79 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Paes_0008  CDS  NC_011059  10694  11131  438  thiosulfate-binding protein SoxY  YP_002014721  decreased coverage  4.79994e-08  hitchhiker  0.00586011  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0009  CDS  NC_011059  11156  11464  309  Sulphur oxidation protein SoxZ  YP_002014722  decreased coverage  3.24159e-08  hitchhiker  0.00558497  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0019  CDS  NC_011059  20912  22567  1656  ribonuclease, Rne/Rng family  YP_002014732  decreased coverage  2.01428e-07  unclonable  1.66802e-06  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0111  CDS  NC_011059  112444  114354  1911  potassium efflux system protein  YP_002014818  decreased coverage  0.000503548  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0148  CDS  NC_011059  158358  160556  2199  catalase/peroxidase HPI  YP_002014854  decreased coverage  0.0029119  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0160  CDS  NC_011059  169255  169491  237  30S ribosomal protein S18  YP_002014866  decreased coverage  3.43097e-09  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0204  CDS  NC_011059  212411  213493  1083  TIR protein  YP_002014909  decreased coverage  0.00447425  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0273  CDS  NC_011059  285752  286546  795  diaminopimelate epimerase  YP_002014977  hitchhiker  6.51876e-06  decreased coverage  2.61892e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0275  CDS  NC_011059  289213  289884  672  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002014979  normal  0.106395  decreased coverage  2.59361e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0276  CDS  NC_011059  289999  290736  738  Dolichyl-phosphate beta-D-mannosyltransferase  YP_002014980  normal  0.50271  decreased coverage  2.66916e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0277  CDS  NC_011059  290808  292880  2073  elongation factor G  YP_002014981  normal  decreased coverage  4.80322e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0284  CDS  NC_011059  299396  299821  426  50S ribosomal protein L11  YP_002014988  decreased coverage  3.80764e-09  hitchhiker  0.00371909  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0285  CDS  NC_011059  299896  300585  690  50S ribosomal protein L1  YP_002014989  decreased coverage  1.05773e-08  hitchhiker  0.00394818  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0287  CDS  NC_011059  301199  301579  381  50S ribosomal protein L7/L12  YP_002014991  decreased coverage  2.8458e-09  normal  0.010711  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0439  CDS  NC_011059  472284  473069  786  1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase  YP_002015143  decreased coverage  2.1512e-05  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0471  CDS  NC_011059  504934  506007  1074  permease  YP_002015174  decreased coverage  6.32482e-09  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0583  CDS  NC_011059  623564  624829  1266  3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_002015286  decreased coverage  4.3565e-08  normal  0.444529  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0606  CDS  NC_011059  646276  647322  1047  glutathione synthetase  YP_002015309  decreased coverage  0.000326698  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0646  CDS  NC_011059  684979  685464  486  transposase IS3/IS911 family protein  YP_002015344  decreased coverage  0.000318322  normal  0.432227  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0672  CDS  NC_011059  713341  714585  1245  hypothetical protein  YP_002015366  normal  decreased coverage  0.000206571  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0716  CDS  NC_011059  761592  765062  3471  ribonucleotide-diphosphate reductase subunit alpha  YP_002015410  decreased coverage  0.00503093  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0816  CDS  NC_011059  897719  898021  303  hypothetical protein  YP_002015509  decreased coverage  3.18507e-09  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0817  CDS  NC_011059  898031  898294  264  hypothetical protein  YP_002015510  decreased coverage  2.8458e-09  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0824  CDS  NC_011059  906862  908196  1335  permease YjgP/YjgQ family protein  YP_002015517  decreased coverage  0.00713526  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0879    NC_011059  960545  961135  591      hitchhiker  1.17242e-08  decreased coverage  0.00867661  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0880  CDS  NC_011059  961158  961943  786  dimethyladenosine transferase  YP_002015571  decreased coverage  3.57619e-09  decreased coverage  0.00867661  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0881  CDS  NC_011059  962014  962997  984  Transketolase central region  YP_002015572  decreased coverage  8.76605e-09  normal  0.0478781  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0882  CDS  NC_011059  963021  963377  357  hypothetical protein  YP_002015573  decreased coverage  5.77167e-10  normal  0.0425373  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_0975  CDS  NC_011059  1072716  1074098  1383  hypothetical protein  YP_002015663  decreased coverage  5.07392e-07  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1078  CDS  NC_011059  1187260  1188558  1299  diguanylate cyclase  YP_002015760  decreased coverage  0.00831826  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1079  CDS  NC_011059  1188555  1189814  1260  protein of unknown function DUF214  YP_002015761  decreased coverage  1.07767e-05  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1080  CDS  NC_011059  1189811  1191124  1314  protein of unknown function DUF214  YP_002015762  decreased coverage  0.00196506  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1100  CDS  NC_011059  1208193  1208972  780  conserved hypothetical transposase  YP_002015780  decreased coverage  0.00213813  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1173  CDS  NC_011059  1281816  1282538  723  protein of unknown function UPF0005  YP_002015849  decreased coverage  0.00047203  normal  0.359337  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1187  CDS  NC_011059  1296031  1296786  756  PASTA domain containing protein  YP_002015863  decreased coverage  2.64979e-07  normal  0.522072  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1216  CDS  NC_011059  1325858  1326448  591  protein of unknown function DUF218  YP_002015891  hitchhiker  0.000413314  decreased coverage  0.000114911  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1217  CDS  NC_011059  1326666  1327697  1032  NmrA family protein  YP_002015892  hitchhiker  1.04302e-07  decreased coverage  0.000138071  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1218  CDS  NC_011059  1327912  1328625  714  hypothetical protein  YP_002015893  decreased coverage  1.85377e-09  decreased coverage  0.000126486  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1255  CDS  NC_011059  1357995  1358522  528  Adenosylcobinamide kinase  YP_002015928  decreased coverage  0.00329732  normal  0.584656  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1256  CDS  NC_011059  1358761  1359348  588  hypothetical protein  YP_002015929  decreased coverage  0.00157199  normal  0.560162  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1356  CDS  NC_011059  1476715  1478643  1929  alpha amylase catalytic region  YP_002016025  decreased coverage  1.07731e-06  normal  0.0276756  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1364  CDS  NC_011059  1485871  1487133  1263  hypothetical protein  YP_002016032  decreased coverage  4.3565e-08  normal  0.463886  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1396  CDS  NC_011059  1516128  1516403  276  hypothetical protein  YP_002016064  decreased coverage  4.63627e-07  normal  0.996169  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1412  CDS  NC_011059  1538340  1538645  306  CRISPR-associated protein Cas2  YP_002016080  decreased coverage  0.00285914  normal  0.0632504  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1437  CDS  NC_011059  1567016  1568875  1860  magnesium chelatase ATPase subunit D  YP_002016104  decreased coverage  2.86805e-07  normal  0.499539  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1469  CDS  NC_011059  1606991  1608817  1827  aspartyl-tRNA synthetase  YP_002016136  decreased coverage  2.1993e-05  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1488  CDS  NC_011059  1626965  1627963  999  hypothetical protein  YP_002016155  decreased coverage  0.00364403  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1500  CDS  NC_011059  1641836  1642015  180  50S ribosomal protein L33  YP_002016167  decreased coverage  1.33307e-10  normal  0.765862  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1538  CDS  NC_011059  1679797  1681077  1281  glutamyl-tRNA reductase  YP_002016205  decreased coverage  5.72654e-05  hitchhiker  0.00320604  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1553  CDS  NC_011059  1692781  1693149  369  Dinitrogenase iron-molybdenum cofactor biosynthesis protein  YP_002016219  unclonable  6.98293e-12  decreased coverage  1.95705e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1554    NC_011059  1693146  1693568  423      unclonable  8.53943e-12  decreased coverage  2.0897e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1555  CDS  NC_011059  1693705  1694622  918  protein of unknown function DUF89  YP_002016220  hitchhiker  5.02074e-09  decreased coverage  2.47476e-05  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1631  CDS  NC_011059  1774298  1775680  1383  nitrogenase molybdenum-iron protein beta chain  YP_002016296  decreased coverage  8.77058e-05  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1738  CDS  NC_011059  1899035  1899427  393  PilT protein domain protein  YP_002016403  decreased coverage  2.40428e-05  normal  0.135442  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1752  CDS  NC_011059  1912626  1913534  909  sulfate adenylyltransferase subunit 2  YP_002016416  normal  decreased coverage  0.00756127  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1753  CDS  NC_011059  1913697  1914776  1080  glycosyl transferase group 1  YP_002016417  normal  0.908553  decreased coverage  0.00756127  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1776  CDS  NC_011059  1936407  1936763  357  S23 ribosomal protein  YP_002016436  decreased coverage  3.53039e-09  normal  0.0187612  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1777  CDS  NC_011059  1936923  1937495  573  hypothetical protein  YP_002016437  hitchhiker  8.57192e-08  decreased coverage  0.00810596  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1778  CDS  NC_011059  1938218  1941712  3495  alpha amylase catalytic region  YP_002016438  normal  0.288159  decreased coverage  0.00472936  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1779  CDS  NC_011059  1941923  1943191  1269  Cytochrome b/b6 domain  YP_002016439  normal  0.484297  decreased coverage  0.00239788  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1780  CDS  NC_011059  1943231  1943776  546  Plastoquinol--plastocyanin reductase  YP_002016440  normal  decreased coverage  0.00627342  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1816  CDS  NC_011059  1981316  1983685  2370  cell divisionFtsK/SpoIIIE  YP_002016475  decreased coverage  6.45592e-06  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1896  CDS  NC_011059  2074359  2075087  729  hypothetical protein  YP_002016555  decreased coverage  0.00275112  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1960  CDS  NC_011059  2142880  2143125  246  bacteriochlorophyll C binding protein  YP_002016619  decreased coverage  2.1808e-10  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1970  CDS  NC_011059  2157076  2158194  1119  rod shape-determining protein MreB  YP_002016629  decreased coverage  1.14357e-07  normal  0.892505  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1980  CDS  NC_011059  2172684  2174066  1383  Peptidase M23  YP_002016639  decreased coverage  0.00339871  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_1981  CDS  NC_011059  2174119  2174529  411  Class I peptide chain release factor  YP_002016640  decreased coverage  2.74722e-05  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2008  CDS  NC_011059  2205183  2206526  1344  protein of unknown function DUF21  YP_002016665  decreased coverage  4.03932e-06  normal  0.229254  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2017  CDS  NC_011059  2213229  2215871  2643  hypothetical protein  YP_002016674  decreased coverage  0.000248245  normal  0.284056  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2038  CDS  NC_011059  2235009  2235620  612  30S ribosomal protein S4  YP_002016695  decreased coverage  1.6478e-07  normal  0.289482  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2039  CDS  NC_011059  2235663  2236046  384  30S ribosomal protein S11  YP_002016696  decreased coverage  5.28036e-09  normal  0.276902  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2067  CDS  NC_011059  2250318  2252432  2115  elongation factor G  YP_002016724  decreased coverage  3.38261e-05  normal  0.439953  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2137  CDS  NC_011059  2312206  2313360  1155  Na(+)-translocating NADH-quinone reductase subunit B  YP_002016788  decreased coverage  7.164e-07  normal  0.988223  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2232  CDS  NC_011059  2411899  2413302  1404  hypothetical protein  YP_002016881  decreased coverage  0.000103157  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2233  CDS  NC_011059  2413592  2414788  1197  protein of unknown function DUF323  YP_002016882  decreased coverage  0.00201731  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2259  CDS  NC_011059  2436372  2437667  1296  cell division protein FtsA  YP_002016907  decreased coverage  3.36547e-08  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2286  CDS  NC_011059  2465753  2465971  219  hypothetical protein  YP_002016934  decreased coverage  1.26987e-10  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_2287  CDS  NC_011059  2466257  2467249  993  aldo/keto reductase  YP_002016935  decreased coverage  4.38369e-09  normal  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
-
 
Paes_R0044  tRNA  NC_011059  1642081  1642165  85  tRNA-Leu    decreased coverage  7.17769e-11  normal  0.735401  Prosthecochloris aestuarii DSM 271  Bacteria 
 
 
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