63 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Cpha266_0230  CDS  NC_008639  254677  255366  690  50S ribosomal protein L1  YP_910721  decreased coverage  0.000338743  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0366  CDS  NC_008639  409463  409666  204  hypothetical protein  YP_910849  decreased coverage  2.36247e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0368  CDS  NC_008639  410366  411922  1557  transcription elongation factor NusA  YP_910851  decreased coverage  0.00190694  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0372  CDS  NC_008639  416110  417075  966  riboflavin kinase / FMN adenylyltransferase  YP_910855  decreased coverage  2.76676e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0396  CDS  NC_008639  438858  439589  732  hypothetical protein  YP_910879  decreased coverage  2.19065e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0428  CDS  NC_008639  473682  474812  1131  hydroxyneurosporene synthase  YP_910910  decreased coverage  0.000692548  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0464  CDS  NC_008639  512914  513966  1053  permease  YP_910946  decreased coverage  9.58774e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0541  CDS  NC_008639  595389  596792  1404  bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase  YP_911022  decreased coverage  0.00572475  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0620  CDS  NC_008639  695421  696728  1308  outer membrane efflux protein  YP_911099  decreased coverage  1.93694e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0621  CDS  NC_008639  696754  697689  936  RND family efflux transporter MFP subunit  YP_911100  decreased coverage  3.87759e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0683  CDS  NC_008639  780644  781123  480  hypothetical protein  YP_911162  decreased coverage  0.00218027  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0967  CDS  NC_008639  1107409  1107927  519  NADH-ubiquinone/plastoquinone oxidoreductase, chain 6  YP_911439  decreased coverage  1.00326e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0968  CDS  NC_008639  1108017  1108334  318  NADH-ubiquinone oxidoreductase, chain 4L  YP_911440  decreased coverage  5.76446e-08  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0969  CDS  NC_008639  1108387  1110666  2280  proton-translocating NADH-quinone oxidoreductase, chain L  YP_911441  decreased coverage  0.00014024  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0973  CDS  NC_008639  1115404  1117122  1719  nickel-dependent hydrogenase, large subunit  YP_911445  decreased coverage  0.000120136  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_0974  CDS  NC_008639  1117135  1117818  684  Ni/Fe-hydrogenase, b-type cytochrome subunit  YP_911446  decreased coverage  5.84739e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1047  CDS  NC_008639  1185859  1187145  1287  hypothetical protein  YP_911518  decreased coverage  0.00366943  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1160  CDS  NC_008639  1307084  1308421  1338  nodulation efficiency protein NfeD  YP_911621  decreased coverage  0.00735841  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1172  CDS  NC_008639  1321501  1322118  618  recombination protein RecR  YP_911633  decreased coverage  6.93632e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1274  CDS  NC_008639  1452628  1454106  1479  hypothetical protein  YP_911731  decreased coverage  3.54045e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1412  CDS  NC_008639  1607871  1608953  1083  histidinol phosphate aminotransferase  YP_911865  decreased coverage  1.03384e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1490  CDS  NC_008639  1688873  1691101  2229  hypothetical protein  YP_911938  decreased coverage  0.00271295  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1524  CDS  NC_008639  1732129  1732536  408  30S ribosomal protein S16  YP_911970  decreased coverage  5.01914e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1550  CDS  NC_008639  1761878  1762351  474  hypothetical protein  YP_911996  decreased coverage  5.69387e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1578  CDS  NC_008639  1794072  1795022  951  hypothetical protein  YP_912024  decreased coverage  7.06252e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1579  CDS  NC_008639  1795400  1795843  444  hypothetical protein  YP_912025  decreased coverage  5.78339e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1580  CDS  NC_008639  1796058  1796933  876  heat shock protein HtpX  YP_912026  decreased coverage  2.35294e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1590  CDS  NC_008639  1804768  1805064  297  hypothetical protein  YP_912035  decreased coverage  0.000974266  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1591  CDS  NC_008639  1805087  1805482  396  biotin/lipoyl attachment domain-containing protein  YP_912036  decreased coverage  0.000447917  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1682  CDS  NC_008639  1909724  1910956  1233  extracellular ligand-binding receptor  YP_912127  decreased coverage  1.83641e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1730  CDS  NC_008639  1957617  1958189  573  hypothetical protein  YP_912171  decreased coverage  2.4341e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
-
 
Cpha266_1731  CDS  NC_008639  1958239  1958496  258  hypothetical protein  YP_912172  decreased coverage  5.84585e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1845  CDS  NC_008639  2124518  2125933  1416  TolC family type I secretion outer membrane protein  YP_912285  decreased coverage  3.90204e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1872  CDS  NC_008639  2169433  2170620  1188  chaperone protein DnaJ  YP_912312  decreased coverage  3.40868e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1908  CDS  NC_008639  2215585  2216322  738  Type II site-specific deoxyribonuclease  YP_912348  decreased coverage  0.000191766  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1927  CDS  NC_008639  2235794  2236252  459  hypothetical protein  YP_912367  decreased coverage  0.000111149  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1928  CDS  NC_008639  2236265  2237101  837  protein of unknown function DUF306, Meta and HslJ  YP_912368  decreased coverage  4.53787e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1936  CDS  NC_008639  2243329  2244972  1644  chaperonin GroEL  YP_912376  decreased coverage  0.000102441  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_1999  CDS  NC_008639  2313882  2314391  510  hypothetical protein  YP_912436  decreased coverage  1.26346e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2000  CDS  NC_008639  2314410  2315234  825  short-chain dehydrogenase/reductase SDR  YP_912437  decreased coverage  5.78748e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2015  CDS  NC_008639  2327942  2328202  261  NifU domain-containing protein  YP_912451  decreased coverage  2.13209e-08  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2016  CDS  NC_008639  2328217  2330649  2433  cell divisionFtsK/SpoIIIE  YP_912452  decreased coverage  0.000167255  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2040  CDS  NC_008639  2359527  2360096  570  protein tyrosine phosphatase  YP_912476  decreased coverage  1.70102e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2072  CDS  NC_008639  2406540  2408663  2124  ATP-dependent DNA helicase RecG  YP_912508  decreased coverage  0.000101062  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2133    NC_008639  2465469  2465927  459      decreased coverage  0.00859021  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2134  CDS  NC_008639  2466177  2467223  1047  transposase and inactivated derivatives  YP_912563  decreased coverage  0.0068506  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2219  CDS  NC_008639  2546158  2546934  777  hypothetical protein  YP_912641  decreased coverage  1.2179e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2220  CDS  NC_008639  2547092  2547658  567  hypothetical protein  YP_912642  decreased coverage  3.76719e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2369  CDS  NC_008639  2753857  2754930  1074  hypothetical protein  YP_912781  decreased coverage  0.00120754  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2370  CDS  NC_008639  2754967  2755713  747  16S ribosomal RNA methyltransferase RsmE  YP_912782  decreased coverage  0.00405719  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2400  CDS  NC_008639  2786447  2786563  117  50S ribosomal protein L36  YP_912812  decreased coverage  3.87542e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2401  CDS  NC_008639  2786674  2786892  219  translation initiation factor IF-1  YP_912813  decreased coverage  5.18496e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2417  CDS  NC_008639  2794594  2795346  753  30S ribosomal protein S3  YP_912829  decreased coverage  3.14718e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2476  CDS  NC_008639  2848359  2849300  942  periplasmic solute binding protein  YP_912888  decreased coverage  0.00202006  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2530  CDS  NC_008639  2900390  2900698  309  hypothetical protein  YP_912942  decreased coverage  3.89851e-08  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2531  CDS  NC_008639  2901190  2902791  1602  hypothetical protein  YP_912943  decreased coverage  8.54266e-06  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2569  CDS  NC_008639  2944271  2945704  1434  sulfide-quinone reductase  YP_912981  decreased coverage  0.000267318  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2601  CDS  NC_008639  2982658  2982858  201  hypothetical protein  YP_913013  decreased coverage  0.00023523  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2602  CDS  NC_008639  2982855  2983097  243  hypothetical protein  YP_913014  decreased coverage  7.56019e-05  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2603  CDS  NC_008639  2983953  2985362  1410  putative transcriptional regulator  YP_913015  decreased coverage  0.00960244  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2607  CDS  NC_008639  2993067  2993639  573  putative acetyltransferase  YP_913019  decreased coverage  7.73835e-07  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2664  CDS  NC_008639  3058640  3059035  396  iojap-like protein  YP_913072  decreased coverage  0.000901507  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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Cpha266_2705  CDS  NC_008639  3097594  3097827  234  hypothetical protein  YP_913113  decreased coverage  3.28169e-08  n/a    Chlorobium phaeobacteroides DSM 266  Bacteria 
 
 
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