36 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Gdia_0075  CDS  NC_011365  89082  90056  +  975  fatty acid hydroxylase  YP_002274490  normal  1  decreased coverage  0.00145627  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0162  CDS  NC_011365  176368  177714  +  1347  pyruvate dehydrogenase subunit beta  YP_002274577  normal  1  decreased coverage  0.00341074  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0163  CDS  NC_011365  177727  179001  +  1275  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase  YP_002274578  normal  0.625512  decreased coverage  0.00113333  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0164  CDS  NC_011365  179014  180423  +  1410  dihydrolipoamide dehydrogenase  YP_002274579  normal  0.850345  decreased coverage  0.00227015  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0169    NC_011365  183050  185235  +  2186      normal  0.645722  decreased coverage  0.00366507  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0306  CDS  NC_011365  340136  342070  +  1935  hypothetical protein  YP_002274718  normal  0.919182  decreased coverage  0.00578351  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0340  CDS  NC_011365  381532  381795  -  264  hypothetical protein  YP_002274751  decreased coverage  0.00558652  normal  0.108627  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0472  CDS  NC_011365  517729  518070  -  342  hypothetical protein  YP_002274883  normal  0.834023  decreased coverage  0.00034417  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0479  CDS  NC_011365  525264  526040  +  777  MazG family protein  YP_002274890  normal  0.338288  decreased coverage  0.000529646  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0480  CDS  NC_011365  526054  526911  -  858  inositol monophosphatase  YP_002274891  normal  0.230677  decreased coverage  0.000552939  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0481  CDS  NC_011365  526940  528250  -  1311  GTP-binding proten HflX  YP_002274892  normal  0.738379  decreased coverage  0.000424503  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0663  CDS  NC_011365  754315  755616  -  1302  glycosyl transferase group 1  YP_002275069  decreased coverage  0.002459  normal  0.0324915  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0679  CDS  NC_011365  768926  769549  +  624  Lysine exporter protein (LYSE/YGGA)  YP_002275084  normal  1  decreased coverage  0.0000948495  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0680  CDS  NC_011365  769560  770411  -  852  phenazine biosynthesis protein PhzF family  YP_002275085  normal  1  decreased coverage  0.000121985  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0861  CDS  NC_011365  978489  980114  -  1626  chaperonin GroEL  YP_002275266  decreased coverage  0.00285794  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0989  CDS  NC_011365  1109439  1110881  +  1443  hypothetical protein  YP_002275387  decreased coverage  0.00407781  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_0990  CDS  NC_011365  1111324  1113399  -  2076  hypothetical protein  YP_002275388  decreased coverage  0.00334394  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_1064  CDS  NC_011365  1193646  1194278  +  633  Glutathione S-transferase domain  YP_002275462  decreased coverage  0.00553771  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_1785  CDS  NC_011365  1981844  1983289  +  1446  hypothetical protein  YP_002276163  decreased coverage  0.00883697  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_1885  CDS  NC_011365  2102433  2102921  +  489  hypothetical protein  YP_002276260  normal  0.116311  decreased coverage  0.00989828  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_2087  CDS  NC_011365  2317907  2318566  +  660  TonB family protein  YP_002276461  decreased coverage  0.000490312  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_2612  CDS  NC_011365  2875884  2876903  +  1020  transcriptional regulator, LacI family  YP_002276969  decreased coverage  0.00297504  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_2613  CDS  NC_011365  2876941  2878671  +  1731  Levanase  YP_002276970  decreased coverage  0.00261468  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_2891  CDS  NC_011365  3168048  3169727  +  1680  putative ABC transporter ATP-binding protein  YP_002277237  normal  0.315278  decreased coverage  0.00408651  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3023  CDS  NC_011365  3310607  3312157  -  1551  phosphoglyceromutase  YP_002277368  normal  0.634479  decreased coverage  0.00447978  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3030  CDS  NC_011365  3315583  3316041  -  459  transcription elongation factor GreA  YP_002277375  normal  0.953757  decreased coverage  0.00490744  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3031  CDS  NC_011365  3316189  3319443  -  3255  carbamoyl phosphate synthase large subunit  YP_002277376  normal  0.144026  decreased coverage  0.0049366  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3061  CDS  NC_011365  3351062  3351937  -  876  CDP-diacylglycerol--serine O-phosphatidyltransferase  YP_002277406  decreased coverage  0.000000281668  normal  0.246338  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3078  CDS  NC_011365  3367106  3369265  +  2160  CheA signal transduction histidine kinase  YP_002277423  normal  1  decreased coverage  0.00446051  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3171  CDS  NC_011365  3473120  3474283  -  1164  cell cycle protein  YP_002277516  decreased coverage  0.0069748  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3172  CDS  NC_011365  3474283  3475680  -  1398  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_002277517  decreased coverage  0.00926215  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3356  CDS  NC_011365  3675082  3676139  +  1058  transposase  YP_002277697  decreased coverage  0.00274961  normal  0.454158  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3357  CDS  NC_011365  3676589  3677635  -  1047  Succinylglutamate desuccinylase/aspartoacylase  YP_002277698  decreased coverage  0.00503474  normal  0.566037  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_3358  CDS  NC_011365  3677823  3678995  -  1173  DEAD/DEAH box helicase domain protein  YP_002277699  decreased coverage  0.00456117  normal  0.742173  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_R0049  tRNA  NC_011365  3167887  3167960  +  74  tRNA-Met    normal  0.175239  decreased coverage  0.00156348  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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Gdia_R0067  rRNA  NC_011365  3751408  3754146  +  2739  23S ribosomal RNA    decreased coverage  0.0050619  normal  1  Gluconacetobacter diazotrophicus PAl 5  Bacteria 
 
 
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