59 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Clim_0013  CDS  NC_010803  15393  16328  936  preprotein translocase subunit SecF  YP_001942100  decreased coverage  1.158e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0103  CDS  NC_010803  108050  110536  2487  DNA gyrase, A subunit  YP_001942188  decreased coverage  9.29696e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0149  CDS  NC_010803  168178  168441  264  30S ribosomal protein S18  YP_001942227  decreased coverage  9.4282e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0182  CDS  NC_010803  199470  201665  2196  photosystem P840 reaction center, large subunit  YP_001942260  decreased coverage  1.0763e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0190  CDS  NC_010803  210932  211123  192  preprotein translocase subunit SecE  YP_001942268  decreased coverage  1.26022e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0191  CDS  NC_010803  211146  211721  576  NusG antitermination factor  YP_001942269  decreased coverage  3.82089e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0242  CDS  NC_010803  271283  273475  2193  penicillin-binding protein, 1A family  YP_001942316  decreased coverage  1.13999e-06  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0250  CDS  NC_010803  281526  282173  648  surface antigen msp4 family protein  YP_001942324  decreased coverage  2.37774e-06  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0261  CDS  NC_010803  293640  294293  654  protein-L-isoaspartate O-methyltransferase  YP_001942335  decreased coverage  6.51087e-06  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0303  CDS  NC_010803  340039  341004  966  riboflavin biosynthesis protein RibF  YP_001942376  decreased coverage  7.35935e-09  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0422  CDS  NC_010803  468233  468682  450  50S ribosomal protein L13  YP_001942494  decreased coverage  0.00538272  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0497  CDS  NC_010803  564194  564481  288  co-chaperonin GroES  YP_001942569  decreased coverage  7.41059e-13  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0533  CDS  NC_010803  601431  602291  861  rod shape-determining protein MreC  YP_001942604  decreased coverage  0.00550121  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0540  CDS  NC_010803  610317  611042  726  ABC transporter related  YP_001942611  decreased coverage  0.00247085  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0570  CDS  NC_010803  642035  642247  213  hypothetical protein  YP_001942640  decreased coverage  0.00871665  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0645  CDS  NC_010803  721160  721924  765  Type II site-specific deoxyribonuclease  YP_001942711  decreased coverage  6.18072e-09  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0908  CDS  NC_010803  993309  993833  525  hypothetical protein  YP_001942966  decreased coverage  5.42792e-13  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0909  CDS  NC_010803  993954  994103  150  hypothetical protein  YP_001942967  decreased coverage  1.33445e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0971  CDS  NC_010803  1063752  1064417  666  hypothetical protein  YP_001943026  decreased coverage  9.97289e-11  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1004  CDS  NC_010803  1095644  1096738  1095  transport system permease protein  YP_001943059  decreased coverage  0.00447808  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1064  CDS  NC_010803  1166075  1168060  1986  TonB-dependent receptor  YP_001943112  decreased coverage  0.00188221  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1095  CDS  NC_010803  1198273  1198788  516  hypothetical protein  YP_001943143  decreased coverage  1.52193e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1259  CDS  NC_010803  1359776  1361917  2142  polyphosphate kinase  YP_001943305  decreased coverage  0.00202694  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1409  CDS  NC_010803  1514571  1515425  855  hypothetical protein  YP_001943448  decreased coverage  2.07468e-09  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1410  CDS  NC_010803  1515407  1516111  705  hypothetical protein  YP_001943449  decreased coverage  4.14925e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1554  CDS  NC_010803  1674676  1674858  183  50S ribosomal protein L33  YP_001943582  decreased coverage  4.11088e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1572  CDS  NC_010803  1691791  1693122  1332  hypothetical protein  YP_001943598  decreased coverage  1.83741e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1573  CDS  NC_010803  1693109  1693783  675  hypothetical protein  YP_001943599  decreased coverage  5.36075e-11  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1591  CDS  NC_010803  1712380  1713519  1140  queuine tRNA-ribosyltransferase  YP_001943615  decreased coverage  0.00100827  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1611  CDS  NC_010803  1742784  1744091  1308  hypothetical protein  YP_001943634  decreased coverage  1.79592e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1660  CDS  NC_010803  1797502  1798215  714  hypothetical protein  YP_001943682  decreased coverage  2.95507e-06  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1674  CDS  NC_010803  1840421  1841911  1491  anthranilate synthase component I  YP_001943695  decreased coverage  0.00452514  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1685  CDS  NC_010803  1853000  1853713  714  ABC transporter related  YP_001943706  decreased coverage  3.84234e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_1686  CDS  NC_010803  1853679  1855043  1365  major facilitator superfamily MFS_1  YP_001943707  decreased coverage  0.000674894  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_1771  CDS  NC_010803  1946440  1947933  1494  amidophosphoribosyltransferase  YP_001943789  decreased coverage  6.57758e-05  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1780  CDS  NC_010803  1957520  1958098  579  dTDP-4-dehydrorhamnose 3,5-epimerase  YP_001943798  decreased coverage  1.89837e-05  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_1787  CDS  NC_010803  1965038  1965388  351  hydrogenase nickel insertion protein HypA  YP_001943805  decreased coverage  6.97266e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_1788  CDS  NC_010803  1965516  1966442  927  aspartate carbamoyltransferase catalytic subunit  YP_001943806  decreased coverage  2.40723e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1789  CDS  NC_010803  1966453  1967370  918  hypothetical protein  YP_001943807  decreased coverage  2.45349e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1790  CDS  NC_010803  1967444  1967950  507  NUDIX hydrolase  YP_001943808  decreased coverage  1.45412e-11  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1791  CDS  NC_010803  1968133  1969383  1251  coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein  YP_001943809  decreased coverage  8.03312e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1858  CDS  NC_010803  2041759  2042394  636  hypothetical protein  YP_001943876  decreased coverage  2.75455e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1983  CDS  NC_010803  2200832  2201284  453  cytochrome c, putative  YP_001943994  decreased coverage  0.000836955  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2072  CDS  NC_010803  2284267  2284998  732  protein of unknown function DUF541  YP_001944080  decreased coverage  2.6389e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2073  CDS  NC_010803  2285022  2285678  657  hypothetical protein  YP_001944081  decreased coverage  6.12499e-10  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2079  CDS  NC_010803  2293451  2294704  1254  domain of unknown function DUF1745  YP_001944087  decreased coverage  0.00286991  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2186  CDS  NC_010803  2424323  2426971  2649  hypothetical protein  YP_001944189  decreased coverage  1.83684e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2205  CDS  NC_010803  2444547  2444924  378  30S ribosomal protein S13  YP_001944208  decreased coverage  3.97378e-13  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_2206  CDS  NC_010803  2444960  2445076  117  50S ribosomal protein L36  YP_001944209  decreased coverage  1.24875e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_2207  CDS  NC_010803  2445190  2445408  219  translation initiation factor IF-1  YP_001944210  decreased coverage  2.68658e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_2208  CDS  NC_010803  2445448  2446245  798  methionine aminopeptidase, type I  YP_001944211  decreased coverage  8.57488e-11  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2225  CDS  NC_010803  2454278  2454574  297  30S ribosomal protein S19  YP_001944228  decreased coverage  4.82989e-13  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2226  CDS  NC_010803  2454608  2455402  795  50S ribosomal protein L2  YP_001944229  decreased coverage  5.49007e-12  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2401  CDS  NC_010803  2632879  2633445  567  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_001944401  decreased coverage  0.000101502  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2505  CDS  NC_010803  2744302  2745408  1107  phospho-N-acetylmuramoyl-pentapeptide- transferase  YP_001944502  decreased coverage  1.06205e-07  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0014  tRNA  NC_010803  210522  210594  73  tRNA-Thr    decreased coverage  7.57854e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0015  tRNA  NC_010803  210606  210688  83  tRNA-Tyr    decreased coverage  8.39238e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0016  tRNA  NC_010803  210715  210787  73  tRNA-Thr    decreased coverage  8.25993e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0017  tRNA  NC_010803  210812  210884  73  tRNA-Trp    decreased coverage  7.51689e-08  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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