39 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Cla_0059  CDS  NC_012039  57221  57796  576  50S ribosomal protein L3  YP_002574676  decreased coverage  6.39539e-19  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0101  CDS  NC_012039  85928  86509  582  imidazole glycerol phosphate synthase subunit HisH  YP_002574718  decreased coverage  1.99999e-16  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0107  CDS  NC_012039  90993  93437  2445  flagellar hook protein FlgE  YP_002574724  decreased coverage  3.70744e-12  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0168  CDS  NC_012039  151821  153737  1917  motility accessory factor  YP_002574782  decreased coverage  8.47186e-05  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0194  CDS  NC_012039  173928  174812  885  F0F1 ATP synthase subunit gamma  YP_002574808  decreased coverage  0.000126351  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0200  CDS  NC_012039  178407  179606  1200  translocation protein TolB  YP_002574814  decreased coverage  7.01864e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0344  CDS  NC_012039  316474  318786  2313  type I restriction-modification system, R subunit  YP_002574955  decreased coverage  1.08762e-06  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0346  CDS  NC_012039  319405  320193  789  hypothetical protein  YP_002574957  decreased coverage  9.69355e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0348  CDS  NC_012039  321450  322478  1029  hypothetical protein  YP_002574959  decreased coverage  5.20981e-05  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0435  CDS  NC_012039  411466  412206  741  conserved hypothetical protein (DUF328 domain protein)  YP_002575044  decreased coverage  5.30905e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0436  tRNA  NC_012039  412298  412370  73  tRNA-Thr    decreased coverage  2.6283e-08  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0437  tRNA  NC_012039  412421  412503  83  tRNA-Tyr    decreased coverage  2.53794e-08  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0592  CDS  NC_012039  564754  565512  759  amino acid ABC transporter, permease/substrate-binding lipoprotein  YP_002575176  decreased coverage  1.43889e-15  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0730  CDS  NC_012039  698695  699663  969  hypothetical protein  YP_002575310  decreased coverage  1.90303e-05  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0735  CDS  NC_012039  702613  703680  1068  integrase/recombinase  YP_002575315  decreased coverage  0.000138239  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0841  CDS  NC_012039  800455  800922  468  hypothetical protein  YP_002575418  decreased coverage  2.57865e-15  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0864  CDS  NC_012039  820831  821631  801  hypothetical protein  YP_002575441  decreased coverage  7.60334e-18  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0873  CDS  NC_012039  829071  830465  1395  hypothetical protein  YP_002575450  decreased coverage  0.0096432  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0882    NC_012039  839367  840846  1480      decreased coverage  0.0012399  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0885  CDS  NC_012039  842150  843319  1170  hypothetical protein  YP_002575461  decreased coverage  0.000693381  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_0890  CDS  NC_012039  849165  849992  828  NAD-dependent protein deacetylase (SIR2 family), putative  YP_002575466  decreased coverage  0.0094897  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1008  CDS  NC_012039  961441  963375  1935  tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase  YP_002575582  decreased coverage  0.00246463  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1145  CDS  NC_012039  1094158  1095519  1362  conserved hypothetical protein, putative sodium/sulfate transporter  YP_002575718  decreased coverage  0.00119531  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1151  CDS  NC_012039  1099057  1099815  759  hypothetical protein  YP_002575724  decreased coverage  9.6412e-13  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1233  CDS  NC_012039  1186722  1187615  894  conserved hypothetical protein, putative formyltransferase  YP_002575805  decreased coverage  6.67548e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1234  CDS  NC_012039  1187612  1188784  1173  flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase  YP_002575806  decreased coverage  4.98244e-08  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1236  CDS  NC_012039  1189797  1190687  891  formyltransferase, putative  YP_002575808  decreased coverage  3.69668e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1237  CDS  NC_012039  1190724  1191731  1008  NAD-dependent epimerase/dehydratase family protein  YP_002575809  decreased coverage  1.10601e-07  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1240  CDS  NC_012039  1192930  1194135  1206  glycosyltransferase  YP_002575811  decreased coverage  2.12379e-10  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1241  CDS  NC_012039  1194139  1195059  921  glycosyltransferase  YP_002575812  decreased coverage  2.61425e-06  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1269  CDS  NC_012039  1223891  1224295  405  conserved hypothetical protein, putative acyl-coA thioester hydrolase  YP_002575839  decreased coverage  0.00039467  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1314  CDS  NC_012039  1264891  1265856  966  3-oxoacyl-(acyl carrier protein) synthase III FabH2, putative  YP_002575883  decreased coverage  4.61797e-09  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1320  CDS  NC_012039  1270664  1271359  696  CMP-N-acetylneuraminic acid synthetase  YP_002575887  decreased coverage  2.96134e-11  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_1451  CDS  NC_012039  1391333  1393276  1944  BCCT (betaine/carnitine/choline) family transporter  YP_002576018  decreased coverage  4.18555e-13  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_a003  CDS  NC_012040  7383  7985  603  site-specific recombinase/resolvase  YP_002576127  decreased coverage  4.21132e-05  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_a004  CDS  NC_012040  8107  8331  225  hypothetical protein  YP_002576128  decreased coverage  0.000609171  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_a034  CDS  NC_012040  38950  40185  1236  DNA primase TraC  YP_002576158  decreased coverage  0.000906567  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_a040  CDS  NC_012040  44411  45121  711  hypothetical protein  YP_002576164  decreased coverage  2.92209e-08  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Cla_a041  CDS  NC_012040  45193  45465  273  hypothetical protein  YP_002576165  decreased coverage  1.21125e-09  n/a    Campylobacter lari RM2100  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>