85 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
LACR_0006  CDS  NC_008527  10059  10616  558  XRE family transcriptional regulator  YP_808065  decreased coverage  0.000100303  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0044  CDS  NC_008527  40064  40585  522  acetyltransferase  YP_808095  decreased coverage  6.37954e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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LACR_0106  CDS  NC_008527  99909  100208  300  hypothetical protein  YP_808153  decreased coverage  3.96759e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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LACR_0107  CDS  NC_008527  100313  100600  288  serine hydroxymethyltransferase/phosphoribosyl-dephospho-CoA transferase family protein  YP_808154  decreased coverage  3.4416e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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LACR_0180  CDS  NC_008527  165320  166411  1092  hypothetical protein  YP_808220  decreased coverage  0.00971266  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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LACR_0292  CDS  NC_008527  270708  272012  1305  hypothetical protein  YP_808324  decreased coverage  0.00413621  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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LACR_0298  CDS  NC_008527  275888  276010  123  hypothetical protein  YP_808328  decreased coverage  0.000155833  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0354  CDS  NC_008527  322765  323718  954  molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein  YP_808383  decreased coverage  0.000665285  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0430  CDS  NC_008527  402945  403415  471  hypothetical protein  YP_808456  decreased coverage  0.000168681  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0525  CDS  NC_008527  494919  495194  276  nucleoid protein Hbs  YP_808544  decreased coverage  0.00046461  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0579  CDS  NC_008527  535663  536133  471  BadM/Rrf2 family transcriptional regulator  YP_808573  decreased coverage  0.000125855  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0585    NC_008527  541948  543011  1064      decreased coverage  0.000835506  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0612  CDS  NC_008527  561977  562093  117  hypothetical protein  YP_808602  decreased coverage  0.0030596  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0613  CDS  NC_008527  562086  562841  756  NADPH-flavin oxidoreductase  YP_808603  decreased coverage  0.00207228  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0628  CDS  NC_008527  573531  573974  444  flavodoxin  YP_808618  decreased coverage  0.0056688  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0667  CDS  NC_008527  609702  610259  558  sigma 54 modulation protein / SSU ribosomal protein S30P  YP_808654  decreased coverage  0.000156543  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0677  CDS  NC_008527  617711  618979  1269  hypothetical protein  YP_808664  decreased coverage  0.00319053  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0700  CDS  NC_008527  646746  647345  600  ATP-dependent Clp protease proteolytic subunit  YP_808685  decreased coverage  0.000807571  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0720  CDS  NC_008527  664919  665476  558  elongation factor P  YP_808704  decreased coverage  0.000911584  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0787  CDS  NC_008527  732633  733337  705  HAD family sugar phosphatase  YP_808766  decreased coverage  0.00527191  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0791  CDS  NC_008527  737440  737697  258  hypothetical protein  YP_808770  decreased coverage  0.00610853  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0792  CDS  NC_008527  737766  738539  774  choline kinase  YP_808771  decreased coverage  0.000389702  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0827  CDS  NC_008527  769506  769940  435  (3R)-hydroxymyristoyl-ACP dehydratase  YP_808802  decreased coverage  7.35665e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0833  CDS  NC_008527  775907  776146  240  hypothetical protein  YP_808808  decreased coverage  1.81755e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0839  CDS  NC_008527  779479  780225  747  sugar metabolism transcriptional regulator  YP_808813  decreased coverage  0.000299847  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0895  CDS  NC_008527  837049  838203  1155  tRNA-specific 2-thiouridylase MnmA  YP_808866  decreased coverage  0.00179981  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0932  CDS  NC_008527  877637  878203  567  hypothetical protein  YP_808902  decreased coverage  0.000598079  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0960  CDS  NC_008527  902856  903188  333  hypothetical protein  YP_808929  decreased coverage  4.88551e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0961  CDS  NC_008527  904399  905079  681  transposase  YP_808930  decreased coverage  0.000241394  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_0962  CDS  NC_008527  905456  905716  261  transposase  YP_808931  decreased coverage  4.93286e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1045  CDS  NC_008527  985949  986638  690  Crp-like transcriptional regulator  YP_809004  decreased coverage  0.000241394  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1063  CDS  NC_008527  1005788  1006006  219  ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit  YP_809022  decreased coverage  2.90515e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1064  CDS  NC_008527  1006180  1006821  642  putative glycerol-3-phosphate acyltransferase PlsY  YP_809023  decreased coverage  0.000173529  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1090  CDS  NC_008527  1030439  1031125  687  DNA-binding response regulator  YP_809047  decreased coverage  0.00019826  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1091  CDS  NC_008527  1031146  1031661  516  hypothetical protein  YP_809048  decreased coverage  5.17259e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1092  CDS  NC_008527  1031665  1032990  1326  Signal transduction histidine kinase  YP_809049  decreased coverage  0.0028584  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1154  CDS  NC_008527  1071111  1071410  300  hypothetical protein  YP_809110  decreased coverage  0.000253675  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1161  CDS  NC_008527  1078917  1079834  918  TPR repeat-containing protein  YP_809117  decreased coverage  0.000511237  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1162  CDS  NC_008527  1080025  1080864  840  transposase  YP_809118  decreased coverage  0.000280692  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1194  CDS  NC_008527  1106055  1106822  768  5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase  YP_809148  decreased coverage  0.000521258  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1199  CDS  NC_008527  1111434  1112645  1212  chloride channel protein EriC  YP_809153  decreased coverage  0.00235154  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1227  CDS  NC_008527  1144518  1145408  891  transposase  YP_809179  decreased coverage  0.00543475  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1228  CDS  NC_008527  1145560  1146498  939  phosphotransferase family protein  YP_809180  decreased coverage  0.00571757  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1346  CDS  NC_008527  1253585  1254475  891  transposase  YP_809289  decreased coverage  0.000526235  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1413  CDS  NC_008527  1326392  1327282  891  transcriptional regulator  YP_809350  decreased coverage  0.00403461  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1416  CDS  NC_008527  1329772  1330623  852  ribosomal biogenesis GTPase  YP_809353  decreased coverage  0.00443588  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1436  CDS  NC_008527  1353926  1354618  693  hypothetical protein  YP_809369  decreased coverage  0.000109275  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1437  CDS  NC_008527  1354656  1355546  891  transposase  YP_809370  decreased coverage  0.000448786  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1452  CDS  NC_008527  1373044  1374564  1521  ABC-type uncharacterized transport system, ATPase component  YP_809384  decreased coverage  0.00705254  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1465  CDS  NC_008527  1387282  1388241  960  geranylgeranyl pyrophosphate synthase  YP_809397  decreased coverage  0.00436047  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1471  CDS  NC_008527  1392469  1393833  1365  major facilitator superfamily permease  YP_809403  decreased coverage  0.00462633  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1520  CDS  NC_008527  1441135  1442025  891  transposase  YP_809450  decreased coverage  0.00361102  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1667  CDS  NC_008527  1575376  1576083  708  glucosamine-6-phosphate isomerase  YP_809586  decreased coverage  0.00815686  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1712  CDS  NC_008527  1619355  1619876  522  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_809630  decreased coverage  0.00363084  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1864  CDS  NC_008527  1761935  1762747  813  mannose-specific PTS system component IIC  YP_811464  decreased coverage  0.00046638  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1902  CDS  NC_008527  1798528  1798761  234  30S ribosomal protein S20  YP_811499  decreased coverage  0.000191113  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_1950  CDS  NC_008527  1842671  1843327  657  transcriptional regulator  YP_811546  decreased coverage  0.000196372  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2003    NC_008527  1899522  1900091  570      decreased coverage  0.00771503  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2004  CDS  NC_008527  1900338  1900790  453  acetyltransferase  YP_811598  decreased coverage  0.000354216  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2008  CDS  NC_008527  1902993  1903574  582  hypothetical protein  YP_811602  decreased coverage  0.000663876  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2010  CDS  NC_008527  1906632  1907270  639  hypothetical protein  YP_811604  decreased coverage  0.00540235  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2011  CDS  NC_008527  1907377  1907673  297  endonuclease  YP_811605  decreased coverage  0.000274341  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2135  CDS  NC_008527  2010573  2011355  783  phage-encoded protein  YP_811722  decreased coverage  0.000332219  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2183  CDS  NC_008527  2046962  2047942  981  manganese transporter NRAMP  YP_811756  decreased coverage  0.0049052  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2184  CDS  NC_008527  2048048  2048656  609  oxidoreductase  YP_811757  decreased coverage  0.000911584  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2185  CDS  NC_008527  2048797  2049432  636  uracil phosphoribosyltransferase  YP_811758  decreased coverage  0.0012098  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2212  CDS  NC_008527  2077052  2077603  552  hypothetical protein  YP_811781  decreased coverage  0.00418947  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2284  CDS  NC_008527  2135700  2136125  426  50S ribosomal protein L11  YP_811853  decreased coverage  8.09352e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2291  CDS  NC_008527  2140354  2140911  558  ribosome recycling factor  YP_811860  decreased coverage  0.000106212  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2303  CDS  NC_008527  2150663  2151553  891  transposase  YP_811872  decreased coverage  0.000726032  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2304  CDS  NC_008527  2151614  2152072  459  hypothetical protein  YP_811873  decreased coverage  0.000119958  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2305  CDS  NC_008527  2152117  2152506  390  hypothetical protein  YP_811874  decreased coverage  5.80025e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2310  CDS  NC_008527  2155192  2155578  387  hypothetical protein  YP_811878  decreased coverage  7.79095e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2334  CDS  NC_008527  2180724  2181680  957  hypothetical protein  YP_811899  decreased coverage  0.000883594  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2347  CDS  NC_008527  2194523  2195017  495  amidase  YP_811910  decreased coverage  0.00237714  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2407  CDS  NC_008527  2235600  2235794  195  preprotein translocase subunit SecE  YP_811966  decreased coverage  0.00372571  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2439  CDS  NC_008527  2266690  2267913  1224  trypsin-like serine protease  YP_811995  decreased coverage  0.0015948  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2521    NC_008527  2353451  2354332  882      decreased coverage  0.00399664  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2522  CDS  NC_008527  2354375  2354581  207  hypothetical protein  YP_812064  decreased coverage  0.00133091  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2539  CDS  NC_008527  2369418  2370089  672  cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase  YP_812080  decreased coverage  0.000419866  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_2596  CDS  NC_008527  2426084  2426551  468  30S ribosomal protein S7  YP_812126  decreased coverage  0.000119958  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_D03  CDS  NC_008506  2160  3140  981  tagatose 1,6-diphosphate aldolase  YP_796532  decreased coverage  0.000270283  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_D23  CDS  NC_008506  25430  26584  1155  replication initiator protein  YP_796550  decreased coverage  0.000665285  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_D29  CDS  NC_008506  34184  34864  681  transposase  YP_796555  decreased coverage  6.56405e-05  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
-
 
LACR_t0045  tRNA  NC_008527  40828  40900  73  tRNA-Lys    decreased coverage  9.55688e-06  n/a    Lactococcus lactis subsp. cremoris SK11  Bacteria 
 
 
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