222 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Franean1_0122  CDS  NC_009921  146934  147740  807  hypothetical protein  YP_001504495  decreased coverage  0.00259509  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0136  CDS  NC_009921  163552  165000  1449  peptidoglycan glycosyltransferase  YP_001504509  normal  decreased coverage  0.00209785  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0137  CDS  NC_009921  164997  166478  1482  cell cycle protein  YP_001504510  normal  0.882839  decreased coverage  0.000566285  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0138  CDS  NC_009921  166492  167895  1404  protein serine/threonine phosphatase  YP_001504511  normal  0.568402  decreased coverage  0.00197643  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0166  CDS  NC_009921  198508  199860  1353  hypothetical protein  YP_001504539  decreased coverage  0.00671267  normal  0.080695  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0168  CDS  NC_009921  201871  202785  915  dihydropteroate synthase  YP_001504541  decreased coverage  0.00447644  normal  0.140148  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0169  CDS  NC_009921  202782  203795  1014  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase  YP_001504542  decreased coverage  0.0060964  normal  0.143037  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0184  CDS  NC_009921  222282  224009  1728  hypothetical protein  YP_001504557  decreased coverage  0.00494452  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0367  CDS  NC_009921  435972  437561  1590  FHA domain-containing protein  YP_001504739  normal  0.216513  decreased coverage  0.000756141  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0368  CDS  NC_009921  437566  438852  1287  von Willebrand factor type A  YP_001504740  hitchhiker  0.00177271  decreased coverage  0.000715031  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0369  CDS  NC_009921  438959  440494  1536  protein serine/threonine phosphatase  YP_001504741  decreased coverage  0.0013966  hitchhiker  0.00252542  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0634  CDS  NC_009921  736123  737097  975  ATPase  YP_001504999  decreased coverage  3.06223e-06  normal  0.419184  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0635  CDS  NC_009921  737094  738779  1686  hypothetical protein  YP_001505000  decreased coverage  0.000516706  normal  0.674007  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0636  CDS  NC_009921  738776  741268  2493  transglutaminase domain-containing protein  YP_001505001  decreased coverage  0.00254265  normal  0.770826  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0661  CDS  NC_009921  775401  776855  1455  pyridoxal-dependent decarboxylase  YP_001505026  decreased coverage  0.000151703  normal  0.871149  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0723  CDS  NC_009921  840108  840863  756  ABC transporter related  YP_001505087  decreased coverage  0.00967662  normal  0.0967044  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0724  CDS  NC_009921  840918  841577  660  hypothetical protein  YP_001505088  decreased coverage  0.00634276  normal  0.0883262  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0730  CDS  NC_009921  848472  849200  729  TetR family transcriptional regulator  YP_001505094  decreased coverage  0.00296779  normal  0.0851548  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0747  CDS  NC_009921  872297  873199  903  tyrosinase  YP_001505111  normal  0.0871441  decreased coverage  1.43544e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0749  CDS  NC_009921  874044  875150  1107  hypothetical protein  YP_001505113  normal  decreased coverage  1.66658e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0750  CDS  NC_009921  875208  876269  1062  polysaccharide pyruvyl transferase  YP_001505114  normal  0.759816  decreased coverage  1.35712e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0751  CDS  NC_009921  876266  877420  1155  glycosyl transferase group 1  YP_001505115  decreased coverage  0.00694641  hitchhiker  0.000111123  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0790  CDS  NC_009921  917486  918769  1284  C-methyltransferase  YP_001505154  decreased coverage  0.00493713  normal  0.231188  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0836  CDS  NC_009921  979423  980085  663  DNA repair protein RadC  YP_001505200  decreased coverage  0.00741803  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0852  CDS  NC_009921  998673  1000499  1827  hypothetical protein  YP_001505216  decreased coverage  0.00483421  normal  0.421013  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0853  CDS  NC_009921  1000496  1001452  957  polysaccharide deacetylase  YP_001505217  decreased coverage  0.000296204  normal  0.358313  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0854  CDS  NC_009921  1001632  1001877  246  hypothetical protein  YP_001505218  decreased coverage  2.46194e-05  normal  0.183584  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0855  CDS  NC_009921  1001895  1002263  369  hypothetical protein  YP_001505219  decreased coverage  3.53066e-05  normal  0.184371  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0924  CDS  NC_009921  1074820  1075785  966  short-chain dehydrogenase/reductase SDR  YP_001505286  decreased coverage  0.00780913  normal  0.965318  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0936  CDS  NC_009921  1094806  1095135  330  transcription factor WhiB  YP_001505298  decreased coverage  0.000309133  normal  0.894525  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_0967  CDS  NC_009921  1129596  1130681  1086  biotin synthase  YP_001505329  decreased coverage  0.00736488  normal  0.128814  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1016  CDS  NC_009921  1198461  1198748  288  hypothetical protein  YP_001505378  decreased coverage  0.00501338  normal  0.90193  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1046  CDS  NC_009921  1226212  1227681  1470  histidine kinase  YP_001505408  decreased coverage  0.00874969  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1061  CDS  NC_009921  1250929  1252746  1818  FHA domain-containing protein  YP_001505423  decreased coverage  0.00105103  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1085  CDS  NC_009921  1294441  1295997  1557  aspartyl/glutamyl-tRNA amidotransferase subunit A  YP_001505447  decreased coverage  0.00466527  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1135  CDS  NC_009921  1356178  1357092  915  hypothetical protein  YP_001505495  decreased coverage  0.00586162  normal  0.0252856  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1142  CDS  NC_009921  1362042  1362317  276  hypothetical protein  YP_001505502  normal  0.543288  decreased coverage  0.00930647  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1143  CDS  NC_009921  1362453  1362764  312  acylphosphatase  YP_001505503  normal  0.563511  decreased coverage  0.00936648  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1144  CDS  NC_009921  1363283  1363480  198  hypothetical protein  YP_001505504  normal  0.717129  decreased coverage  0.00895911  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1145  CDS  NC_009921  1364024  1367815  3792  chromosome segregation protein SMC  YP_001505505  normal  decreased coverage  0.00888217  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1176  CDS  NC_009921  1400042  1401055  1014  HAD family hydrolase  YP_001505536  decreased coverage  0.00246579  normal  0.129694  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1177  CDS  NC_009921  1401154  1401612  459  hypothetical protein  YP_001505537  decreased coverage  0.000391761  normal  0.210733  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1204  CDS  NC_009921  1439371  1440387  1017  hypothetical protein  YP_001505564  decreased coverage  0.00102705  normal  0.560918  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1205  CDS  NC_009921  1440503  1442290  1788  RNA modification protein  YP_001505565  decreased coverage  0.00267373  normal  0.652733  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1244  CDS  NC_009921  1497845  1498438  594  hypothetical protein  YP_001505604  normal  0.214862  decreased coverage  0.000603891  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1251  CDS  NC_009921  1506549  1508816  2268  putative DNA-binding protein  YP_001505611  decreased coverage  0.00288406  normal  0.0497189  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1254  CDS  NC_009921  1511348  1512007  660  molybdopterin-guanine dinucleotide biosynthesis protein  YP_001505614  decreased coverage  0.000236078  normal  0.031709  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1255  CDS  NC_009921  1512007  1512366  360  hypothetical protein  YP_001505615  decreased coverage  0.000262433  normal  0.0300767  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1256  CDS  NC_009921  1512377  1512811  435  hypothetical protein  YP_001505616  decreased coverage  0.000437714  normal  0.0306001  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1507  CDS  NC_009921  1809518  1810891  1374  major facilitator transporter  YP_001505853  normal  decreased coverage  1.69816e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1508  CDS  NC_009921  1810954  1811376  423  DNA binding domain-containing protein  YP_001505854  normal  decreased coverage  1.23588e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1509  CDS  NC_009921  1811373  1812245  873  alpha/beta hydrolase fold  YP_001505855  normal  decreased coverage  1.27113e-05  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1510  CDS  NC_009921  1813046  1813456  411  hypothetical protein  YP_001505856  normal  decreased coverage  9.60281e-06  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1552  CDS  NC_009921  1857201  1858388  1188  ATPase  YP_001505897  decreased coverage  0.00806987  normal  0.569972  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1581  CDS  NC_009921  1889020  1889853  834  hypothetical protein  YP_001505926  normal  0.76321  decreased coverage  0.00696223  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1582  CDS  NC_009921  1889912  1890811  900  pentapeptide repeat-containing protein  YP_001505927  normal  decreased coverage  0.00696223  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1611  CDS  NC_009921  1928250  1929587  1338  hypothetical protein  YP_001505956  decreased coverage  0.00173364  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1613  CDS  NC_009921  1930459  1931913  1455  integral membrane sensor signal transduction histidine kinase  YP_001505958  decreased coverage  0.00723596  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1686  CDS  NC_009921  2017736  2018581  846  regulatory protein GntR HTH  YP_001506030  decreased coverage  0.00156623  normal  0.250936  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1692  CDS  NC_009921  2024266  2024760  495  hypothetical protein  YP_001506036  decreased coverage  0.00793955  normal  0.268079  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1727  CDS  NC_009921  2064427  2065602  1176  hypothetical protein  YP_001506071  decreased coverage  0.00463945  hitchhiker  0.00188922  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1732  CDS  NC_009921  2068414  2069640  1227  PAS/PAC sensor signal transduction histidine kinase  YP_001506076  normal  0.0544412  decreased coverage  0.000497213  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1733  CDS  NC_009921  2069740  2070843  1104  phenylalanyl-tRNA synthetase, alpha subunit  YP_001506077  normal  0.0555236  decreased coverage  0.00043678  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1734  CDS  NC_009921  2070860  2073457  2598  phenylalanyl-tRNA synthetase subunit beta  YP_001506078  normal  0.236213  decreased coverage  0.000664973  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1735  CDS  NC_009921  2073509  2074891  1383  hypothetical protein  YP_001506079  normal  0.0241629  decreased coverage  0.000466005  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1736  CDS  NC_009921  2074983  2075981  999  hypothetical protein  YP_001506080  normal  0.0750549  decreased coverage  0.000433226  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1751  CDS  NC_009921  2100152  2101141  990  hemolysin A  YP_001506095  decreased coverage  0.00952938  hitchhiker  0.000670381  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1756  CDS  NC_009921  2106771  2107667  897  hypothetical protein  YP_001506100  decreased coverage  0.00985833  hitchhiker  0.000872746  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1757  CDS  NC_009921  2107670  2108158  489  hypothetical protein  YP_001506101  decreased coverage  0.00361219  hitchhiker  0.000780754  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1766  CDS  NC_009921  2118874  2120232  1359  glutamine synthetase catalytic region  YP_001506110  normal  0.725397  decreased coverage  0.000162709  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1777  CDS  NC_009921  2133971  2135833  1863  serine/threonine protein kinase  YP_001506121  decreased coverage  0.00817012  normal  0.221734  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1778  CDS  NC_009921  2135861  2136772  912  hypothetical protein  YP_001506122  decreased coverage  0.00178055  normal  0.185841  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1779  CDS  NC_009921  2137072  2138520  1449  2-oxoglutarate dehydrogenase E2 component  YP_001506123  decreased coverage  0.00910904  normal  0.202606  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1855  CDS  NC_009921  2225925  2228408  2484  hypothetical protein  YP_001506199  normal  0.152269  decreased coverage  0.00336297  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1856  CDS  NC_009921  2228430  2230109  1680  glycosyl transferase family protein  YP_001506200  normal  0.0355886  decreased coverage  0.0028209  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1857  CDS  NC_009921  2230452  2230811  360  hypothetical protein  YP_001506201  normal  0.0534563  decreased coverage  0.00174056  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1858  CDS  NC_009921  2231264  2232871  1608  phosphoesterase PA-phosphatase related  YP_001506202  normal  0.832371  decreased coverage  0.00202108  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1859  CDS  NC_009921  2232918  2233757  840  hypothetical protein  YP_001506203  normal  decreased coverage  0.00154434  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1860  CDS  NC_009921  2234474  2237308  2835  pyruvate dehydrogenase subunit E1  YP_001506204  normal  decreased coverage  0.00231048  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1962  CDS  NC_009921  2358374  2359366  993  helix-turn-helix type 11 domain-containing protein  YP_001506305  decreased coverage  0.000800393  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1963  CDS  NC_009921  2359471  2360640  1170  radical SAM domain-containing protein  YP_001506306  decreased coverage  0.003672  normal  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1991  CDS  NC_009921  2394325  2394966  642  hypothetical protein  YP_001506334  decreased coverage  0.00244164  normal  0.308842  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_1992  CDS  NC_009921  2394912  2396000  1089  short-chain dehydrogenase/reductase SDR  YP_001506335  decreased coverage  0.00359465  normal  0.191358  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2225  CDS  NC_009921  2661432  2662646  1215  sodium/hydrogen exchanger  YP_001506566  normal  decreased coverage  0.00686408  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2226  CDS  NC_009921  2662749  2663522  774  enoyl-(acyl carrier protein) reductase  YP_001506567  normal  0.313635  decreased coverage  0.00565512  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2227  CDS  NC_009921  2663756  2664487  732  hypothetical protein  YP_001506568  normal  0.0361833  decreased coverage  0.006058  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2230  CDS  NC_009921  2668160  2668876  717  short-chain dehydrogenase/reductase SDR  YP_001506571  normal  0.024265  decreased coverage  0.0061856  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2231  CDS  NC_009921  2669151  2669450  300  hypothetical protein  YP_001506572  hitchhiker  0.00761323  decreased coverage  0.00550002  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2232  CDS  NC_009921  2669519  2670784  1266  ferrochelatase  YP_001506573  normal  0.0180991  decreased coverage  0.00658585  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2234  CDS  NC_009921  2671703  2672227  525  PadR-like family transcriptional regulator  YP_001506575  normal  0.156481  decreased coverage  0.00573263  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2235  CDS  NC_009921  2672224  2672616  393  peptide ABC transporter ATPase  YP_001506576  normal  0.61872  decreased coverage  0.00557784  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2236  CDS  NC_009921  2672904  2673683  780  hypothetical protein  YP_001506577  normal  decreased coverage  0.006058  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2239  CDS  NC_009921  2675780  2677156  1377  glycosyl transferase group 1  YP_001506580  normal  0.324068  decreased coverage  0.00686408  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2240  CDS  NC_009921  2677353  2677856  504  hypothetical protein  YP_001506581  normal  0.0381986  decreased coverage  0.0061856  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2241  CDS  NC_009921  2677867  2679048  1182  L-carnitine dehydratase/bile acid-inducible protein F  YP_001506582  normal  0.0989684  decreased coverage  0.00710998  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2242  CDS  NC_009921  2679088  2680035  948  hypothetical protein  YP_001506583  normal  0.12731  decreased coverage  0.00672311  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2243  CDS  NC_009921  2680057  2680962  906  urate oxidase  YP_001506584  normal  0.0348041  decreased coverage  0.00681742  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2244  CDS  NC_009921  2681725  2683155  1431  ErfK/YbiS/YcfS/YnhG family protein  YP_001506585  normal  0.111887  decreased coverage  0.00847254  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2246  CDS  NC_009921  2684842  2686065  1224  OmpA/MotB domain-containing protein  YP_001506587  normal  0.14079  decreased coverage  0.00792288  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
Franean1_2247  CDS  NC_009921  2686313  2686714  402  hypothetical protein  YP_001506588  normal  0.0172498  decreased coverage  0.00677011  Frankia sp. EAN1pec  Bacteria 
 
 
-
 
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