  YP_002549209  decreased coverage  0.000558133  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1741  CDS  NC_011989  1451733  1452422  +  690  ABC transporter nucleotide binding/ATPase protein (lipoprotein)  YP_002549254  decreased coverage  0.00216433  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1845  CDS  NC_011989  1535560  1535949  +  390  50S ribosomal protein L22  YP_002549328  decreased coverage  0.000645692  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_1846  CDS  NC_011989  1535982  1536662  +  681  30S ribosomal protein S3  YP_002549329  decreased coverage  0.00843492  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2168  CDS  NC_011989  1782133  1783050  +  918  ABC transporter membrane spanning protein (sugar)  YP_002549558  decreased coverage  0.00258855  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2192  CDS  NC_011989  1802475  1802762  -  288  hypothetical protein  YP_002549577  decreased coverage  0.00320638  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2286  CDS  NC_011989  1877410  1877988  +  579  cold shock protein  YP_002549643  decreased coverage  0.00549771  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2353  CDS  NC_011989  1923308  1923904  +  597  hypothetical protein  YP_002549683  decreased coverage  0.00441325  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2412  CDS  NC_011989  1984301  1984954  -  654  putative sulfite oxidase subunit YedZ  YP_002549727  decreased coverage  0.00136958  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2413  CDS  NC_011989  1984951  1985898  -  948  putative sulfite oxidase subunit YedY  YP_002549728  decreased coverage  0.00411856  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_2624  CDS  NC_011989  2171624  2172466  -  843  uroporphyrin-III C-methyltransferase  YP_002549892  decreased coverage  0.0021256  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_3033  CDS  NC_011989  2523430  2524461  -  1032  hypothetical protein  YP_002550191  decreased coverage  0.00438308  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_3507  CDS  NC_011989  2907370  2908185  -  816  cell division inhibitor  YP_002550529  decreased coverage  0.00615597  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_3915  CDS  NC_011989  3275179  3275826  +  648  2-dehydro-3-deoxy-6-phosphogalactonate aldolase  YP_002550838  decreased coverage  0.0068917  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_4070  CDS  NC_011989  3424339  3424695  -  357  hypothetical protein  YP_002550954  decreased coverage  0.00290453  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_4102  CDS  NC_011989  3457150  3457422  -  273  transcriptional regulator ArsR family  YP_002550979  decreased coverage  0.00250446  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_4507  tmRNA  NC_011989  2347678  2347991  +  314  10Sa RNA SsrA (tmRNA)    decreased coverage  0.00053316  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5394  CDS  NC_011988  395436  396473  -  1038  transcriptional regulator LacI family  YP_002547243  decreased coverage  0.00772538  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5585  CDS  NC_011988  596372  597466  +  1095  ABC transporter galacturonide binding/ATPase protein  YP_002547398  decreased coverage  0.00523647  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5619  CDS  NC_011988  634324  634605  +  282  polyketide synthase  YP_002547429  decreased coverage  0.00123968  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5643  CDS  NC_011988  668839  669705  +  867  ABC transporter  YP_002547448  decreased coverage  0.00533049  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5849  CDS  NC_011988  868110  868916  -  807  hypothetical protein  YP_002547615  decreased coverage  0.00315108  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5851  CDS  NC_011988  869031  869795  -  765  LamB/YcsF family protein  YP_002547616  decreased coverage  0.00357056  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_5971  CDS  NC_011988  986696  987721  -  1026  ABC transporter substrate binding protein (sugar)  YP_002547714  decreased coverage  0.00726122  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_6249  CDS  NC_011988  1239973  1240836  +  864  transcriptional regulator RpiR family  YP_002547936  decreased coverage  0.00357056  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_7054  CDS  NC_011981  47162  48556  -  1395  hypothetical protein  YP_002539492  decreased coverage  0.00922196  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_7418  CDS  NC_011981  391027  391692  +  666  gamma-carboxymuconolactone decarboxylase subunit  YP_002539775  decreased coverage  0.0051102  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_7481  CDS  NC_011981  438409  439251  +  843  hypothetical protein  YP_002539818  decreased coverage  0.0069483  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_7679  CDS  NC_011981  608583  609776  +  1194  Permeases of the major facilitator superfamily  YP_002539963  decreased coverage  0.00772538  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_8116  CDS  NC_011982  80677  81684  +  1008  integrase/recombinase  YP_002540040  decreased coverage  0.000851463  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_8146  CDS  NC_011982  98782  99897  +  1116  spermidine/putrescine binding protein of ABC transporter  YP_002540060  decreased coverage  0.00458388  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_8325  CDS  NC_011982  250013  250867  -  855  conjugal transfer protein TrbG  YP_002540176  decreased coverage  0.000831167  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Avi_9647  CDS  NC_011991  118069  119406  -  1338  conjugal transfer protein TrbI  YP_002551478  decreased coverage  0.000862164  n/a    Agrobacterium vitis S4  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>